Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12232
- Subject:
- XR_002957471.1
- Aligned Length:
- 5676
- Identities:
- 597
- Gaps:
- 5040
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGCGCGCTCCGCTCGGCAGCCTGTGGGACGCGACCGCGGCGCTAGTCTCGTTCCTTTGTGCTGCGGCGGCGGC 74
Query 1 ---------------------------------------------------------------ATGTCGGCGGC 11
|||||||||||
Sbjct 75 TTCTCGAGTCCTCCCCGACGCGTCCTCTAGGCCAGCGAGCCCCGCGCTCTCCGGTGACGGACCATGTCGGCGGC 148
Query 12 GGGAGCGGGCGCGGGCGTAGAGGCGGGCTTCTCCAGCGAGGAGCTGCTCTCGCTCCGTTTCCCGCTGCACCGCG 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GGGAGCGGGCGCGGGCGTAGAGGCGGGCTTCTCCAGCGAGGAGCTGCTCTCGCTCCGTTTCCCGCTGCACCGCG 222
Query 86 CCTGCCGCGACGGGGACCTGGCCACGCTCTGCTCGCTGCTGCAGCAGACACCCCACGCCCACCTGGCCTCTGAG 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCTGCCGCGACGGGGACCTGGCCACGCTCTGCTCGCTGCTGCAGCAGACACCCCACGCCCACCTGGCCTCTGAG 296
Query 160 GACTCCTTCTATGGCTGGACGCCCGTGCACTGGGCCGCGCATTTCGGCAAGTTGGAGTGCTTAGTGCAGTTGGT 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GACTCCTTCTATGGCTGGACGCCCGTGCACTGGGCCGCGCATTTCGGCAAGTTGGAGTGCTTAGTGCAGTTGGT 370
Query 234 GAGAGCGGGAGCCACACTCAACGTCTCCACCACACGGTACGCGCAGACGCCAGCCCACATTGCAGCCTTTGGGG 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GAGAGCGGGAGCCACACTCAACGTCTCCACCACACGGTACGCGCAGACGCCAGCCCACATTGCAGCCTTTGGGG 444
Query 308 GACATCCTCAGTGCCTGGTCTGGCTGATTCAAGCAGGAGCCAACATTAACAAACCGGATTGTGAGGGTGAAACT 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GACATCCTCAGTGCCTGGTCTGGCTGATTCAAGCAGGAGCCAACATTAACAAACCGGATTGTGAGGGTGAAACT 518
Query 382 CCCATTCACAAGGCAGCTCGCTCTGGGAGCCTAGAATGCATCAGTGCCCTTGTGGCGAATGGGGCTCACGTCGA 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CCCATTCACAAGGCAGCTCGCTCTGGGAGCCTAGAATGCATCAGTGCCCTTGTGGCGAATGGGGCTCACGTCGA 592
Query 456 GTT-----------------TATTTCACAGAGCAG-TGTACAT--TCTT--GTCTTCCAGGGGAACTTCAAC-- 505
||| .||||| |||.| |||.||| |.|| .|.|||.|| ||.|
Sbjct 593 GTTGCATCTGTAAGATAACGCATTTC----AGCTGCTGTGCATCGTATTAAATTTTCTAG--------CACCAC 654
Query 506 --------------ATGGAGTTACTTTTGATC----------------CCTCAGTTTT------AA---TTCAG 540
|||||.||.||||| || |.|.|||||| || |||.|
Sbjct 655 ACGTGAGTATGTTAATGGACTTTCTTTT--TCTTTTCTTATTTTAAATCTTGAGTTTTGGTGCCAAGTTTTCTG 726
Query 541 TGTCTAAAGC-------CTGAG--------------------AAATGCCAGTGGCCTGACAGCAGCAGACATTG 587
|||.|.|.|| ||| | |..|||||.|| .|.|||.| .|.|.|||
Sbjct 727 TGTGTGAGGCTCTGTTTCTG-GCTTATATGTTGGTCATTATTATTTGCCATTG--TTTACATC--TAAAAATT- 794
Query 588 CACAAA---CCCAGGGTT---TCCAAGAGTGTGCCCA--------GTTTCT---CTT----GAACCTCCA---- 636
||| |.||||.|| ||.|| ..||||.||| ||||.| ||| |.||||..|
Sbjct 795 ---AAAACGCACAGGATTAAATCTAA-CTTGTGACCAAACTAAATGTTTGTGTACTTTAAAGGACCTAAATCTC 864
Query 637 --------GAATTGTCATC-------TGA-------ACCAT------------TTCTA---------------- 660
||.||.|||.| ||| ||||| ||.||
Sbjct 865 TGTGTATGGAGTTTTCAGCAAGCACGTGAAGTTGTCACCATCCTTAATCTTGCTTATATGGTAGTTCCATTTTT 938
Query 661 -------------------------------------------------------------------------- 660
Sbjct 939 CCACTGCCCCCAATATTTGAGTGCTGCTTGCTTGGTACTCAGGTATTGACTGGAAGAAGAGGATATACTATTAC 1012
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1013 AAAAAGATTGTCATCTCATTTTTCTTTTGAACGATGGAACAAATAACAGCATAACATTAAGTCTTAATGTGATT 1086
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1087 TTGGAAAAAGACTTGAAAACTTGCTGTCTGCTGATAATTAAGAAGACCTTTTCACTACTAGCATTGTAAATAGA 1160
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1161 ATTCGGGCCTTGGAATAGCTGTACTTTCAGTAATTTGGTACCAATTACTTTTGGCTGATTTGTGTTTATTTTCT 1234
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1235 TGAGAGATAAGTGGAGGATGTTTCCATATCAACCAGCTAGTAAAATAGCTTTTTGCCACTGAGTAGAAATAAAA 1308
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1309 AGATTTAGAATGAAACCAGCATGACTTGCATCTCAGGCAGATTTGTAGGTCCGTTTTAATACTGCATTATACGG 1382
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1383 ATGCCAGTGTTTAATGGCAGAGTCTCAGAACTTTTCTACAGGAGAGGATTTCTTGAGAAGCCATTTATTCTGTG 1456
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1457 GTAACCAGATTTTCAGCTGGGCTACATGTATTTTAACTTAATTATTTTTATCTTAACTGGGATCATCAGATAGC 1530
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1531 TTGAGAAGCATCGATAGCCTTATATAAGCAAATTCAGTGACTCACTCTAGAAAAGTCTCTCTTGCCTAGTTTAG 1604
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1605 GAAGTAGGCACAGTTGGCTATAACAAAGCCTAGAATGTGATGTTAGTAGACTATTCTAATGCCACAAAGAATAC 1678
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1679 TGCTTCACTTTAATTAAAAGAAATTTTAATTAAAATGGAATTGTCTTAGTTTGGATCATAATTGACCATTTATG 1752
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1753 ACCCACCTTTGTTTACCATAGAGCCCTGTCTAGAAACCAGATTTTCATTAGGTCAAATACAGGTGATGAGCATA 1826
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1827 TTTAATATTAGTGTTAAATTCATTTGTGACTTTTGCCCTTAGCAAAATGTAACCTAGATTTACTTTTAGCTATT 1900
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1901 CATTTTGAAATTCGTGGTTTCTTTATATTTGTTCATTTTTTTGCCCATCAGAATAATATTTCAGTTACAAAATC 1974
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1975 TACCAGAATTATGACTCTGAATTCATATTTTCTGATTTTAGGTCCTCTGAATTCTAGTCATCCTCACATCCTAC 2048
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2049 TTTTGCCTCCTCTTTTTTTTTTTTTTTTTTTTTTCTAAAAAGAGACAGAGTCTCCCTTTGTCGTCCAGGCTAAA 2122
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2123 GTACAGTGGCATGATTATAGTTCACTGCAACTTCAAACTCCTGGGCTCCAGTGATCCTCCTGCCTCAGATTCTT 2196
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2197 GAGTAGCCAGGACTATAGGCACATACCACCATGCCCAACTAATTTTTAAAAATGTTTAGTAGAGATGGGGTCTT 2270
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2271 GCTGTGTTACCCAGGCTGGTCTCAAACTCCTGGGCTCAAGCAGTCCTTCCACCTTGGCCTCCCAGAGCACTGGG 2344
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2345 TTTACAGGTGTGAGCCACTGTGCAGCCTCCTTTTATCTAATTGTCCCCACAGCAGACTTGTCTGGTCTTGGCTA 2418
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2419 TTTTCCGGTTGTTAAGGTGTTTCAGGATGGAGGAATCAGTTCCTGAGATAGTTATTAAGTTCTGCCTGCTAGAA 2492
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2493 AGGGACAGTAAGTGGGTTGATATCATTCTAGACTTGTTAAGAAATTGTTCAGAATTTTGATTGTTTTTCATAGC 2566
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2567 AGCTTGATTAAAATACAGATTTTAATAATTTCCTTACTACTTTTATAGGTAGTGCTTTCAAATAAAACCAGTGT 2640
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2641 TTGCTAAATCCAAATGTCTTTCTCCCTTGCTAAATTATAGCAGGAGCATGCTAAATATTTCATCAGACTACTGG 2714
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2715 AATGATGGTTTTACATTTTAATGTTTGAAAACATAATTTTGGTTCAATTGCAGTGTAAAACTATTCTCAGTAAC 2788
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2789 TTTAAACTTGAAAACTTGGCACCAAATTTATTTAGGTAGAAACTCTTTAAAAATAGTTTCTTCCTATTATTAAC 2862
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2863 TGAAGAATATATTTAAGAAAGTCTTCATAATTAAATAAGAGTTTGGATACCAAAGGGTTAAAAATACACATGTA 2936
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2937 TTTCTTTTGCTGAAGATATCTTAGATGTTTGCTAATGTTTTATCTTTACAAATGGACAATTTAGTAATGTTTTT 3010
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3011 TATCTTTTTTTAATGATTCCATGTATTTGCTTATTTCCATCTAGGAATAGTTACTAATGTATTTGAGATACAGC 3084
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3085 ATACCAAATTTTAAAGTAACCAGAATCGTGAGTTGATGGTTTTTAGTCCATACTGTTAAACTTATGTTGAAATA 3158
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3159 TTGACATATTTAAATTGGCTTCATGCTAAAAAATTACCAAAGGTAATTTAAAAGGCAGTGTTTTAGAGCAGTAG 3232
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3233 CTCATGGTCAAGGTGGTCACATGACAATGGCTTAAGCTCAGTGTGCTTCTGCACCTTATGTTGTCTATGTATTT 3306
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3307 TTAATCCAAATGTTGCCTGCAAATATGTGATCCCTTATTATTTAAGTTTCCTGTATTATGAACCATTGCCCGTT 3380
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3381 TTAAATCACACAGAAGATTCTGAATCTGTAAAAACTACACATGTCAATGTTTTACAGCTACGTAATTCGAATTG 3454
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3455 ACTTGATTTTTTCAAGTAATCCTAGAAAGGGGGAGCATTCCATATAGAAACTGCTGAAACTGCCACAGGTGCTT 3528
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3529 CTCCGAAAACCTTACAGTTGTGGCATTGAATGTTCAGTATCGCTTCCTTTCTGCACACGAGGCATACTGTTGAG 3602
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3603 CCTGAGAAATGCCAGTGGCCTGACAGCAGCAGACATTGCACAAACCCAGGGTTTCCAAGAGTGTGCCCAGTTTC 3676
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3677 TCTTGAACCTCCAGAATTGTCATCTGAACCATTTCTATAACAATGGCATCTTAAATGGGGGTCATCAGAATGTA 3750
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3751 TTTCCTAATCATATTAGTGTGGGAACAAATCGAAAGAGATGCTTGGAAGACTCAGAAGACTTTGGAGTAAAGAA 3824
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3825 AGCTAGAACTGAAGCTCAAAGCTTGGATTCTGCCGTGCCACTCACGAATGGCGACACAGAAGACGATGCTGACA 3898
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3899 AAATGCACGTTGATAGGGAGTTTGCTGTTGTAACAGGTGGGAGTGGACAGTTTCCTGTTAGCTGCAACAACAAT 3972
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3973 CCAATGGTTGAAGACACCAAACAGCAGGAGAGTGGTTCTGTTGGACCAAAAGAAATAGAAATATATACTGTGTC 4046
Query 661 -------------------------------------------------------------------------- 660
Sbjct 4047 AGCAATGCAGACCCCCTGTCGTTGCAGGAATCAATATGAAAAACAGTAGCTCCGTATCGAATACATTGACAAAT 4120
Query 661 -------------------------------------------------------------------------- 660
Sbjct 4121 GGATGTGTCATCAATGGACATTTGGACTTCCCCTCCACGACCCCGCTCAGTGGGATGGAAAGCAGGAATGGCCA 4194
Query 661 -------------------------------------------------------------------------- 660
Sbjct 4195 GTGCTTGACAGGAACTAACGGAATTAGCAGTGGATTAGCCCCAGGACAGCCGTTTCCGAGTAGCCAGGGTTCTC 4268
Query 661 -------------------------------------------------------------------------- 660
Sbjct 4269 TCTGCATTAGTGGGACTGAGGAGCCAGAGAAGACCCTGAGAGCTAACCCTGAGTTGTGCGGTTCTCTGCACCTG 4342
Query 661 -------------------------------------------------------------------------- 660
Sbjct 4343 AACGGGAGTCCAAGTAGCTGCATAGCCAGTAGGCCTTCCTGGGTGGAAGACATTGGGGATAACCTGTACTATGG 4416
Query 661 -------------------------------------------------------------------------- 660
Sbjct 4417 ACACTACCACGGGTTTGGGGACACTGCTGAAAGCATCCCAGAACTGAACAGTGTGGTCGAGCATTCCAAGTCCG 4490
Query 661 -------------------------------------------------------------------------- 660
Sbjct 4491 TGAAGGTGCAGGAGCGGTACGACAGTGCCGTGCTGGGCACCATGCACCTGCACCACGGCTCCTAGAGACGCTGA 4564
Query 661 -------------------------------------------------------------------------- 660
Sbjct 4565 CCTGGCTCTCGGAAACGCAGGAGTCCTTCCTGGTAGCCAGCTCAGAATACCCATGTAGCAGCAACTTGAACGAA 4638
Query 661 -------------------------------------------------------------------------- 660
Sbjct 4639 TGTCACAACTTGTACGTTTTTTATATACTTCAACTTTCTGAAAAAGTAAACTTCGACAAGTTCCCAGCAACTGC 4712
Query 661 -------------------------------------------------------------------------- 660
Sbjct 4713 TTGTTTGTGCATGAGTAGGGCTTACTAAGTGCATAGATGTTTCTACAGTGAGGTGTCCTTTTTATAAGGTGCAC 4786
Query 661 -------------------------------------------------------------------------- 660
Sbjct 4787 TTTTGGAGTTTTTCTGATGCCAATCTCAACATTGTCTTTTTAATACTGTCACCAGATATTGCCATTTTTCTTTT 4860
Query 661 -------------------------------------------------------------------------- 660
Sbjct 4861 TGTTAAAAGATTATATGATCAAGATAAATTGGGGTGGTAAATCAGGTGCCTGGTAATTTATCTCTTTGCACATG 4934
Query 661 -------------------------------------------------------------------------- 660
Sbjct 4935 GGCATCATTTTAAAAAGCTTGCTTCCACTCTTTTCTGTAGAATTTGACGGAACACAGCTATTTCCCTATGCAAG 5008
Query 661 -------------------------------------------------------------------------- 660
Sbjct 5009 GTACAGCCTTACAAAGATTTCTGCAGTGATTTGTGTGAAGAAGAGAACGTTTGTCTTTTTCAATGAAGCTTTGC 5082
Query 661 -------------------------------------------------------------------------- 660
Sbjct 5083 AGATCACCATGTGGTTGAAGGTTTTAGTTGTGGACACAGTGGTCCCTCCTTAATGATGAAGATCACTGCCTTGG 5156
Query 661 -------------------------------------------------------------------------- 660
Sbjct 5157 GCTTCATGGAAAACAGGCCCAGCCTGGGGCTGCGTTTGGATTTATTGTTTTTATTCCACACTTCCTACTTGGTC 5230
Query 661 -------------------------------------------------------------------------- 660
Sbjct 5231 TCTGGAAGTTTTACCACATGTAACAGATTCCTTTATATGTAGTGGAAATCACTATTTGTAGAAACTGTCAGGTC 5304
Query 661 -------------------------------------------------------------------------- 660
Sbjct 5305 AAAATATTTAACTGACTGTTGACATGTATTTTCTTTTTTCCTTGTTTTTGTTTTTTGGGGTTTTCTGCTTTAAG 5378
Query 661 -------------------------------------------------------------------------- 660
Sbjct 5379 ATATATACCACTATGTATATCCAGTTAACTGAGAGAATTTTGACTCTCTTAATAAAACTGCATTAAGTTTTTGA 5452
Query 661 -------------------------------------------------------------------------- 660
Sbjct 5453 TTTTGTAGAAATTAGCTTTTGTCTAGGCAACTAGTGGTTATACTCTGCAAATATTGTAATGAATTTTTACTTTT 5526
Query 661 -------------------------------------------------------------------------- 660
Sbjct 5527 TTGATTTTTGTAATAAAAATTGGTGCAGATAAAATGTCAAATGAACAAACCAGTGTTCTAAGAGTGTTACTAAC 5600
Query 661 ---------------------------------------------------- 660
Sbjct 5601 ATTTTGTTCTAAAACTGTCCTTCACAAATTGAATAAAAAACTCTCACACTCA 5652
