Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12183
- Subject:
- XM_011241484.2
- Aligned Length:
- 4275
- Identities:
- 2520
- Gaps:
- 1512
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTCCCAGTTGACCTTGGCATTTTGTTTTATCACTTTCCTGGTTGAAGCCAAAAAACGAAGGGATCATAATTA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGGAGCCCCTCCTCCTCCGACACCTCCTGCTTCTCCCCCTGTCCAGACGATCATCCCTCGTTCTGACCTGAATG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCTGCCGTCGCCCGTAGAGGAACGCTGTGGAGACAGCCCGAACTCTGAAGGAGAGACTGTTCCTACCTGGTGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTTGTGGTCTTTCTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCAGGGGAATGAGCAGGGGGAAGGTTAT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TAGACTTCATCGGCGGAAGCAGGACAACATATCAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGATGAGGAGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTTCTCCTTCCACTGTGTTGTACACAGCAACACAGCACACACCTACAAGCATCACCTTAACTGTTAGAAGAACC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAACCCAAGAAGCGGAAAAAGAGTCCAGAAAAGGGTCGTGCAGCACCAAAGACGAAGAAGATCAAGAATTCTCC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTCGGAAGCACAGAATTTAGATGAAAATACCACTGAGGGCTGGGAAAATCGGATAAGACTATGGACTGATCAAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ATGAAGAAGCTTTCACTAATCAGTACAGTGCAGATGTACAGAATGCCCTTGAGCAACATCTCCATTCTAACAAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GAATTTGTGGGCAAACCTGCAATTTTAGACACTATTAATAAAACTGAACTGGCCTGTAATAATACAGTAATCGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTCCCAAATGCAGTTACAGCTGGGAAGAGTCACTCGTGTTCAAAAGCACCGGAAAATCCTGAGGGCTGCAAGAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATTTGGCTTTGGACACTCTTATAATAGAATATCGTGGGAAAGTCATGTTACGACAACAATTTGAGGTCAATGGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CATTTCTTTAAAAAACCATATCCCTTTGTGCTCTTCTACTCAAAATTCAATGGTGTAGAGATGTGTGTCGATGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCGTACTTTCGGTAATGATGCTCGGTTCATCAGAAGATCATGTACACCAAATGCAGAGGTGAGACACATGATTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CAGATGGGATGATTCACTTGTGTATCTATGCCGTATCTGCTATCACCAAGGATGCAGAAGTCACCATTGCATTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GATTATGAATATAGTAACTGTAATTACAAAGTGGACTGTGCTTGTCACAAGGGAAACCGGAATTGCCCTATACA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GAAAAGAAATCCCAATGCTGCAGAATTGCCACTCCCACCTCCTCCTAGCTTTCCCACCATTGGAGCAGAGACCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GACGTAGAAAAGCACGGCGGAAAGAGCTGGAGCTGGAGCAGCAAAATGAGGTTCCAGAAGAGAATCCTGACCCG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CAACCACAAGAAGTTCCAGAAAAAGTAACTGTATCCAATGAGCATGAGGAAGTTGACAATCCAGAAGAAAAACC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGAAGAAGAAGAAAAAGAAGAGGCTACAGATGACCAGGAGAACTCTGCTCATAGCAGAAGGACTCGAGAAGACC 1480
Query 1 -----------------ATGCATGCTTTTGAAAACTTAGAGAAAAGAAAGAAGCGGCGGGATCAGCCCTTGGAA 57
|||||||||||||||...||||||||.||||||||.||||||||||||||..|.|||
Sbjct 1481 GAAAGGTTGAAGCCATCATGCATGCTTTTGAATCTTTAGAGAAGAGAAAGAAACGGCGGGATCAGCCTGTAGAA 1554
Query 58 CAGAGCAACTCTGATGTAGAGATTACTACAACCACCTCAGAGACTCCT----GTTGGTGAAGAGACAAAAACTG 127
|||||||.|||.||..|||||||||||||.|.||..||||||| | |||||.||||||||||||||||
Sbjct 1555 CAGAGCAGCTCGGACATAGAGATTACTACTAGCAGTTCAGAGA----TAGTAGTTGGAGAAGAGACAAAAACTG 1624
Query 128 AAGCCCCTGAATCTGAAGTTAGCAACTCTGTTTCAAATGTTACCATCCCAAGCACCCCACAGAGTGTTGGTGTG 201
.|||||||||.|||||||||||||.|.||||||||||||||.|.||||||||||||||||||||...|||||||
Sbjct 1625 CAGCCCCTGAGTCTGAAGTTAGCAGCCCTGTTTCAAATGTTGCTATCCCAAGCACCCCACAGAGCACTGGTGTG 1698
Query 202 AATACCCGGAGGTCTTCCCAAGCAGGGGATATTGCTGCAGAAAAACTAGTCCCCAAGCCACCTCCAGCAAAGCC 275
|||||.||||||||.|||||.||.||||||.|.|||||||||||.|.|.||||.||.|||||||||||.|||||
Sbjct 1699 AATACTCGGAGGTCCTCCCATGCTGGGGATGTAGCTGCAGAAAAGCCAATCCCTAAACCACCTCCAGCTAAGCC 1772
Query 276 TTCTAGGCCCCGGCCGAAGAGTCGAATTTCTCGGTACAGGACCAGTTCAGCCCAAAGACTAAAGCGTCAGAAGC 349
||||||.|||||.|||||.|||.||||||||||||||.|||||||||||||||||||||||||.||.|||||||
Sbjct 1773 TTCTAGACCCCGACCGAAAAGTAGAATTTCTCGGTACCGGACCAGTTCAGCCCAAAGACTAAAACGCCAGAAGC 1846
Query 350 AGGCCAATGCACAGCAGGCAGAATTGTCACAAGCTGCCTTGGAAGAGGGAGGAAGTAACAGTTTAGTAACTCCT 423
||||||.||||||.|||||||||.||||.|||||||||||||||||.|||||||||||||..|.||||||||||
Sbjct 1847 AGGCCATTGCACAACAGGCAGAACTGTCGCAAGCTGCCTTGGAAGAAGGAGGAAGTAACAACTCAGTAACTCCT 1920
Query 424 ACTGAAGCTGGAAGTCTAGACAGTTCAGGAGAAAACAGGCCATTAACAGGGTCTGACCCAACTGTGGTGTCAAT 497
.||||||||||||.|..|||||||||||||||.|||||.|...|||||||||||||||||||||||.|.|||.|
Sbjct 1921 CCTGAAGCTGGAAATACAGACAGTTCAGGAGAGAACAGACAGCTAACAGGGTCTGACCCAACTGTGATATCAGT 1994
Query 498 TACTGGATCCCATGTCAACCGTGCTGCATCTAAATACCCCAAAACCAAAAAGTATCTAGTTACAGAATGGTTGA 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 1995 TACTGGATCCCATGTCAACCGTGCTGCATCTAAATACCCCAAAACCAAAAAGTATCTAGTTACAGAATGGTTAA 2068
Query 572 ATGACAAAGCAGAGAAGCAAGAGTGCCCTGTTGAGTGCCCTTTACGTATCACAACGGATCCAACTGTACTGGCA 645
|||||||.||||||||||||||.||||||||||||||.|||||.||||||||.||.||.||||||||..|||||
Sbjct 2069 ATGACAAGGCAGAGAAGCAAGAATGCCCTGTTGAGTGTCCTTTGCGTATCACCACTGACCCAACTGTGTTGGCA 2142
Query 646 ACGACCCTAAACATGTTACCAGGTCTTATCCATTCCCCGTTAATTTGCACCACCCCCAAACACTACATTCGCTT 719
||.|||||.||||||.|||||||||||||.||||||||.||||||||.||||||||||||||||||||||||||
Sbjct 2143 ACAACCCTGAACATGCTACCAGGTCTTATTCATTCCCCATTAATTTGTACCACCCCCAAACACTACATTCGCTT 2216
Query 720 TGGCTCACCCTTTATCCCTGAGAGACGTCGAAGGCCCCTTCTGCCTGATGGCACATTCAGCTCCTGTAAGAAGC 793
|||||||||||||||.||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 TGGCTCACCCTTTATGCCTGAGAGGCGTCGAAGGCCCCTTCTGCCTGATGGCACATTCAGCTCCTGTAAGAAGC 2290
Query 794 GCTGGATAAAACAAGCCTTAGAAGAAGGGATGACTCAAACATCATCTGTACCCCAAGAGACTAGAACTCAGCAC 867
||||||||||.||||||||.|||||||||||||||||.||.||||||||.|||||||||||||||||.||||||
Sbjct 2291 GCTGGATAAAGCAAGCCTTGGAAGAAGGGATGACTCAGACTTCATCTGTGCCCCAAGAGACTAGAACACAGCAC 2364
Query 868 CTATACCAAAGCAATGAGAATAGTAGCTCTTCTAGTATCTGCAAAGACAATGCAGACTTGTTGAGCCCATTAAA 941
|||||||||||.|||||||.|||||..||||||||||||||.|||||||||||||||||..|||||||||||||
Sbjct 2365 CTATACCAAAGTAATGAGACTAGTAATTCTTCTAGTATCTGTAAAGACAATGCAGACTTACTGAGCCCATTAAA 2438
Query 942 GAAATGGAAGTCTCGCTATCTGATGGAGCAGAATGTCACCAAGTTACTTCGGCCTCTGTCTCCAGTCACACCAC 1015
||||||||||||||||||||||||||||||||||.||||||||||.||||.|||||||||||||||.|||||||
Sbjct 2439 GAAATGGAAGTCTCGCTATCTGATGGAGCAGAATATCACCAAGTTGCTTCAGCCTCTGTCTCCAGTTACACCAC 2512
Query 1016 CCCCTCCCAATTCAGGCTCAAAGAGTCCCCAGCTGGCCACACCTGGCTCA-TCTCACCCAGGAGAAGAGGAGTG 1088
||||.||||..||||||||||||||||||||||||.||||||||||| || .||||||||||||||||||||||
Sbjct 2513 CCCCACCCAGCTCAGGCTCAAAGAGTCCCCAGCTGACCACACCTGGC-CAGACTCACCCAGGAGAAGAGGAGTG 2585
Query 1089 TCGAAATGGATACAGCCTCATGTTTTCACCAGTCACATCTCTTACTACTGCTAGTCGCTGCAACACTCCTCTAC 1162
||||||||||||||||||||||||.||||||.|||||||||||||||||||||||||.|.||||||||||||.|
Sbjct 2586 TCGAAATGGATACAGCCTCATGTTCTCACCAATCACATCTCTTACTACTGCTAGTCGTTCCAACACTCCTCTGC 2659
Query 1163 AGTTTGAGCTTTGTCACCGAAAAGACCTGGATTTGGCAAAAGTAGGATACCTTGACTCCAACACTAACAGCTGT 1236
||||||||||||||||||||||||||||.||||||.|||||||.||||.||..|||||||.||||.|||||||.
Sbjct 2660 AGTTTGAGCTTTGTCACCGAAAAGACCTAGATTTGACAAAAGTGGGATTCCCAGACTCCAGCACTCACAGCTGC 2733
Query 1237 GCTGATAGACCTTCCCTACTCAACT-CAGGTCATTCTGACCTGGCTCCTCATCCCTCCCTCGGACCCACTTCTG 1309
||||||||.||.|||||.||.|||| || .||||.|||||||||||.||||||||||..|.|..|||||.||.|
Sbjct 2734 GCTGATAGGCCCTCCCTGCTTAACTGCA-ATCATCCTGACCTGGCTTCTCATCCCTCTGTTGTTCCCACCTCCG 2806
Query 1310 AGACTGGTTTCCCAAGCAGAAGTGGAGATGGACATCAGACCCTCGTGAGAAACTCAGACCAGGCATTTCGGACA 1383
||.||||.|||||||||||.|||||||||||.|.|||||||.|..|||||||||||||||||||.|||.|||||
Sbjct 2807 AGGCTGGCTTCCCAAGCAGGAGTGGAGATGGTCCTCAGACCTTGCTGAGAAACTCAGACCAGGCGTTTAGGACA 2880
Query 1384 GAGTTCAACTTGATGTATGCCTACTCCCCTTTGAATGCTATGCCTCGAGCAGATGGACTGTATCGAGGATCTCC 1457
||||||||.||||||||.|||||||||||||||||||||||||||||||||||||||||||||.||||.|||||
Sbjct 2881 GAGTTCAATTTGATGTACGCCTACTCCCCTTTGAATGCTATGCCTCGAGCAGATGGACTGTATAGAGGGTCTCC 2954
Query 1458 TCTAGTGGGGGATAGGAAGCCTTTACATTTGGATGGGGGATATTGTTCCCCTGCAGAAGGATTTTCCAGCAGAT 1531
..|.|||||.||.|||||||||||||||||.|||||.|||||||||||||||||.|||||.|||||||||||||
Sbjct 2955 CTTGGTGGGAGACAGGAAGCCTTTACATTTAGATGGAGGATATTGTTCCCCTGCTGAAGGCTTTTCCAGCAGAT 3028
Query 1532 ATGAACATGGCTTAATGAAAGACCTCTCTCGTGGATCCTTGTCACCTGGTGGTGAAAGGGCCTGTGAAGGAGTC 1605
|||||||||||||.|||||||||||||||||.||||||.||||||||||||||||||||.||||||||||||||
Sbjct 3029 ATGAACATGGCTTTATGAAAGACCTCTCTCGGGGATCCATGTCACCTGGTGGTGAAAGGACCTGTGAAGGAGTC 3102
Query 1606 CCATCTGCCCCCCAGAACCCACCACAGAGGAAAAAAGTATCCCTGCTGGAGTACCGAAAACGGAAACAAGAAGC 1679
||||||||.||.|||||||||||.||.||||||||.||||||.||||.||||||||.|||.|.|||||||||||
Sbjct 3103 CCATCTGCTCCTCAGAACCCACCGCAAAGGAAAAAGGTATCCTTGCTAGAGTACCGCAAAAGAAAACAAGAAGC 3176
Query 1680 TAAGGAAAATTCTGCTGGTGGGGGAGGTGACTCTGCACAGAGCAAAAGCAAGTCTGCAGGAGCTGGGCAAGGCA 1753
||||||.|||| |||||||||||..|||||||.||||||||||||||||||||.||||||||||||||||||
Sbjct 3177 TAAGGAGAATT---CTGGTGGGGGAAATGACTCTTCACAGAGCAAAAGCAAGTCTTCAGGAGCTGGGCAAGGCA 3247
Query 1754 GCAGTAACTCCGTTTCCGACACTGGTGCCCATGGTGTGCAGGGATCCTCAGCCCGAACTCCATCTTCCCCTCAC 1827
||||||||||.|||||.||||||||||||||||||||||||||||||||||||.||||.||.||.|||||||||
Sbjct 3248 GCAGTAACTCTGTTTCTGACACTGGTGCCCATGGTGTGCAGGGATCCTCAGCCGGAACCCCGTCATCCCCTCAC 3321
Query 1828 AAAAAATTCTCCCCATCTCATTCCTCTATGTCCCATTTGGAGGCGGTAAGCCCATCAGATTCCAGAGGCACTTC 1901
||||||||.|||||.||||||||||||...||.||||||||||||||||||||.|||||||||||.||||||||
Sbjct 3322 AAAAAATTTTCCCCGTCTCATTCCTCTGCATCGCATTTGGAGGCGGTAAGCCCGTCAGATTCCAGGGGCACTTC 3395
Query 1902 TTCATCTCACTGCAGACCTCAAGAGAATATCAGCAGTAGGTGGATGGTTCCCACATCAGTAGAACGACTCCGAG 1975
|||.||||||||||||||||||||.||.|||||||||||||||||||||||.||||||||.|||||||||||||
Sbjct 3396 TTCCTCTCACTGCAGACCTCAAGAAAACATCAGCAGTAGGTGGATGGTTCCTACATCAGTTGAACGACTCCGAG 3469
Query 1976 AAGGAGGGAGCATCCCCAAGGTCCTCCGAAGCAGCGTGAGGGTGGCCCAAAAGGGAGAGCCCTCTCCCACATGG 2049
|||||||.||||||||.|||||.||.||||||||.|||||.||.|||||.|||||||||||.|||||.||||||
Sbjct 3470 AAGGAGGTAGCATCCCTAAGGTTCTTCGAAGCAGTGTGAGAGTTGCCCAGAAGGGAGAGCCTTCTCCAACATGG 3543
Query 2050 GAGAGTAACATCACAGAGAAAGACTCAGACCCTGCAGATGGAGAAGGCCCAGAGACATTAAGCTCAGCACTCTC 2123
|||||||||||||||||||||||.||||||||||||||||||||||||||||||.||||.||||||||||||||
Sbjct 3544 GAGAGTAACATCACAGAGAAAGAGTCAGACCCTGCAGATGGAGAAGGCCCAGAGCCATTGAGCTCAGCACTCTC 3617
Query 2124 TAAAGGAGCAACAGTTTACAGCCCTTCCAGATACAGCTACCAGCTCCTGCAGTGTGATAGTCCTCGGACAGAAT 2197
||||||||||||.||||||||||||||||||||.|||||||||||||||||||||||.|||||.||||||||||
Sbjct 3618 TAAAGGAGCAACTGTTTACAGCCCTTCCAGATATAGCTACCAGCTCCTGCAGTGTGACAGTCCACGGACAGAAT 3691
Query 2198 CACAAAGCCTCCTTCAGCAGAGTTCCTCCCCCTTCAGAGGACATCCTACACAGTCTCCAGGATACAGTTATCGA 2271
|||||||||||||||||||||||||.||||||||.|||||||||||.||.||.|||||||||||||||||||||
Sbjct 3692 CACAAAGCCTCCTTCAGCAGAGTTCGTCCCCCTTTAGAGGACATCCCACCCAATCTCCAGGATACAGTTATCGA 3765
Query 2272 ACTACTGCACTGAGACCTGGAAACCCCCCCTCTCACGGTTCTTCAGAATCATCCCTCTCTTCCACGTCCTATTC 2345
||||||||||||||||||||||||||.|||||||||||||||||||||||.||||||||||||||||||||..|
Sbjct 3766 ACTACTGCACTGAGACCTGGAAACCCTCCCTCTCACGGTTCTTCAGAATCCTCCCTCTCTTCCACGTCCTACCC 3839
Query 2346 CAGCCCCGCCCACCCTGTGTCCACAGACTCGTTGGCCCCATTTACGGGGACACCAGGGTATTTTAGCAGCCAGC 2419
||||||.||||||||||||||.|||||||||||||||||||||||||||||.||||||||||..||||||||||
Sbjct 3840 CAGCCCTGCCCACCCTGTGTCTACAGACTCGTTGGCCCCATTTACGGGGACTCCAGGGTATTACAGCAGCCAGC 3913
Query 2420 CACATTCTGGAAACAGCACTGGCAGCAATCTTCCAAGGAGGAGCTGCCCTTCTAGTGCTGCTAGCCCTACCCTG 2493
|.||||||||||||||||||||||||||||||||||||||||||||..||||.|||||||||||||||||||..
Sbjct 3914 CGCATTCTGGAAACAGCACTGGCAGCAATCTTCCAAGGAGGAGCTGTTCTTCAAGTGCTGCTAGCCCTACCCCA 3987
Query 2494 CAGGGACCCTCAGACTCGCCAACCTCAGATTCAGTTTCTCAGTCCAGCACAGGAACTCTGAGTTCCACCTCCTT 2567
|||||.|||||||||||.||.||||||||.||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 3988 CAGGGCCCCTCAGACTCACCGACCTCAGACTCGGTTTCTCAGTCCAGCACAGGAACTCTGAGTTCCACCTCCTT 4061
Query 2568 TCCTCAGAACTCTAGGTCGTCATTGCCATCAGACTTACGGACTATCAGTCTGCCCAGTGCTGGGCAGTCAGCTG 2641
||||||||||||||||||.|||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 4062 TCCTCAGAACTCTAGGTCTTCATTGCCATCAGACTTACGGACTATCAGTCTGCCCAATGCTGGGCAGTCAGCTG 4135
Query 2642 TCTACCAGGCCTCCAGGGTATCTGCGGTTTCCAATTCACAGCACTACCCACACCGTGGGAGTGGGGGTGTGCAC 2715
.|||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||||||||.|||
Sbjct 4136 CCTACCAGGCCTCCAGGGTATCTGCGGTTTCCAATTCACAGCACTACCCACATCGTGGTAGTGGGGGTGTACAC 4209
Query 2716 CAGTACCGACTCCAGCCACTGCAAGGGTCAGGAGTCAAGACTCAGACGGGACTTTCC 2772
|||||||||||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 4210 CAGTACCGACTCCAGCCACTGCAAGGGTCAGGAGTCAAGACTCAGACAGGACTTTCC 4266
