Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12258
- Subject:
- XR_245944.3
- Aligned Length:
- 2874
- Identities:
- 1401
- Gaps:
- 1469
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTAGATCTCTTAAAAAGATGGACCCTCAGCGGCGCTTCCTCGTAGCGAGCCTAGTGGCGGGTGTTTGCATTGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AACGTGAGCGCGACCCGACCTTAAAGAGTGGGGAGCAAAGGGAGGACAGAGCCCTTTAAAACGAGGCGGGTGGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCTGCCCCTTTAAGGGCGGGGCGTCCGGACGACTGTATCTGAGCCCCAGACTGCCCCGAGTTTCTGTCGCAGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTGCGAGGAAAGGCCCCTAGGCTGGGTCTGGGTGCTTGGCGGCGGCGGCTTCCTCCCCGCTCGTCCTCCCCGGG 296
Query 1 --------------------------------------ATGGAAGCACCTGACTACGAAGTGCTATCCGTGCGA 36
||||||||||||||||||||||||||||||||||||
Sbjct 297 CCCAGAGGCACCTCGGCTTCAGTCATGCTGAGCAGAGTATGGAAGCACCTGACTACGAAGTGCTATCCGTGCGA 370
Query 37 GAACAGCTATTCCACGAGAGGATCCGCGAGTGTATTATATCAACACTTCTGTTTGCAACACTGTACATCCTCTG 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GAACAGCTATTCCACGAGAGGATCCGCGAGTGTATTATATCAACACTTCTGTTTGCAACACTGTACATCCTCTG 444
Query 111 CCACATCTTCCTGACCCGCTTCAAGAAGCCTGCTGAGTTCACCACAGTGGATGATGAAGATGCCACCGTCAACA 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCACATCTTCCTGACCCGCTTCAAGAAGCCTGCTGAGTTCACCACAGTGGATGATGAAGATGCCACCGTCAACA 518
Query 185 AGATTGCGCTCGAGCTGTGCACCTTTACCCTGGCAATTGCCCTGGGTGCTGTCCTGCTCCTGCCCTTCTCCATC 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AGATTGCGCTCGAGCTGTGCACCTTTACCCTGGCAATTGCCCTGGGTGCTGTCCTGCTCCTGCCCTTCTCCATC 592
Query 259 ATCAGCAATGAGGTGCTGCTCTCCCTGCCTCGGAACTACTACATCCAGTGGCTCAACGGCTCCCTCATCCATGG 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATCAGCAATGAGGTGCTGCTCTCCCTGCCTCGGAACTACTACATCCAGTGGCTCAACGGCTCCCTCATCCATGG 666
Query 333 CCTCTGGAACCTTGTTTTTCTCTTCTCCAACCTGTCCCTCATCTTCCTCATGCCCTTTGCATATTTCTTCACTG 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CCTCTGGAACCTTGTTTTTCTCTTCTCCAACCTGTCCCTCATCTTCCTCATGCCCTTTGCATATTTCTTCACTG 740
Query 407 AGTCTGAGGGCTTTGCTGGCTCCAGAAAGGGTGTCCTGGGCCGGGTCTATGAGACAGTGGTGATGTTGATGCTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGTCTGAGGGCTTTGCTGGCTCCAGAAAGGGTGTCCTGGGCCGGGTCTATGAGACAGTGGTGATGTTGATGCTC 814
Query 481 CTCACTCTGCTGGTGCTAGGTATGGTGTGGGTGGCATCAGCCATTGTGGACAAGAACAAGGCCAACAGAGAGTC 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTCACTCTGCTGGTGCTAGGTATGGTGTGGGTGGCATCAGCCATTGTGGACAAGAACAAGGCCAACAGAGAGTC 888
Query 555 ACTCTATGACTTTTGGGAGTACTATCTCCCCTACCTCTACTCATGCATCTCCTTCCTTGGGGTTCTGCTGCTCC 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ACTCTATGACTTTTGGGAGTACTATCTCCCCTACCTCTACTCATGCATCTCCTTCCTTGGGGTTCTGCTGCTCC 962
Query 629 TGTTGTGTACTCCACTGGGTCTCGCCCGCATGTTCTCCGTCACTGGGAAGCTGCTAGTCAAGCCCCGGCTGCTG 702
||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGGTGTGTACTCCACTGGGTCTCGCCCGCATGTTCTCCGTCACTGGGAAGCTGCTAGTCAAGCCCCGGCTGCTG 1036
Query 703 GAAGACCTGGAGGAGCAGCTGTACTGCTCAGCCTTTGAGGAGGCAGCCCTGACCCGCAGGATCTGTAATCCTAC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GAAGACCTGGAGGAGCAGCTGTACTGCTCAGCCTTTGAGGAGGCAGCCCTGACCCGCAGGATCTGTAATCCTAC 1110
Query 777 TTCCTGCTGGCTGCCTTTAGACATGGAGCTGCTACACAGACAGGTCCTGGCTCTGCAGACACAGAGGGTCCTGC 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TTCCTGCTGGCTGCCTTTAGACATGGAGCTGCTACACAGACAGGTCCTGGCTCTGCAGACACAGAGGGTCCTGC 1184
Query 851 TGGAGAAGAGGCGGAAGGCTTCAGCCTGGCAACGGAACCTGGGCTACCCCCTGGCTATGCTGTGCTTGCTGGTG 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGGAGAAGAGGCGGAAGGCTTCAGCCTGGCAACGGAACCTGGGCTACCCCCTGGCTATGCTGTGCTTGCTGGTG 1258
Query 925 CTGACGGGCCTGTCTGTGCTCATTGTGGCCATCCACATCCTGGAGCTGCTCATCGATGAGGCTGCCATGCCCCG 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CTGACGGGCCTGTCTGTGCTCATTGTGGCCATCCACATCCTGGAGCTGCTCATCGATGAGGCTGCCATGCCCCG 1332
Query 999 AGGCATGCAGGT-------TGTACT--CATCTTTTACCTAATGGTGTCCTCAGTTGTGGGCTTCTATAGCTCTC 1063
|||||||||||| ||..|| ||.| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AGGCATGCAGGTACCAGGCTGCCCTCCCACC--TTACCTAATGGTGTCCTCAGTTGTGGGCTTCTATAGCTCTC 1404
Query 1064 CACTCTTCCGGAGCCTGCGGCCCAGATGGCACGACACTGCCATGACGCAGATAATTGGGAACTGTGTCTGTCTC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 CACTCTTCCGGAGCCTGCGGCCCAGATGGCACGACACTGCCATGACGCAGATAATTGGGAACTGTGTCTGTCTC 1478
Query 1138 CTGGTCCTAAGCTCAGCACTTCCTGTCTTCTCTCGAACCCTGGGGCTCACTCGCTTTGACCTGCTGGGTGACTT 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 CTGGTCCTAAGCTCAGCACTTCCTGTCTTCTCTCGAACCCTGGGGCTCACTCGCTTTGACCTGCTGGGTGACTT 1552
Query 1212 TGGACGCTTCAACTGGCTGGGCAATTTCTACATTGTGTTCCTCTACAACGCAGCCTTTGCAGGCCTCACCACAC 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 TGGACGCTTCAACTGGCTGGGCAATTTCTACATTGTGTTCCTCTACAACGCAGCCTTTGCAGGCCTCACCACAC 1626
Query 1286 TCTGTCTGGTGAAGACCTTCACTGCAGCTGTGCGGGCAGAGCTGATCCGGGCCTTTGGGCTGGACAGACTGCCG 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1627 TCTGTCTGGTGAAGACCTTCACTGCAGCTGTGCGGGCAGAGCTGATCCGGGCCTTTGGGCTGGACAGACTGCCG 1700
Query 1360 CTGCCCGTCTCCGGTTTCCCCCAGGCATCTAGGAAGACCCAGCACCAG-------------------------- 1407
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 CTGCCCGTCTCCGGTTTCCCCCAGGCATCTAGGAAGACCCAGCACCAGTGACCTCCAGCTGGGGGTGGGAAGGA 1774
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 1775 AAAAACTGGACACTGCCATCTGCTGCCTAGGCCTGGAGGGAAGCCCAAGGCTACTTGGACCTCAGGACCTGGAA 1848
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 1849 TCTGAGAGGGTGGGTGGCAGAGGGGAGCAGAGCCATCTGCACTATTGCATAATCTGAGCCAGAGTTTGGGACCA 1922
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 1923 GGACCTCCTGCTTTTCCATACTTAACTGTGGCCTCAGCATGGGGTAGGGCTGGGTGACTGGGTCTAGCCCCTGA 1996
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 1997 TCCCAAATCTGTTTACACATCAATCTGCCTCACTGCTGTTCTGGGCCATCCCCATAGCCATGTTTACATGATTT 2070
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2071 GATGTGCAATAGGGTGGGGTAGGGGCAGGGAAAGGACTGGGCCAGGGCAGGCTCGGGAGATAGATTGTCTCCCT 2144
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2145 TGCCTCTGGCCCAGCAGAGCCTAAGCACTGTGCTATCCTGGAGGGGCTTTGGACCACCTGAAAGACCAAGGGGA 2218
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2219 TAGGGAGGAGGAGGCTTCAGCCATCAGCAATAAAGTTGATCCCAGGGTTTGCTTTGTTTTTTTAAAGCACCTGT 2292
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2293 CTCTGTGTATATTTGAACAGCCTTGCTCCCACCAGCCCGGCGTCTGCCCAGTAAGAGAAGCAGAGGGGTCCTGC 2366
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2367 CCACCATCCTTTTCCTTCCCCTTCATCTATATTATTACCATCCTTTGGGGACTTGGATCTGGTGTTAGGCCATG 2440
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2441 CAGTTGGGCAGTGGGAAACTCCTCCATCCTCAGTCTTGCTTAAAGCTGGCTTGTCCCCTGACTCCTCCTTATAT 2514
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2515 TCATGGCCTTGTTTCTGTACCTTGAGTATTGGGGGTAGGACATGGGCATAGGAGTAGGCTAACCTCCCCGATAC 2588
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2589 ACTCATACCTTCAGCCCTATCCTCCCTGGCTTAACTATTGGATATAGAGTAAAATAAGTGGCTGGCTGACAAGG 2662
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2663 ATTTTCATTTCCTACCTGAGAGAAGAATCTAGCTTTTTACTAGAGGCCATCAGTTTCTTGAAAAGCCCATGTGC 2736
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2737 TATGTTGGGAGTAAGAGCGCAAAACTTAGGCTTATACAGATTGTGTATTGCACAGCTTCCAGGGACACCATTCA 2810
Query 1408 -------------------------------------------------------------- 1407
Sbjct 2811 CCTCATAGTCATTGTGTGGATAGTTACTATGATAGTTTTCTAATAAATGTCAGTCATCTTGA 2872
