Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12183
- Subject:
- XM_011241482.2
- Aligned Length:
- 4389
- Identities:
- 2520
- Gaps:
- 1626
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAGCATTGCAATCCCTCTGGGAGTCACCACACCAGATACTTCCTACTCAGATATGGCTGCTGGATCAGACCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGAATCTGTGGAGGCTAGTCCAGCAGTTAATGAGAAGAGCGTGTATTCCACTCATAATTATGGGACCACTCAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGCATGGGTGTCGAGGACTGCCTTATGCTGATCATAATTACGGAGCCCCTCCTCCTCCGACACCTCCTGCTTCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCCCCTGTCCAGACGATCATCCCTCGTTCTGACCTGAATGGCCTGCCGTCGCCCGTAGAGGAACGCTGTGGAGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAGCCCGAACTCTGAAGGAGAGACTGTTCCTACCTGGTGTCCTTGTGGTCTTTCTCAGGATGGCTTCCTTCTCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACTGTGACAAGTGCAGGGGAATGAGCAGGGGGAAGGTTATTAGACTTCATCGGCGGAAGCAGGACAACATATCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGTGGGGATAGCAGTGCAACAGAAAGCTGGGATGAGGAGCTTTCTCCTTCCACTGTGTTGTACACAGCAACACA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCACACACCTACAAGCATCACCTTAACTGTTAGAAGAACCAAACCCAAGAAGCGGAAAAAGAGTCCAGAAAAGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GTCGTGCAGCACCAAAGACGAAGAAGATCAAGAATTCTCCCTCGGAAGCACAGAATTTAGATGAAAATACCACT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GAGGGCTGGGAAAATCGGATAAGACTATGGACTGATCAATATGAAGAAGCTTTCACTAATCAGTACAGTGCAGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TGTACAGAATGCCCTTGAGCAACATCTCCATTCTAACAAGGAATTTGTGGGCAAACCTGCAATTTTAGACACTA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTAATAAAACTGAACTGGCCTGTAATAATACAGTAATCGGTTCCCAAATGCAGTTACAGCTGGGAAGAGTCACT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CGTGTTCAAAAGCACCGGAAAATCCTGAGGGCTGCAAGAGATTTGGCTTTGGACACTCTTATAATAGAATATCG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGGGAAAGTCATGTTACGACAACAATTTGAGGTCAATGGGCATTTCTTTAAAAAACCATATCCCTTTGTGCTCT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TCTACTCAAAATTCAATGGTGTAGAGATGTGTGTCGATGCTCGTACTTTCGGTAATGATGCTCGGTTCATCAGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGATCATGTACACCAAATGCAGAGGTGAGACACATGATTGCAGATGGGATGATTCACTTGTGTATCTATGCCGT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ATCTGCTATCACCAAGGATGCAGAAGTCACCATTGCATTTGATTATGAATATAGTAACTGTAATTACAAAGTGG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ACTGTGCTTGTCACAAGGGAAACCGGAATTGCCCTATACAGAAAAGAAATCCCAATGCTGCAGAATTGCCACTC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CCACCTCCTCCTAGCTTTCCCACCATTGGAGCAGAGACCAGACGTAGAAAAGCACGGCGGAAAGAGCTGGAGCT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GGAGCAGCAAAATGAGGTTCCAGAAGAGAATCCTGACCCGCAACCACAAGAAGTTCCAGAAAAAGTAACTGTAT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CCAATGAGCATGAGGAAGTTGACAATCCAGAAGAAAAACCAGAAGAAGAAGAAAAAGAAGAGGCTACAGATGAC 1554
Query 1 ---------------------------------------------------------ATGCATGCTTTTGAAAA 17
|||||||||||||||..
Sbjct 1555 CAGGAGAACTCTGCTCATAGCAGAAGGACTCGAGAAGACCGAAAGGTTGAAGCCATCATGCATGCTTTTGAATC 1628
Query 18 CTTAGAGAAAAGAAAGAAGCGGCGGGATCAGCCCTTGGAACAGAGCAACTCTGATGTAGAGATTACTACAACCA 91
.||||||||.||||||||.||||||||||||||..|.||||||||||.|||.||..|||||||||||||.|.||
Sbjct 1629 TTTAGAGAAGAGAAAGAAACGGCGGGATCAGCCTGTAGAACAGAGCAGCTCGGACATAGAGATTACTACTAGCA 1702
Query 92 CCTCAGAGACTCCT----GTTGGTGAAGAGACAAAAACTGAAGCCCCTGAATCTGAAGTTAGCAACTCTGTTTC 161
..||||||| | |||||.||||||||||||||||.|||||||||.|||||||||||||.|.|||||||
Sbjct 1703 GTTCAGAGA----TAGTAGTTGGAGAAGAGACAAAAACTGCAGCCCCTGAGTCTGAAGTTAGCAGCCCTGTTTC 1772
Query 162 AAATGTTACCATCCCAAGCACCCCACAGAGTGTTGGTGTGAATACCCGGAGGTCTTCCCAAGCAGGGGATATTG 235
|||||||.|.||||||||||||||||||||...||||||||||||.||||||||.|||||.||.||||||.|.|
Sbjct 1773 AAATGTTGCTATCCCAAGCACCCCACAGAGCACTGGTGTGAATACTCGGAGGTCCTCCCATGCTGGGGATGTAG 1846
Query 236 CTGCAGAAAAACTAGTCCCCAAGCCACCTCCAGCAAAGCCTTCTAGGCCCCGGCCGAAGAGTCGAATTTCTCGG 309
||||||||||.|.|.||||.||.|||||||||||.|||||||||||.|||||.|||||.|||.|||||||||||
Sbjct 1847 CTGCAGAAAAGCCAATCCCTAAACCACCTCCAGCTAAGCCTTCTAGACCCCGACCGAAAAGTAGAATTTCTCGG 1920
Query 310 TACAGGACCAGTTCAGCCCAAAGACTAAAGCGTCAGAAGCAGGCCAATGCACAGCAGGCAGAATTGTCACAAGC 383
|||.|||||||||||||||||||||||||.||.|||||||||||||.||||||.|||||||||.||||.|||||
Sbjct 1921 TACCGGACCAGTTCAGCCCAAAGACTAAAACGCCAGAAGCAGGCCATTGCACAACAGGCAGAACTGTCGCAAGC 1994
Query 384 TGCCTTGGAAGAGGGAGGAAGTAACAGTTTAGTAACTCCTACTGAAGCTGGAAGTCTAGACAGTTCAGGAGAAA 457
||||||||||||.|||||||||||||..|.||||||||||.||||||||||||.|..|||||||||||||||.|
Sbjct 1995 TGCCTTGGAAGAAGGAGGAAGTAACAACTCAGTAACTCCTCCTGAAGCTGGAAATACAGACAGTTCAGGAGAGA 2068
Query 458 ACAGGCCATTAACAGGGTCTGACCCAACTGTGGTGTCAATTACTGGATCCCATGTCAACCGTGCTGCATCTAAA 531
||||.|...|||||||||||||||||||||||.|.|||.|||||||||||||||||||||||||||||||||||
Sbjct 2069 ACAGACAGCTAACAGGGTCTGACCCAACTGTGATATCAGTTACTGGATCCCATGTCAACCGTGCTGCATCTAAA 2142
Query 532 TACCCCAAAACCAAAAAGTATCTAGTTACAGAATGGTTGAATGACAAAGCAGAGAAGCAAGAGTGCCCTGTTGA 605
||||||||||||||||||||||||||||||||||||||.||||||||.||||||||||||||.|||||||||||
Sbjct 2143 TACCCCAAAACCAAAAAGTATCTAGTTACAGAATGGTTAAATGACAAGGCAGAGAAGCAAGAATGCCCTGTTGA 2216
Query 606 GTGCCCTTTACGTATCACAACGGATCCAACTGTACTGGCAACGACCCTAAACATGTTACCAGGTCTTATCCATT 679
|||.|||||.||||||||.||.||.||||||||..|||||||.|||||.||||||.|||||||||||||.||||
Sbjct 2217 GTGTCCTTTGCGTATCACCACTGACCCAACTGTGTTGGCAACAACCCTGAACATGCTACCAGGTCTTATTCATT 2290
Query 680 CCCCGTTAATTTGCACCACCCCCAAACACTACATTCGCTTTGGCTCACCCTTTATCCCTGAGAGACGTCGAAGG 753
||||.||||||||.|||||||||||||||||||||||||||||||||||||||||.||||||||.|||||||||
Sbjct 2291 CCCCATTAATTTGTACCACCCCCAAACACTACATTCGCTTTGGCTCACCCTTTATGCCTGAGAGGCGTCGAAGG 2364
Query 754 CCCCTTCTGCCTGATGGCACATTCAGCTCCTGTAAGAAGCGCTGGATAAAACAAGCCTTAGAAGAAGGGATGAC 827
||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.||||||||||||||
Sbjct 2365 CCCCTTCTGCCTGATGGCACATTCAGCTCCTGTAAGAAGCGCTGGATAAAGCAAGCCTTGGAAGAAGGGATGAC 2438
Query 828 TCAAACATCATCTGTACCCCAAGAGACTAGAACTCAGCACCTATACCAAAGCAATGAGAATAGTAGCTCTTCTA 901
|||.||.||||||||.|||||||||||||||||.|||||||||||||||||.|||||||.|||||..|||||||
Sbjct 2439 TCAGACTTCATCTGTGCCCCAAGAGACTAGAACACAGCACCTATACCAAAGTAATGAGACTAGTAATTCTTCTA 2512
Query 902 GTATCTGCAAAGACAATGCAGACTTGTTGAGCCCATTAAAGAAATGGAAGTCTCGCTATCTGATGGAGCAGAAT 975
|||||||.|||||||||||||||||..|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2513 GTATCTGTAAAGACAATGCAGACTTACTGAGCCCATTAAAGAAATGGAAGTCTCGCTATCTGATGGAGCAGAAT 2586
Query 976 GTCACCAAGTTACTTCGGCCTCTGTCTCCAGTCACACCACCCCCTCCCAATTCAGGCTCAAAGAGTCCCCAGCT 1049
.||||||||||.||||.|||||||||||||||.|||||||||||.||||..|||||||||||||||||||||||
Sbjct 2587 ATCACCAAGTTGCTTCAGCCTCTGTCTCCAGTTACACCACCCCCACCCAGCTCAGGCTCAAAGAGTCCCCAGCT 2660
Query 1050 GGCCACACCTGGCTCA-TCTCACCCAGGAGAAGAGGAGTGTCGAAATGGATACAGCCTCATGTTTTCACCAGTC 1122
|.||||||||||| || .||||||||||||||||||||||||||||||||||||||||||||||.||||||.||
Sbjct 2661 GACCACACCTGGC-CAGACTCACCCAGGAGAAGAGGAGTGTCGAAATGGATACAGCCTCATGTTCTCACCAATC 2733
Query 1123 ACATCTCTTACTACTGCTAGTCGCTGCAACACTCCTCTACAGTTTGAGCTTTGTCACCGAAAAGACCTGGATTT 1196
|||||||||||||||||||||||.|.||||||||||||.|||||||||||||||||||||||||||||.|||||
Sbjct 2734 ACATCTCTTACTACTGCTAGTCGTTCCAACACTCCTCTGCAGTTTGAGCTTTGTCACCGAAAAGACCTAGATTT 2807
Query 1197 GGCAAAAGTAGGATACCTTGACTCCAACACTAACAGCTGTGCTGATAGACCTTCCCTACTCAACT-CAGGTCAT 1269
|.|||||||.||||.||..|||||||.||||.|||||||.||||||||.||.|||||.||.|||| || .||||
Sbjct 2808 GACAAAAGTGGGATTCCCAGACTCCAGCACTCACAGCTGCGCTGATAGGCCCTCCCTGCTTAACTGCA-ATCAT 2880
Query 1270 TCTGACCTGGCTCCTCATCCCTCCCTCGGACCCACTTCTGAGACTGGTTTCCCAAGCAGAAGTGGAGATGGACA 1343
.|||||||||||.||||||||||..|.|..|||||.||.|||.||||.|||||||||||.|||||||||||.|.
Sbjct 2881 CCTGACCTGGCTTCTCATCCCTCTGTTGTTCCCACCTCCGAGGCTGGCTTCCCAAGCAGGAGTGGAGATGGTCC 2954
Query 1344 TCAGACCCTCGTGAGAAACTCAGACCAGGCATTTCGGACAGAGTTCAACTTGATGTATGCCTACTCCCCTTTGA 1417
|||||||.|..|||||||||||||||||||.|||.|||||||||||||.||||||||.||||||||||||||||
Sbjct 2955 TCAGACCTTGCTGAGAAACTCAGACCAGGCGTTTAGGACAGAGTTCAATTTGATGTACGCCTACTCCCCTTTGA 3028
Query 1418 ATGCTATGCCTCGAGCAGATGGACTGTATCGAGGATCTCCTCTAGTGGGGGATAGGAAGCCTTTACATTTGGAT 1491
|||||||||||||||||||||||||||||.||||.|||||..|.|||||.||.|||||||||||||||||.|||
Sbjct 3029 ATGCTATGCCTCGAGCAGATGGACTGTATAGAGGGTCTCCCTTGGTGGGAGACAGGAAGCCTTTACATTTAGAT 3102
Query 1492 GGGGGATATTGTTCCCCTGCAGAAGGATTTTCCAGCAGATATGAACATGGCTTAATGAAAGACCTCTCTCGTGG 1565
||.|||||||||||||||||.|||||.||||||||||||||||||||||||||.|||||||||||||||||.||
Sbjct 3103 GGAGGATATTGTTCCCCTGCTGAAGGCTTTTCCAGCAGATATGAACATGGCTTTATGAAAGACCTCTCTCGGGG 3176
Query 1566 ATCCTTGTCACCTGGTGGTGAAAGGGCCTGTGAAGGAGTCCCATCTGCCCCCCAGAACCCACCACAGAGGAAAA 1639
||||.||||||||||||||||||||.||||||||||||||||||||||.||.|||||||||||.||.|||||||
Sbjct 3177 ATCCATGTCACCTGGTGGTGAAAGGACCTGTGAAGGAGTCCCATCTGCTCCTCAGAACCCACCGCAAAGGAAAA 3250
Query 1640 AAGTATCCCTGCTGGAGTACCGAAAACGGAAACAAGAAGCTAAGGAAAATTCTGCTGGTGGGGGAGGTGACTCT 1713
|.||||||.||||.||||||||.|||.|.|||||||||||||||||.|||| |||||||||||..|||||||
Sbjct 3251 AGGTATCCTTGCTAGAGTACCGCAAAAGAAAACAAGAAGCTAAGGAGAATT---CTGGTGGGGGAAATGACTCT 3321
Query 1714 GCACAGAGCAAAAGCAAGTCTGCAGGAGCTGGGCAAGGCAGCAGTAACTCCGTTTCCGACACTGGTGCCCATGG 1787
.||||||||||||||||||||.||||||||||||||||||||||||||||.|||||.|||||||||||||||||
Sbjct 3322 TCACAGAGCAAAAGCAAGTCTTCAGGAGCTGGGCAAGGCAGCAGTAACTCTGTTTCTGACACTGGTGCCCATGG 3395
Query 1788 TGTGCAGGGATCCTCAGCCCGAACTCCATCTTCCCCTCACAAAAAATTCTCCCCATCTCATTCCTCTATGTCCC 1861
|||||||||||||||||||.||||.||.||.|||||||||||||||||.|||||.||||||||||||...||.|
Sbjct 3396 TGTGCAGGGATCCTCAGCCGGAACCCCGTCATCCCCTCACAAAAAATTTTCCCCGTCTCATTCCTCTGCATCGC 3469
Query 1862 ATTTGGAGGCGGTAAGCCCATCAGATTCCAGAGGCACTTCTTCATCTCACTGCAGACCTCAAGAGAATATCAGC 1935
|||||||||||||||||||.|||||||||||.|||||||||||.||||||||||||||||||||.||.||||||
Sbjct 3470 ATTTGGAGGCGGTAAGCCCGTCAGATTCCAGGGGCACTTCTTCCTCTCACTGCAGACCTCAAGAAAACATCAGC 3543
Query 1936 AGTAGGTGGATGGTTCCCACATCAGTAGAACGACTCCGAGAAGGAGGGAGCATCCCCAAGGTCCTCCGAAGCAG 2009
|||||||||||||||||.||||||||.||||||||||||||||||||.||||||||.|||||.||.||||||||
Sbjct 3544 AGTAGGTGGATGGTTCCTACATCAGTTGAACGACTCCGAGAAGGAGGTAGCATCCCTAAGGTTCTTCGAAGCAG 3617
Query 2010 CGTGAGGGTGGCCCAAAAGGGAGAGCCCTCTCCCACATGGGAGAGTAACATCACAGAGAAAGACTCAGACCCTG 2083
.|||||.||.|||||.|||||||||||.|||||.|||||||||||||||||||||||||||||.||||||||||
Sbjct 3618 TGTGAGAGTTGCCCAGAAGGGAGAGCCTTCTCCAACATGGGAGAGTAACATCACAGAGAAAGAGTCAGACCCTG 3691
Query 2084 CAGATGGAGAAGGCCCAGAGACATTAAGCTCAGCACTCTCTAAAGGAGCAACAGTTTACAGCCCTTCCAGATAC 2157
||||||||||||||||||||.||||.||||||||||||||||||||||||||.||||||||||||||||||||.
Sbjct 3692 CAGATGGAGAAGGCCCAGAGCCATTGAGCTCAGCACTCTCTAAAGGAGCAACTGTTTACAGCCCTTCCAGATAT 3765
Query 2158 AGCTACCAGCTCCTGCAGTGTGATAGTCCTCGGACAGAATCACAAAGCCTCCTTCAGCAGAGTTCCTCCCCCTT 2231
|||||||||||||||||||||||.|||||.|||||||||||||||||||||||||||||||||||.||||||||
Sbjct 3766 AGCTACCAGCTCCTGCAGTGTGACAGTCCACGGACAGAATCACAAAGCCTCCTTCAGCAGAGTTCGTCCCCCTT 3839
Query 2232 CAGAGGACATCCTACACAGTCTCCAGGATACAGTTATCGAACTACTGCACTGAGACCTGGAAACCCCCCCTCTC 2305
.|||||||||||.||.||.|||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 3840 TAGAGGACATCCCACCCAATCTCCAGGATACAGTTATCGAACTACTGCACTGAGACCTGGAAACCCTCCCTCTC 3913
Query 2306 ACGGTTCTTCAGAATCATCCCTCTCTTCCACGTCCTATTCCAGCCCCGCCCACCCTGTGTCCACAGACTCGTTG 2379
||||||||||||||||.||||||||||||||||||||..|||||||.||||||||||||||.||||||||||||
Sbjct 3914 ACGGTTCTTCAGAATCCTCCCTCTCTTCCACGTCCTACCCCAGCCCTGCCCACCCTGTGTCTACAGACTCGTTG 3987
Query 2380 GCCCCATTTACGGGGACACCAGGGTATTTTAGCAGCCAGCCACATTCTGGAAACAGCACTGGCAGCAATCTTCC 2453
|||||||||||||||||.||||||||||..|||||||||||.||||||||||||||||||||||||||||||||
Sbjct 3988 GCCCCATTTACGGGGACTCCAGGGTATTACAGCAGCCAGCCGCATTCTGGAAACAGCACTGGCAGCAATCTTCC 4061
Query 2454 AAGGAGGAGCTGCCCTTCTAGTGCTGCTAGCCCTACCCTGCAGGGACCCTCAGACTCGCCAACCTCAGATTCAG 2527
||||||||||||..||||.|||||||||||||||||||..|||||.|||||||||||.||.||||||||.||.|
Sbjct 4062 AAGGAGGAGCTGTTCTTCAAGTGCTGCTAGCCCTACCCCACAGGGCCCCTCAGACTCACCGACCTCAGACTCGG 4135
Query 2528 TTTCTCAGTCCAGCACAGGAACTCTGAGTTCCACCTCCTTTCCTCAGAACTCTAGGTCGTCATTGCCATCAGAC 2601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 4136 TTTCTCAGTCCAGCACAGGAACTCTGAGTTCCACCTCCTTTCCTCAGAACTCTAGGTCTTCATTGCCATCAGAC 4209
Query 2602 TTACGGACTATCAGTCTGCCCAGTGCTGGGCAGTCAGCTGTCTACCAGGCCTCCAGGGTATCTGCGGTTTCCAA 2675
||||||||||||||||||||||.|||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 4210 TTACGGACTATCAGTCTGCCCAATGCTGGGCAGTCAGCTGCCTACCAGGCCTCCAGGGTATCTGCGGTTTCCAA 4283
Query 2676 TTCACAGCACTACCCACACCGTGGGAGTGGGGGTGTGCACCAGTACCGACTCCAGCCACTGCAAGGGTCAGGAG 2749
||||||||||||||||||.|||||.|||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 4284 TTCACAGCACTACCCACATCGTGGTAGTGGGGGTGTACACCAGTACCGACTCCAGCCACTGCAAGGGTCAGGAG 4357
Query 2750 TCAAGACTCAGACGGGACTTTCC 2772
|||||||||||||.|||||||||
Sbjct 4358 TCAAGACTCAGACAGGACTTTCC 4380
