Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12258
Subject:
XR_002957350.1
Aligned Length:
2970
Identities:
1401
Gaps:
1565

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTAGATCTCTTAAAAAGATGGACCCTCAGCGGCGCTTCCTCGTAGCGAGCCTAGTGGCGGGTGTTTGCATTGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AACGTGAGCGCGACCCGACCTTAAAGAGTGGGGAGCAAAGGGAGGACAGAGCCCTTTAAAACGAGGCGGGTGGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCCTGCCCCTTTAAGGGCGGGGCGTCCGGACGACTGTATCTGAGCCCCAGACTGCCCCGAGTTTCTGTCGCAGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTGCGAGGAAAGGCCCCTAGGCTGGGTCTGGGTGCTTGGCGGCGGCGGCTTCCTCCCCGCTCGTCCTCCCCGGG  296

Query    1  --------------------------------------ATGGAAGCACCTGACTACGAAGTGCTATCCGTGCGA  36
                                                  ||||||||||||||||||||||||||||||||||||
Sbjct  297  CCCAGAGGCACCTCGGCTTCAGTCATGCTGAGCAGAGTATGGAAGCACCTGACTACGAAGTGCTATCCGTGCGA  370

Query   37  GAACAGCTATTCCACGAGAGGATCCGCGAGTGTATTATATCAACACTTCTGTTTGCAACACTGTACATCCTCTG  110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GAACAGCTATTCCACGAGAGGATCCGCGAGTGTATTATATCAACACTTCTGTTTGCAACACTGTACATCCTCTG  444

Query  111  CCACATCTTCCTGACCCGCTTCAAGAAGCCTGCTGAGTTCACCACAGTGGATGATGAAGATGCCACCGTCAACA  184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CCACATCTTCCTGACCCGCTTCAAGAAGCCTGCTGAGTTCACCACAGTGGATGATGAAGATGCCACCGTCAACA  518

Query  185  AGATTGCGCTCGAGCTGTGCACCTTTACCCTGGCAATTGCCCTGGGTGCTGTCCTGCTCCTGCCCTTCTCCATC  258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AGATTGCGCTCGAGCTGTGCACCTTTACCCTGGCAATTGCCCTGGGTGCTGTCCTGCTCCTGCCCTTCTCCATC  592

Query  259  ATCAGCAATGAGGTGCTGCTCTCCCTGCCTCGGAACTACTACATCCAGTGGCTCAACGGCTCCCTCATCCATGG  332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ATCAGCAATGAGGTGCTGCTCTCCCTGCCTCGGAACTACTACATCCAGTGGCTCAACGGCTCCCTCATCCATGG  666

Query  333  CCTCTGGAACCTTGTTTTTCTCTTCTCCAACCTGTCCCTCATCTTCCTCATGCCCTTTGCATATTTCTTCACTG  406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CCTCTGGAACCTTGTTTTTCTCTTCTCCAACCTGTCCCTCATCTTCCTCATGCCCTTTGCATATTTCTTCACTG  740

Query  407  AGTCTGAGGGCTTTGCTGGCTCCAGAAAGGGTGTCCTGGGCCGGGTCTATGAGACAGTGGTGATGTTGATGCTC  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGTCTGAGGGCTTTGCTGGCTCCAGAAAGGGTGTCCTGGGCCGGGTCTATGAGACAGTGGTGATGTTGATGCTC  814

Query  481  CTCACTCTGCTGGTGCTAGGTATGGTGTGGGTGGCATCAGCCATTGTGGACAAGAACAAGGCCAACAGAGAGTC  554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CTCACTCTGCTGGTGCTAGGTATGGTGTGGGTGGCATCAGCCATTGTGGACAAGAACAAGGCCAACAGAGAGTC  888

Query  555  ACTCTATGACTTTTGGGAGTACTATCTCCCCTACCTCTACTCATGCATCTCCTTCCTTGGGGTTCTGCTGCTCC  628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ACTCTATGACTTTTGGGAGTACTATCTCCCCTACCTCTACTCATGCATCTCCTTCCTTGGGGTTCTGCTGCTCC  962

Query  629  TGTTGTGTACTCCACTGGGTCTCGCCCGCATGTTCTCCGTCACTGGGAAGCTGCTAGTCAAGCCCCGGCTGCTG  702
            ||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TGGTGTGTACTCCACTGGGTCTCGCCCGCATGTTCTCCGTCACTGGGAAGCTGCTAGTCAAGCCCCGGCTGCTG  1036

Query  703  GAAGACCTGGAGGAGCAGCTGTACTGCTCAGCCTTTGAGGAGGCAGCCCTGACCCGCAGGATCTGTAATCCTAC  776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GAAGACCTGGAGGAGCAGCTGTACTGCTCAGCCTTTGAGGAGGCAGCCCTGACCCGCAGGATCTGTAATCCTAC  1110

Query  777  TTCCTGCTGGCTGCCTTTAGACATGGAGCTGCTACACAGACAGGTCCTGGCTCTGCAGACACAGAGGGTCCTGC  850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TTCCTGCTGGCTGCCTTTAGACATGGAGCTGCTACACAGACAGGTCCTGGCTCTGCAGACACAGAGGGTCCTGC  1184

Query  851  TG------------------------------------------------------------------------  852
            ||                                                                        
Sbjct 1185  TGGGTATGTGGCTTCGTAGGGCTTGGGATACCTGGGTTTCCCCAAGGAGAGTAGCCCCTGGTTCCAGGTGCTTG  1258

Query  853  ------------------------GAGAAGAGGCGGAAGGCTTCAGCCTGGCAACGGAACCTGGGCTACCCCCT  902
                                    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CTGACAGCCTCCCATCCCTGCACAGAGAAGAGGCGGAAGGCTTCAGCCTGGCAACGGAACCTGGGCTACCCCCT  1332

Query  903  GGCTATGCTGTGCTTGCTGGTGCTGACGGGCCTGTCTGTGCTCATTGTGGCCATCCACATCCTGGAGCTGCTCA  976
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GGCTATGCTGTGCTTGCTGGTGCTGACGGGCCTGTCTGTGCTCATTGTGGCCATCCACATCCTGGAGCTGCTCA  1406

Query  977  TCGATGAGGCTGCCATGCCCCGAGGCATGCAGGT-------TGTACT--CATCTTTTACCTAATGGTGTCCTCA  1041
            ||||||||||||||||||||||||||||||||||       ||..||  ||.|  |||||||||||||||||||
Sbjct 1407  TCGATGAGGCTGCCATGCCCCGAGGCATGCAGGTACCAGGCTGCCCTCCCACC--TTACCTAATGGTGTCCTCA  1478

Query 1042  GTTGTGGGCTTCTATAGCTCTCCACTCTTCCGGAGCCTGCGGCCCAGATGGCACGACACTGCCATGACGCAGAT  1115
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479  GTTGTGGGCTTCTATAGCTCTCCACTCTTCCGGAGCCTGCGGCCCAGATGGCACGACACTGCCATGACGCAGAT  1552

Query 1116  AATTGGGAACTGTGTCTGTCTCCTGGTCCTAAGCTCAGCACTTCCTGTCTTCTCTCGAACCCTGGGGCTCACTC  1189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553  AATTGGGAACTGTGTCTGTCTCCTGGTCCTAAGCTCAGCACTTCCTGTCTTCTCTCGAACCCTGGGGCTCACTC  1626

Query 1190  GCTTTGACCTGCTGGGTGACTTTGGACGCTTCAACTGGCTGGGCAATTTCTACATTGTGTTCCTCTACAACGCA  1263
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1627  GCTTTGACCTGCTGGGTGACTTTGGACGCTTCAACTGGCTGGGCAATTTCTACATTGTGTTCCTCTACAACGCA  1700

Query 1264  GCCTTTGCAGGCCTCACCACACTCTGTCTGGTGAAGACCTTCACTGCAGCTGTGCGGGCAGAGCTGATCCGGGC  1337
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701  GCCTTTGCAGGCCTCACCACACTCTGTCTGGTGAAGACCTTCACTGCAGCTGTGCGGGCAGAGCTGATCCGGGC  1774

Query 1338  CTTTGGGCTGGACAGACTGCCGCTGCCCGTCTCCGGTTTCCCCCAGGCATCTAGGAAGACCCAGCACCAG----  1407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct 1775  CTTTGGGCTGGACAGACTGCCGCTGCCCGTCTCCGGTTTCCCCCAGGCATCTAGGAAGACCCAGCACCAGTGAC  1848

Query 1408  --------------------------------------------------------------------------  1407
                                                                                      
Sbjct 1849  CTCCAGCTGGGGGTGGGAAGGAAAAAACTGGACACTGCCATCTGCTGCCTAGGCCTGGAGGGAAGCCCAAGGCT  1922

Query 1408  --------------------------------------------------------------------------  1407
                                                                                      
Sbjct 1923  ACTTGGACCTCAGGACCTGGAATCTGAGAGGGTGGGTGGCAGAGGGGAGCAGAGCCATCTGCACTATTGCATAA  1996

Query 1408  --------------------------------------------------------------------------  1407
                                                                                      
Sbjct 1997  TCTGAGCCAGAGTTTGGGACCAGGACCTCCTGCTTTTCCATACTTAACTGTGGCCTCAGCATGGGGTAGGGCTG  2070

Query 1408  --------------------------------------------------------------------------  1407
                                                                                      
Sbjct 2071  GGTGACTGGGTCTAGCCCCTGATCCCAAATCTGTTTACACATCAATCTGCCTCACTGCTGTTCTGGGCCATCCC  2144

Query 1408  --------------------------------------------------------------------------  1407
                                                                                      
Sbjct 2145  CATAGCCATGTTTACATGATTTGATGTGCAATAGGGTGGGGTAGGGGCAGGGAAAGGACTGGGCCAGGGCAGGC  2218

Query 1408  --------------------------------------------------------------------------  1407
                                                                                      
Sbjct 2219  TCGGGAGATAGATTGTCTCCCTTGCCTCTGGCCCAGCAGAGCCTAAGCACTGTGCTATCCTGGAGGGGCTTTGG  2292

Query 1408  --------------------------------------------------------------------------  1407
                                                                                      
Sbjct 2293  ACCACCTGAAAGACCAAGGGGATAGGGAGGAGGAGGCTTCAGCCATCAGCAATAAAGTTGATCCCAGGGTTTGC  2366

Query 1408  --------------------------------------------------------------------------  1407
                                                                                      
Sbjct 2367  TTTGTTTTTTTAAAGCACCTGTCTCTGTGTATATTTGAACAGCCTTGCTCCCACCAGCCCGGCGTCTGCCCAGT  2440

Query 1408  --------------------------------------------------------------------------  1407
                                                                                      
Sbjct 2441  AAGAGAAGCAGAGGGGTCCTGCCCACCATCCTTTTCCTTCCCCTTCATCTATATTATTACCATCCTTTGGGGAC  2514

Query 1408  --------------------------------------------------------------------------  1407
                                                                                      
Sbjct 2515  TTGGATCTGGTGTTAGGCCATGCAGTTGGGCAGTGGGAAACTCCTCCATCCTCAGTCTTGCTTAAAGCTGGCTT  2588

Query 1408  --------------------------------------------------------------------------  1407
                                                                                      
Sbjct 2589  GTCCCCTGACTCCTCCTTATATTCATGGCCTTGTTTCTGTACCTTGAGTATTGGGGGTAGGACATGGGCATAGG  2662

Query 1408  --------------------------------------------------------------------------  1407
                                                                                      
Sbjct 2663  AGTAGGCTAACCTCCCCGATACACTCATACCTTCAGCCCTATCCTCCCTGGCTTAACTATTGGATATAGAGTAA  2736

Query 1408  --------------------------------------------------------------------------  1407
                                                                                      
Sbjct 2737  AATAAGTGGCTGGCTGACAAGGATTTTCATTTCCTACCTGAGAGAAGAATCTAGCTTTTTACTAGAGGCCATCA  2810

Query 1408  --------------------------------------------------------------------------  1407
                                                                                      
Sbjct 2811  GTTTCTTGAAAAGCCCATGTGCTATGTTGGGAGTAAGAGCGCAAAACTTAGGCTTATACAGATTGTGTATTGCA  2884

Query 1408  --------------------------------------------------------------------------  1407
                                                                                      
Sbjct 2885  CAGCTTCCAGGGACACCATTCACCTCATAGTCATTGTGTGGATAGTTACTATGATAGTTTTCTAATAAATGTCA  2958

Query 1408  ----------  1407
                      
Sbjct 2959  GTCATCTTGA  2968

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