Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12183
- Subject:
- NM_028385.1
- Aligned Length:
- 4332
- Identities:
- 2520
- Gaps:
- 1569
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAGCATTGCAATCCCTCTGGGAGTCACCACACCAGATACTTCCTACTCAGATATGGCTGCTGGATCAGACCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGAATCTGTGGAGGCTAGTCCAGCAGTTAATGAGAAGAGCGTGTATTCCACTCATAATTATGGGACCACTCAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGCATGGGTGTCGAGGACTGCCTTATGCTACGATCATCCCTCGTTCTGACCTGAATGGCCTGCCGTCGCCCGTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGGAACGCTGTGGAGACAGCCCGAACTCTGAAGGAGAGACTGTTCCTACCTGGTGTCCTTGTGGTCTTTCTCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGATGGCTTCCTTCTCAACTGTGACAAGTGCAGGGGAATGAGCAGGGGGAAGGTTATTAGACTTCATCGGCGGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGCAGGACAACATATCAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGATGAGGAGCTTTCTCCTTCCACTGTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TTGTACACAGCAACACAGCACACACCTACAAGCATCACCTTAACTGTTAGAAGAACCAAACCCAAGAAGCGGAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAAGAGTCCAGAAAAGGGTCGTGCAGCACCAAAGACGAAGAAGATCAAGAATTCTCCCTCGGAAGCACAGAATT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TAGATGAAAATACCACTGAGGGCTGGGAAAATCGGATAAGACTATGGACTGATCAATATGAAGAAGCTTTCACT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AATCAGTACAGTGCAGATGTACAGAATGCCCTTGAGCAACATCTCCATTCTAACAAGGAATTTGTGGGCAAACC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TGCAATTTTAGACACTATTAATAAAACTGAACTGGCCTGTAATAATACAGTAATCGGTTCCCAAATGCAGTTAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGCTGGGAAGAGTCACTCGTGTTCAAAAGCACCGGAAAATCCTGAGGGCTGCAAGAGATTTGGCTTTGGACACT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTTATAATAGAATATCGTGGGAAAGTCATGTTACGACAACAATTTGAGGTCAATGGGCATTTCTTTAAAAAACC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATATCCCTTTGTGCTCTTCTACTCAAAATTCAATGGTGTAGAGATGTGTGTCGATGCTCGTACTTTCGGTAATG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATGCTCGGTTCATCAGAAGATCATGTACACCAAATGCAGAGGTGAGACACATGATTGCAGATGGGATGATTCAC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTGTGTATCTATGCCGTATCTGCTATCACCAAGGATGCAGAAGTCACCATTGCATTTGATTATGAATATAGTAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTGTAATTACAAAGTGGACTGTGCTTGTCACAAGGGAAACCGGAATTGCCCTATACAGAAAAGAAATCCCAATG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTGCAGAATTGCCACTCCCACCTCCTCCTAGCTTTCCCACCATTGGAGCAGAGACCAGACGTAGAAAAGCACGG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CGGAAAGAGCTGGAGCTGGAGCAGCAAAATGAGGTTCCAGAAGAGAATCCTGACCCGCAACCACAAGAAGTTCC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGAAAAAGTAACTGTATCCAATGAGCATGAGGAAGTTGACAATCCAGAAGAAAAACCAGAAGAAGAAGAAAAAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AAGAGGCTACAGATGACCAGGAGAACTCTGCTCATAGCAGAAGGACTCGAGAAGACCGAAAGGTTGAAGCCATC 1554
Query 1 ATGCATGCTTTTGAAAACTTAGAGAAAAGAAAGAAGCGGCGGGATCAGCCCTTGGAACAGAGCAACTCTGATGT 74
|||||||||||||||...||||||||.||||||||.||||||||||||||..|.||||||||||.|||.||..|
Sbjct 1555 ATGCATGCTTTTGAATCTTTAGAGAAGAGAAAGAAACGGCGGGATCAGCCTGTAGAACAGAGCAGCTCGGACAT 1628
Query 75 AGAGATTACTACAACCACCTCAGAGACTCCT----GTTGGTGAAGAGACAAAAACTGAAGCCCCTGAATCTGAA 144
||||||||||||.|.||..||||||| | |||||.||||||||||||||||.|||||||||.||||||
Sbjct 1629 AGAGATTACTACTAGCAGTTCAGAGA----TAGTAGTTGGAGAAGAGACAAAAACTGCAGCCCCTGAGTCTGAA 1698
Query 145 GTTAGCAACTCTGTTTCAAATGTTACCATCCCAAGCACCCCACAGAGTGTTGGTGTGAATACCCGGAGGTCTTC 218
|||||||.|.||||||||||||||.|.||||||||||||||||||||...||||||||||||.||||||||.||
Sbjct 1699 GTTAGCAGCCCTGTTTCAAATGTTGCTATCCCAAGCACCCCACAGAGCACTGGTGTGAATACTCGGAGGTCCTC 1772
Query 219 CCAAGCAGGGGATATTGCTGCAGAAAAACTAGTCCCCAAGCCACCTCCAGCAAAGCCTTCTAGGCCCCGGCCGA 292
|||.||.||||||.|.|||||||||||.|.|.||||.||.|||||||||||.|||||||||||.|||||.||||
Sbjct 1773 CCATGCTGGGGATGTAGCTGCAGAAAAGCCAATCCCTAAACCACCTCCAGCTAAGCCTTCTAGACCCCGACCGA 1846
Query 293 AGAGTCGAATTTCTCGGTACAGGACCAGTTCAGCCCAAAGACTAAAGCGTCAGAAGCAGGCCAATGCACAGCAG 366
|.|||.||||||||||||||.|||||||||||||||||||||||||.||.|||||||||||||.||||||.|||
Sbjct 1847 AAAGTAGAATTTCTCGGTACCGGACCAGTTCAGCCCAAAGACTAAAACGCCAGAAGCAGGCCATTGCACAACAG 1920
Query 367 GCAGAATTGTCACAAGCTGCCTTGGAAGAGGGAGGAAGTAACAGTTTAGTAACTCCTACTGAAGCTGGAAGTCT 440
||||||.||||.|||||||||||||||||.|||||||||||||..|.||||||||||.||||||||||||.|..
Sbjct 1921 GCAGAACTGTCGCAAGCTGCCTTGGAAGAAGGAGGAAGTAACAACTCAGTAACTCCTCCTGAAGCTGGAAATAC 1994
Query 441 AGACAGTTCAGGAGAAAACAGGCCATTAACAGGGTCTGACCCAACTGTGGTGTCAATTACTGGATCCCATGTCA 514
|||||||||||||||.|||||.|...|||||||||||||||||||||||.|.|||.||||||||||||||||||
Sbjct 1995 AGACAGTTCAGGAGAGAACAGACAGCTAACAGGGTCTGACCCAACTGTGATATCAGTTACTGGATCCCATGTCA 2068
Query 515 ACCGTGCTGCATCTAAATACCCCAAAACCAAAAAGTATCTAGTTACAGAATGGTTGAATGACAAAGCAGAGAAG 588
|||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||||||
Sbjct 2069 ACCGTGCTGCATCTAAATACCCCAAAACCAAAAAGTATCTAGTTACAGAATGGTTAAATGACAAGGCAGAGAAG 2142
Query 589 CAAGAGTGCCCTGTTGAGTGCCCTTTACGTATCACAACGGATCCAACTGTACTGGCAACGACCCTAAACATGTT 662
|||||.||||||||||||||.|||||.||||||||.||.||.||||||||..|||||||.|||||.||||||.|
Sbjct 2143 CAAGAATGCCCTGTTGAGTGTCCTTTGCGTATCACCACTGACCCAACTGTGTTGGCAACAACCCTGAACATGCT 2216
Query 663 ACCAGGTCTTATCCATTCCCCGTTAATTTGCACCACCCCCAAACACTACATTCGCTTTGGCTCACCCTTTATCC 736
||||||||||||.||||||||.||||||||.|||||||||||||||||||||||||||||||||||||||||.|
Sbjct 2217 ACCAGGTCTTATTCATTCCCCATTAATTTGTACCACCCCCAAACACTACATTCGCTTTGGCTCACCCTTTATGC 2290
Query 737 CTGAGAGACGTCGAAGGCCCCTTCTGCCTGATGGCACATTCAGCTCCTGTAAGAAGCGCTGGATAAAACAAGCC 810
|||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 2291 CTGAGAGGCGTCGAAGGCCCCTTCTGCCTGATGGCACATTCAGCTCCTGTAAGAAGCGCTGGATAAAGCAAGCC 2364
Query 811 TTAGAAGAAGGGATGACTCAAACATCATCTGTACCCCAAGAGACTAGAACTCAGCACCTATACCAAAGCAATGA 884
||.|||||||||||||||||.||.||||||||.|||||||||||||||||.|||||||||||||||||.|||||
Sbjct 2365 TTGGAAGAAGGGATGACTCAGACTTCATCTGTGCCCCAAGAGACTAGAACACAGCACCTATACCAAAGTAATGA 2438
Query 885 GAATAGTAGCTCTTCTAGTATCTGCAAAGACAATGCAGACTTGTTGAGCCCATTAAAGAAATGGAAGTCTCGCT 958
||.|||||..||||||||||||||.|||||||||||||||||..||||||||||||||||||||||||||||||
Sbjct 2439 GACTAGTAATTCTTCTAGTATCTGTAAAGACAATGCAGACTTACTGAGCCCATTAAAGAAATGGAAGTCTCGCT 2512
Query 959 ATCTGATGGAGCAGAATGTCACCAAGTTACTTCGGCCTCTGTCTCCAGTCACACCACCCCCTCCCAATTCAGGC 1032
|||||||||||||||||.||||||||||.||||.|||||||||||||||.|||||||||||.||||..||||||
Sbjct 2513 ATCTGATGGAGCAGAATATCACCAAGTTGCTTCAGCCTCTGTCTCCAGTTACACCACCCCCACCCAGCTCAGGC 2586
Query 1033 TCAAAGAGTCCCCAGCTGGCCACACCTGGCTCA-TCTCACCCAGGAGAAGAGGAGTGTCGAAATGGATACAGCC 1105
||||||||||||||||||.||||||||||| || .|||||||||||||||||||||||||||||||||||||||
Sbjct 2587 TCAAAGAGTCCCCAGCTGACCACACCTGGC-CAGACTCACCCAGGAGAAGAGGAGTGTCGAAATGGATACAGCC 2659
Query 1106 TCATGTTTTCACCAGTCACATCTCTTACTACTGCTAGTCGCTGCAACACTCCTCTACAGTTTGAGCTTTGTCAC 1179
|||||||.||||||.|||||||||||||||||||||||||.|.||||||||||||.||||||||||||||||||
Sbjct 2660 TCATGTTCTCACCAATCACATCTCTTACTACTGCTAGTCGTTCCAACACTCCTCTGCAGTTTGAGCTTTGTCAC 2733
Query 1180 CGAAAAGACCTGGATTTGGCAAAAGTAGGATACCTTGACTCCAACACTAACAGCTGTGCTGATAGACCTTCCCT 1253
|||||||||||.||||||.|||||||.||||.||..|||||||.||||.|||||||.||||||||.||.|||||
Sbjct 2734 CGAAAAGACCTAGATTTGACAAAAGTGGGATTCCCAGACTCCAGCACTCACAGCTGCGCTGATAGGCCCTCCCT 2807
Query 1254 ACTCAACT-CAGGTCATTCTGACCTGGCTCCTCATCCCTCCCTCGGACCCACTTCTGAGACTGGTTTCCCAAGC 1326
.||.|||| || .||||.|||||||||||.||||||||||..|.|..|||||.||.|||.||||.|||||||||
Sbjct 2808 GCTTAACTGCA-ATCATCCTGACCTGGCTTCTCATCCCTCTGTTGTTCCCACCTCCGAGGCTGGCTTCCCAAGC 2880
Query 1327 AGAAGTGGAGATGGACATCAGACCCTCGTGAGAAACTCAGACCAGGCATTTCGGACAGAGTTCAACTTGATGTA 1400
||.|||||||||||.|.|||||||.|..|||||||||||||||||||.|||.|||||||||||||.||||||||
Sbjct 2881 AGGAGTGGAGATGGTCCTCAGACCTTGCTGAGAAACTCAGACCAGGCGTTTAGGACAGAGTTCAATTTGATGTA 2954
Query 1401 TGCCTACTCCCCTTTGAATGCTATGCCTCGAGCAGATGGACTGTATCGAGGATCTCCTCTAGTGGGGGATAGGA 1474
.|||||||||||||||||||||||||||||||||||||||||||||.||||.|||||..|.|||||.||.||||
Sbjct 2955 CGCCTACTCCCCTTTGAATGCTATGCCTCGAGCAGATGGACTGTATAGAGGGTCTCCCTTGGTGGGAGACAGGA 3028
Query 1475 AGCCTTTACATTTGGATGGGGGATATTGTTCCCCTGCAGAAGGATTTTCCAGCAGATATGAACATGGCTTAATG 1548
|||||||||||||.|||||.|||||||||||||||||.|||||.||||||||||||||||||||||||||.|||
Sbjct 3029 AGCCTTTACATTTAGATGGAGGATATTGTTCCCCTGCTGAAGGCTTTTCCAGCAGATATGAACATGGCTTTATG 3102
Query 1549 AAAGACCTCTCTCGTGGATCCTTGTCACCTGGTGGTGAAAGGGCCTGTGAAGGAGTCCCATCTGCCCCCCAGAA 1622
||||||||||||||.||||||.||||||||||||||||||||.||||||||||||||||||||||.||.|||||
Sbjct 3103 AAAGACCTCTCTCGGGGATCCATGTCACCTGGTGGTGAAAGGACCTGTGAAGGAGTCCCATCTGCTCCTCAGAA 3176
Query 1623 CCCACCACAGAGGAAAAAAGTATCCCTGCTGGAGTACCGAAAACGGAAACAAGAAGCTAAGGAAAATTCTGCTG 1696
||||||.||.||||||||.||||||.||||.||||||||.|||.|.|||||||||||||||||.|||| |||
Sbjct 3177 CCCACCGCAAAGGAAAAAGGTATCCTTGCTAGAGTACCGCAAAAGAAAACAAGAAGCTAAGGAGAATT---CTG 3247
Query 1697 GTGGGGGAGGTGACTCTGCACAGAGCAAAAGCAAGTCTGCAGGAGCTGGGCAAGGCAGCAGTAACTCCGTTTCC 1770
||||||||..|||||||.||||||||||||||||||||.||||||||||||||||||||||||||||.|||||.
Sbjct 3248 GTGGGGGAAATGACTCTTCACAGAGCAAAAGCAAGTCTTCAGGAGCTGGGCAAGGCAGCAGTAACTCTGTTTCT 3321
Query 1771 GACACTGGTGCCCATGGTGTGCAGGGATCCTCAGCCCGAACTCCATCTTCCCCTCACAAAAAATTCTCCCCATC 1844
||||||||||||||||||||||||||||||||||||.||||.||.||.|||||||||||||||||.|||||.||
Sbjct 3322 GACACTGGTGCCCATGGTGTGCAGGGATCCTCAGCCGGAACCCCGTCATCCCCTCACAAAAAATTTTCCCCGTC 3395
Query 1845 TCATTCCTCTATGTCCCATTTGGAGGCGGTAAGCCCATCAGATTCCAGAGGCACTTCTTCATCTCACTGCAGAC 1918
||||||||||...||.||||||||||||||||||||.|||||||||||.|||||||||||.|||||||||||||
Sbjct 3396 TCATTCCTCTGCATCGCATTTGGAGGCGGTAAGCCCGTCAGATTCCAGGGGCACTTCTTCCTCTCACTGCAGAC 3469
Query 1919 CTCAAGAGAATATCAGCAGTAGGTGGATGGTTCCCACATCAGTAGAACGACTCCGAGAAGGAGGGAGCATCCCC 1992
|||||||.||.|||||||||||||||||||||||.||||||||.||||||||||||||||||||.||||||||.
Sbjct 3470 CTCAAGAAAACATCAGCAGTAGGTGGATGGTTCCTACATCAGTTGAACGACTCCGAGAAGGAGGTAGCATCCCT 3543
Query 1993 AAGGTCCTCCGAAGCAGCGTGAGGGTGGCCCAAAAGGGAGAGCCCTCTCCCACATGGGAGAGTAACATCACAGA 2066
|||||.||.||||||||.|||||.||.|||||.|||||||||||.|||||.|||||||||||||||||||||||
Sbjct 3544 AAGGTTCTTCGAAGCAGTGTGAGAGTTGCCCAGAAGGGAGAGCCTTCTCCAACATGGGAGAGTAACATCACAGA 3617
Query 2067 GAAAGACTCAGACCCTGCAGATGGAGAAGGCCCAGAGACATTAAGCTCAGCACTCTCTAAAGGAGCAACAGTTT 2140
||||||.||||||||||||||||||||||||||||||.||||.||||||||||||||||||||||||||.||||
Sbjct 3618 GAAAGAGTCAGACCCTGCAGATGGAGAAGGCCCAGAGCCATTGAGCTCAGCACTCTCTAAAGGAGCAACTGTTT 3691
Query 2141 ACAGCCCTTCCAGATACAGCTACCAGCTCCTGCAGTGTGATAGTCCTCGGACAGAATCACAAAGCCTCCTTCAG 2214
||||||||||||||||.|||||||||||||||||||||||.|||||.|||||||||||||||||||||||||||
Sbjct 3692 ACAGCCCTTCCAGATATAGCTACCAGCTCCTGCAGTGTGACAGTCCACGGACAGAATCACAAAGCCTCCTTCAG 3765
Query 2215 CAGAGTTCCTCCCCCTTCAGAGGACATCCTACACAGTCTCCAGGATACAGTTATCGAACTACTGCACTGAGACC 2288
||||||||.||||||||.|||||||||||.||.||.||||||||||||||||||||||||||||||||||||||
Sbjct 3766 CAGAGTTCGTCCCCCTTTAGAGGACATCCCACCCAATCTCCAGGATACAGTTATCGAACTACTGCACTGAGACC 3839
Query 2289 TGGAAACCCCCCCTCTCACGGTTCTTCAGAATCATCCCTCTCTTCCACGTCCTATTCCAGCCCCGCCCACCCTG 2362
|||||||||.|||||||||||||||||||||||.||||||||||||||||||||..|||||||.||||||||||
Sbjct 3840 TGGAAACCCTCCCTCTCACGGTTCTTCAGAATCCTCCCTCTCTTCCACGTCCTACCCCAGCCCTGCCCACCCTG 3913
Query 2363 TGTCCACAGACTCGTTGGCCCCATTTACGGGGACACCAGGGTATTTTAGCAGCCAGCCACATTCTGGAAACAGC 2436
||||.|||||||||||||||||||||||||||||.||||||||||..|||||||||||.|||||||||||||||
Sbjct 3914 TGTCTACAGACTCGTTGGCCCCATTTACGGGGACTCCAGGGTATTACAGCAGCCAGCCGCATTCTGGAAACAGC 3987
Query 2437 ACTGGCAGCAATCTTCCAAGGAGGAGCTGCCCTTCTAGTGCTGCTAGCCCTACCCTGCAGGGACCCTCAGACTC 2510
|||||||||||||||||||||||||||||..||||.|||||||||||||||||||..|||||.|||||||||||
Sbjct 3988 ACTGGCAGCAATCTTCCAAGGAGGAGCTGTTCTTCAAGTGCTGCTAGCCCTACCCCACAGGGCCCCTCAGACTC 4061
Query 2511 GCCAACCTCAGATTCAGTTTCTCAGTCCAGCACAGGAACTCTGAGTTCCACCTCCTTTCCTCAGAACTCTAGGT 2584
.||.||||||||.||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4062 ACCGACCTCAGACTCGGTTTCTCAGTCCAGCACAGGAACTCTGAGTTCCACCTCCTTTCCTCAGAACTCTAGGT 4135
Query 2585 CGTCATTGCCATCAGACTTACGGACTATCAGTCTGCCCAGTGCTGGGCAGTCAGCTGTCTACCAGGCCTCCAGG 2658
|.|||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||||||||||||||||
Sbjct 4136 CTTCATTGCCATCAGACTTACGGACTATCAGTCTGCCCAATGCTGGGCAGTCAGCTGCCTACCAGGCCTCCAGG 4209
Query 2659 GTATCTGCGGTTTCCAATTCACAGCACTACCCACACCGTGGGAGTGGGGGTGTGCACCAGTACCGACTCCAGCC 2732
|||||||||||||||||||||||||||||||||||.|||||.|||||||||||.||||||||||||||||||||
Sbjct 4210 GTATCTGCGGTTTCCAATTCACAGCACTACCCACATCGTGGTAGTGGGGGTGTACACCAGTACCGACTCCAGCC 4283
Query 2733 ACTGCAAGGGTCAGGAGTCAAGACTCAGACGGGACTTTCC 2772
||||||||||||||||||||||||||||||.|||||||||
Sbjct 4284 ACTGCAAGGGTCAGGAGTCAAGACTCAGACAGGACTTTCC 4323
