Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12183
- Subject:
- XM_017321770.1
- Aligned Length:
- 4353
- Identities:
- 2520
- Gaps:
- 1590
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGAAGTATTAAGAGATCCAATTAAGAAGAATAGTTCTGAGTCTAAACCAGCCCAGAGTGGCTTCTCTAGGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAACTCCCCGCTCTGCTGCCCTGAATCTGTGGAGGCTAGTCCAGCAGTTAATGAGAAGAGCGTGTATTCCACTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATAATTATGGGACCACTCAGAGGCATGGGTGTCGAGGACTGCCTTATGCTACGATCATCCCTCGTTCTGACCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AATGGCCTGCCGTCGCCCGTAGAGGAACGCTGTGGAGACAGCCCGAACTCTGAAGGAGAGACTGTTCCTACCTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTGTCCTTGTGGTCTTTCTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCAGGGGAATGAGCAGGGGGAAGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTATTAGACTTCATCGGCGGAAGCAGGACAACATATCAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGATGAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GAGCTTTCTCCTTCCACTGTGTTGTACACAGCAACACAGCACACACCTACAAGCATCACCTTAACTGTTAGAAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AACCAAACCCAAGAAGCGGAAAAAGAGTCCAGAAAAGGGTCGTGCAGCACCAAAGACGAAGAAGATCAAGAATT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTCCCTCGGAAGCACAGAATTTAGATGAAAATACCACTGAGGGCTGGGAAAATCGGATAAGACTATGGACTGAT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAATATGAAGAAGCTTTCACTAATCAGTACAGTGCAGATGTACAGAATGCCCTTGAGCAACATCTCCATTCTAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAAGGAATTTGTGGGCAAACCTGCAATTTTAGACACTATTAATAAAACTGAACTGGCCTGTAATAATACAGTAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TCGGTTCCCAAATGCAGTTACAGCTGGGAAGAGTCACTCGTGTTCAAAAGCACCGGAAAATCCTGAGGGCTGCA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGAGATTTGGCTTTGGACACTCTTATAATAGAATATCGTGGGAAAGTCATGTTACGACAACAATTTGAGGTCAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGGGCATTTCTTTAAAAAACCATATCCCTTTGTGCTCTTCTACTCAAAATTCAATGGTGTAGAGATGTGTGTCG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATGCTCGTACTTTCGGTAATGATGCTCGGTTCATCAGAAGATCATGTACACCAAATGCAGAGGTGAGACACATG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATTGCAGATGGGATGATTCACTTGTGTATCTATGCCGTATCTGCTATCACCAAGGATGCAGAAGTCACCATTGC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ATTTGATTATGAATATAGTAACTGTAATTACAAAGTGGACTGTGCTTGTCACAAGGGAAACCGGAATTGCCCTA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TACAGAAAAGAAATCCCAATGCTGCAGAATTGCCACTCCCACCTCCTCCTAGCTTTCCCACCATTGGAGCAGAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ACCAGACGTAGAAAAGCACGGCGGAAAGAGCTGGAGCTGGAGCAGCAAAATGAGGTTCCAGAAGAGAATCCTGA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CCCGCAACCACAAGAAGTTCCAGAAAAAGTAACTGTATCCAATGAGCATGAGGAAGTTGACAATCCAGAAGAAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AACCAGAAGAAGAAGAAAAAGAAGAGGCTACAGATGACCAGGAGAACTCTGCTCATAGCAGAAGGACTCGAGAA 1554
Query 1 ---------------------ATGCATGCTTTTGAAAACTTAGAGAAAAGAAAGAAGCGGCGGGATCAGCCCTT 53
|||||||||||||||...||||||||.||||||||.||||||||||||||..|
Sbjct 1555 GACCGAAAGGTTGAAGCCATCATGCATGCTTTTGAATCTTTAGAGAAGAGAAAGAAACGGCGGGATCAGCCTGT 1628
Query 54 GGAACAGAGCAACTCTGATGTAGAGATTACTACAACCACCTCAGAGACTCCT----GTTGGTGAAGAGACAAAA 123
.||||||||||.|||.||..|||||||||||||.|.||..||||||| | |||||.||||||||||||
Sbjct 1629 AGAACAGAGCAGCTCGGACATAGAGATTACTACTAGCAGTTCAGAGA----TAGTAGTTGGAGAAGAGACAAAA 1698
Query 124 ACTGAAGCCCCTGAATCTGAAGTTAGCAACTCTGTTTCAAATGTTACCATCCCAAGCACCCCACAGAGTGTTGG 197
||||.|||||||||.|||||||||||||.|.||||||||||||||.|.||||||||||||||||||||...|||
Sbjct 1699 ACTGCAGCCCCTGAGTCTGAAGTTAGCAGCCCTGTTTCAAATGTTGCTATCCCAAGCACCCCACAGAGCACTGG 1772
Query 198 TGTGAATACCCGGAGGTCTTCCCAAGCAGGGGATATTGCTGCAGAAAAACTAGTCCCCAAGCCACCTCCAGCAA 271
|||||||||.||||||||.|||||.||.||||||.|.|||||||||||.|.|.||||.||.|||||||||||.|
Sbjct 1773 TGTGAATACTCGGAGGTCCTCCCATGCTGGGGATGTAGCTGCAGAAAAGCCAATCCCTAAACCACCTCCAGCTA 1846
Query 272 AGCCTTCTAGGCCCCGGCCGAAGAGTCGAATTTCTCGGTACAGGACCAGTTCAGCCCAAAGACTAAAGCGTCAG 345
||||||||||.|||||.|||||.|||.||||||||||||||.|||||||||||||||||||||||||.||.|||
Sbjct 1847 AGCCTTCTAGACCCCGACCGAAAAGTAGAATTTCTCGGTACCGGACCAGTTCAGCCCAAAGACTAAAACGCCAG 1920
Query 346 AAGCAGGCCAATGCACAGCAGGCAGAATTGTCACAAGCTGCCTTGGAAGAGGGAGGAAGTAACAGTTTAGTAAC 419
||||||||||.||||||.|||||||||.||||.|||||||||||||||||.|||||||||||||..|.||||||
Sbjct 1921 AAGCAGGCCATTGCACAACAGGCAGAACTGTCGCAAGCTGCCTTGGAAGAAGGAGGAAGTAACAACTCAGTAAC 1994
Query 420 TCCTACTGAAGCTGGAAGTCTAGACAGTTCAGGAGAAAACAGGCCATTAACAGGGTCTGACCCAACTGTGGTGT 493
||||.||||||||||||.|..|||||||||||||||.|||||.|...|||||||||||||||||||||||.|.|
Sbjct 1995 TCCTCCTGAAGCTGGAAATACAGACAGTTCAGGAGAGAACAGACAGCTAACAGGGTCTGACCCAACTGTGATAT 2068
Query 494 CAATTACTGGATCCCATGTCAACCGTGCTGCATCTAAATACCCCAAAACCAAAAAGTATCTAGTTACAGAATGG 567
||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2069 CAGTTACTGGATCCCATGTCAACCGTGCTGCATCTAAATACCCCAAAACCAAAAAGTATCTAGTTACAGAATGG 2142
Query 568 TTGAATGACAAAGCAGAGAAGCAAGAGTGCCCTGTTGAGTGCCCTTTACGTATCACAACGGATCCAACTGTACT 641
||.||||||||.||||||||||||||.||||||||||||||.|||||.||||||||.||.||.||||||||..|
Sbjct 2143 TTAAATGACAAGGCAGAGAAGCAAGAATGCCCTGTTGAGTGTCCTTTGCGTATCACCACTGACCCAACTGTGTT 2216
Query 642 GGCAACGACCCTAAACATGTTACCAGGTCTTATCCATTCCCCGTTAATTTGCACCACCCCCAAACACTACATTC 715
||||||.|||||.||||||.|||||||||||||.||||||||.||||||||.||||||||||||||||||||||
Sbjct 2217 GGCAACAACCCTGAACATGCTACCAGGTCTTATTCATTCCCCATTAATTTGTACCACCCCCAAACACTACATTC 2290
Query 716 GCTTTGGCTCACCCTTTATCCCTGAGAGACGTCGAAGGCCCCTTCTGCCTGATGGCACATTCAGCTCCTGTAAG 789
|||||||||||||||||||.||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2291 GCTTTGGCTCACCCTTTATGCCTGAGAGGCGTCGAAGGCCCCTTCTGCCTGATGGCACATTCAGCTCCTGTAAG 2364
Query 790 AAGCGCTGGATAAAACAAGCCTTAGAAGAAGGGATGACTCAAACATCATCTGTACCCCAAGAGACTAGAACTCA 863
||||||||||||||.||||||||.|||||||||||||||||.||.||||||||.|||||||||||||||||.||
Sbjct 2365 AAGCGCTGGATAAAGCAAGCCTTGGAAGAAGGGATGACTCAGACTTCATCTGTGCCCCAAGAGACTAGAACACA 2438
Query 864 GCACCTATACCAAAGCAATGAGAATAGTAGCTCTTCTAGTATCTGCAAAGACAATGCAGACTTGTTGAGCCCAT 937
|||||||||||||||.|||||||.|||||..||||||||||||||.|||||||||||||||||..|||||||||
Sbjct 2439 GCACCTATACCAAAGTAATGAGACTAGTAATTCTTCTAGTATCTGTAAAGACAATGCAGACTTACTGAGCCCAT 2512
Query 938 TAAAGAAATGGAAGTCTCGCTATCTGATGGAGCAGAATGTCACCAAGTTACTTCGGCCTCTGTCTCCAGTCACA 1011
||||||||||||||||||||||||||||||||||||||.||||||||||.||||.|||||||||||||||.|||
Sbjct 2513 TAAAGAAATGGAAGTCTCGCTATCTGATGGAGCAGAATATCACCAAGTTGCTTCAGCCTCTGTCTCCAGTTACA 2586
Query 1012 CCACCCCCTCCCAATTCAGGCTCAAAGAGTCCCCAGCTGGCCACACCTGGCTCA-TCTCACCCAGGAGAAGAGG 1084
||||||||.||||..||||||||||||||||||||||||.||||||||||| || .||||||||||||||||||
Sbjct 2587 CCACCCCCACCCAGCTCAGGCTCAAAGAGTCCCCAGCTGACCACACCTGGC-CAGACTCACCCAGGAGAAGAGG 2659
Query 1085 AGTGTCGAAATGGATACAGCCTCATGTTTTCACCAGTCACATCTCTTACTACTGCTAGTCGCTGCAACACTCCT 1158
||||||||||||||||||||||||||||.||||||.|||||||||||||||||||||||||.|.||||||||||
Sbjct 2660 AGTGTCGAAATGGATACAGCCTCATGTTCTCACCAATCACATCTCTTACTACTGCTAGTCGTTCCAACACTCCT 2733
Query 1159 CTACAGTTTGAGCTTTGTCACCGAAAAGACCTGGATTTGGCAAAAGTAGGATACCTTGACTCCAACACTAACAG 1232
||.|||||||||||||||||||||||||||||.||||||.|||||||.||||.||..|||||||.||||.||||
Sbjct 2734 CTGCAGTTTGAGCTTTGTCACCGAAAAGACCTAGATTTGACAAAAGTGGGATTCCCAGACTCCAGCACTCACAG 2807
Query 1233 CTGTGCTGATAGACCTTCCCTACTCAACT-CAGGTCATTCTGACCTGGCTCCTCATCCCTCCCTCGGACCCACT 1305
|||.||||||||.||.|||||.||.|||| || .||||.|||||||||||.||||||||||..|.|..|||||.
Sbjct 2808 CTGCGCTGATAGGCCCTCCCTGCTTAACTGCA-ATCATCCTGACCTGGCTTCTCATCCCTCTGTTGTTCCCACC 2880
Query 1306 TCTGAGACTGGTTTCCCAAGCAGAAGTGGAGATGGACATCAGACCCTCGTGAGAAACTCAGACCAGGCATTTCG 1379
||.|||.||||.|||||||||||.|||||||||||.|.|||||||.|..|||||||||||||||||||.|||.|
Sbjct 2881 TCCGAGGCTGGCTTCCCAAGCAGGAGTGGAGATGGTCCTCAGACCTTGCTGAGAAACTCAGACCAGGCGTTTAG 2954
Query 1380 GACAGAGTTCAACTTGATGTATGCCTACTCCCCTTTGAATGCTATGCCTCGAGCAGATGGACTGTATCGAGGAT 1453
||||||||||||.||||||||.|||||||||||||||||||||||||||||||||||||||||||||.||||.|
Sbjct 2955 GACAGAGTTCAATTTGATGTACGCCTACTCCCCTTTGAATGCTATGCCTCGAGCAGATGGACTGTATAGAGGGT 3028
Query 1454 CTCCTCTAGTGGGGGATAGGAAGCCTTTACATTTGGATGGGGGATATTGTTCCCCTGCAGAAGGATTTTCCAGC 1527
||||..|.|||||.||.|||||||||||||||||.|||||.|||||||||||||||||.|||||.|||||||||
Sbjct 3029 CTCCCTTGGTGGGAGACAGGAAGCCTTTACATTTAGATGGAGGATATTGTTCCCCTGCTGAAGGCTTTTCCAGC 3102
Query 1528 AGATATGAACATGGCTTAATGAAAGACCTCTCTCGTGGATCCTTGTCACCTGGTGGTGAAAGGGCCTGTGAAGG 1601
|||||||||||||||||.|||||||||||||||||.||||||.||||||||||||||||||||.||||||||||
Sbjct 3103 AGATATGAACATGGCTTTATGAAAGACCTCTCTCGGGGATCCATGTCACCTGGTGGTGAAAGGACCTGTGAAGG 3176
Query 1602 AGTCCCATCTGCCCCCCAGAACCCACCACAGAGGAAAAAAGTATCCCTGCTGGAGTACCGAAAACGGAAACAAG 1675
||||||||||||.||.|||||||||||.||.||||||||.||||||.||||.||||||||.|||.|.|||||||
Sbjct 3177 AGTCCCATCTGCTCCTCAGAACCCACCGCAAAGGAAAAAGGTATCCTTGCTAGAGTACCGCAAAAGAAAACAAG 3250
Query 1676 AAGCTAAGGAAAATTCTGCTGGTGGGGGAGGTGACTCTGCACAGAGCAAAAGCAAGTCTGCAGGAGCTGGGCAA 1749
||||||||||.|||| |||||||||||..|||||||.||||||||||||||||||||.||||||||||||||
Sbjct 3251 AAGCTAAGGAGAATT---CTGGTGGGGGAAATGACTCTTCACAGAGCAAAAGCAAGTCTTCAGGAGCTGGGCAA 3321
Query 1750 GGCAGCAGTAACTCCGTTTCCGACACTGGTGCCCATGGTGTGCAGGGATCCTCAGCCCGAACTCCATCTTCCCC 1823
||||||||||||||.|||||.||||||||||||||||||||||||||||||||||||.||||.||.||.|||||
Sbjct 3322 GGCAGCAGTAACTCTGTTTCTGACACTGGTGCCCATGGTGTGCAGGGATCCTCAGCCGGAACCCCGTCATCCCC 3395
Query 1824 TCACAAAAAATTCTCCCCATCTCATTCCTCTATGTCCCATTTGGAGGCGGTAAGCCCATCAGATTCCAGAGGCA 1897
||||||||||||.|||||.||||||||||||...||.||||||||||||||||||||.|||||||||||.||||
Sbjct 3396 TCACAAAAAATTTTCCCCGTCTCATTCCTCTGCATCGCATTTGGAGGCGGTAAGCCCGTCAGATTCCAGGGGCA 3469
Query 1898 CTTCTTCATCTCACTGCAGACCTCAAGAGAATATCAGCAGTAGGTGGATGGTTCCCACATCAGTAGAACGACTC 1971
|||||||.||||||||||||||||||||.||.|||||||||||||||||||||||.||||||||.|||||||||
Sbjct 3470 CTTCTTCCTCTCACTGCAGACCTCAAGAAAACATCAGCAGTAGGTGGATGGTTCCTACATCAGTTGAACGACTC 3543
Query 1972 CGAGAAGGAGGGAGCATCCCCAAGGTCCTCCGAAGCAGCGTGAGGGTGGCCCAAAAGGGAGAGCCCTCTCCCAC 2045
|||||||||||.||||||||.|||||.||.||||||||.|||||.||.|||||.|||||||||||.|||||.||
Sbjct 3544 CGAGAAGGAGGTAGCATCCCTAAGGTTCTTCGAAGCAGTGTGAGAGTTGCCCAGAAGGGAGAGCCTTCTCCAAC 3617
Query 2046 ATGGGAGAGTAACATCACAGAGAAAGACTCAGACCCTGCAGATGGAGAAGGCCCAGAGACATTAAGCTCAGCAC 2119
|||||||||||||||||||||||||||.||||||||||||||||||||||||||||||.||||.||||||||||
Sbjct 3618 ATGGGAGAGTAACATCACAGAGAAAGAGTCAGACCCTGCAGATGGAGAAGGCCCAGAGCCATTGAGCTCAGCAC 3691
Query 2120 TCTCTAAAGGAGCAACAGTTTACAGCCCTTCCAGATACAGCTACCAGCTCCTGCAGTGTGATAGTCCTCGGACA 2193
||||||||||||||||.||||||||||||||||||||.|||||||||||||||||||||||.|||||.||||||
Sbjct 3692 TCTCTAAAGGAGCAACTGTTTACAGCCCTTCCAGATATAGCTACCAGCTCCTGCAGTGTGACAGTCCACGGACA 3765
Query 2194 GAATCACAAAGCCTCCTTCAGCAGAGTTCCTCCCCCTTCAGAGGACATCCTACACAGTCTCCAGGATACAGTTA 2267
|||||||||||||||||||||||||||||.||||||||.|||||||||||.||.||.|||||||||||||||||
Sbjct 3766 GAATCACAAAGCCTCCTTCAGCAGAGTTCGTCCCCCTTTAGAGGACATCCCACCCAATCTCCAGGATACAGTTA 3839
Query 2268 TCGAACTACTGCACTGAGACCTGGAAACCCCCCCTCTCACGGTTCTTCAGAATCATCCCTCTCTTCCACGTCCT 2341
||||||||||||||||||||||||||||||.|||||||||||||||||||||||.|||||||||||||||||||
Sbjct 3840 TCGAACTACTGCACTGAGACCTGGAAACCCTCCCTCTCACGGTTCTTCAGAATCCTCCCTCTCTTCCACGTCCT 3913
Query 2342 ATTCCAGCCCCGCCCACCCTGTGTCCACAGACTCGTTGGCCCCATTTACGGGGACACCAGGGTATTTTAGCAGC 2415
|..|||||||.||||||||||||||.|||||||||||||||||||||||||||||.||||||||||..||||||
Sbjct 3914 ACCCCAGCCCTGCCCACCCTGTGTCTACAGACTCGTTGGCCCCATTTACGGGGACTCCAGGGTATTACAGCAGC 3987
Query 2416 CAGCCACATTCTGGAAACAGCACTGGCAGCAATCTTCCAAGGAGGAGCTGCCCTTCTAGTGCTGCTAGCCCTAC 2489
|||||.||||||||||||||||||||||||||||||||||||||||||||..||||.|||||||||||||||||
Sbjct 3988 CAGCCGCATTCTGGAAACAGCACTGGCAGCAATCTTCCAAGGAGGAGCTGTTCTTCAAGTGCTGCTAGCCCTAC 4061
Query 2490 CCTGCAGGGACCCTCAGACTCGCCAACCTCAGATTCAGTTTCTCAGTCCAGCACAGGAACTCTGAGTTCCACCT 2563
||..|||||.|||||||||||.||.||||||||.||.|||||||||||||||||||||||||||||||||||||
Sbjct 4062 CCCACAGGGCCCCTCAGACTCACCGACCTCAGACTCGGTTTCTCAGTCCAGCACAGGAACTCTGAGTTCCACCT 4135
Query 2564 CCTTTCCTCAGAACTCTAGGTCGTCATTGCCATCAGACTTACGGACTATCAGTCTGCCCAGTGCTGGGCAGTCA 2637
||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 4136 CCTTTCCTCAGAACTCTAGGTCTTCATTGCCATCAGACTTACGGACTATCAGTCTGCCCAATGCTGGGCAGTCA 4209
Query 2638 GCTGTCTACCAGGCCTCCAGGGTATCTGCGGTTTCCAATTCACAGCACTACCCACACCGTGGGAGTGGGGGTGT 2711
||||.|||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||||||||
Sbjct 4210 GCTGCCTACCAGGCCTCCAGGGTATCTGCGGTTTCCAATTCACAGCACTACCCACATCGTGGTAGTGGGGGTGT 4283
Query 2712 GCACCAGTACCGACTCCAGCCACTGCAAGGGTCAGGAGTCAAGACTCAGACGGGACTTTCC 2772
.||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 4284 ACACCAGTACCGACTCCAGCCACTGCAAGGGTCAGGAGTCAAGACTCAGACAGGACTTTCC 4344
