Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12272
- Subject:
- XM_017314909.1
- Aligned Length:
- 5188
- Identities:
- 652
- Gaps:
- 4505
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAATGGAGGCAAAGAGTGTGACGGAGGAGACAAGGAAGGAGGTCTTGCAGCTATCCAGGTTCCTGTGGGTTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCAGCGGCGTGTGGACCATAATGGCGTGCTGTACATCAGTCCCAGTGGGTCTTTGTTATCTTGCTTGGACCAGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTAAGACATACCTGCTCACTGACGGAACATGCAAGTGTGGCTTGGAATGTCCTCTTATTCTTCCCAAGGTGTTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AATTTTGATCCTGGAGCTGCTGTGAAGCAGAGAACTGCAGAAGATGTTAAGGCAGATGATGATGTCACAAAGCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATGCATACATAAAAGAAAGATCATTGCAGTGGCCACACTCCATCAAAGCATGGAGGCCCCGCATCCTTCTCTGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGCTCACCAGTCCTGGAGGAGGAACAAATGCAACTCCAGTAGTACCTTCACGGGCGGCAACTCCAAGATCAGTA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGAAACAAGTCTCATGAAGGAATTACAAATTCTGTAATGCCAGAATGTAAGAATCCTTTCAAGTTAATGACTGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATCATCAAATGCCATGGGAAGGCTATACATGCAAGACCTGCCTGGAAGCCAGCAGCAGGAGCTCCACCCTGTCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ACCCCCGCCAGAGATTGGGCAGTAGTGAGCATGGACAGAAATCTCCATTTCGTGGCAGCCATGGAGGCCTGCCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGCCCAGCATCATCAGGGTCTCAGATCTATGGAGATGGCTCAATCTCTCCAAGGACTGACCCGCTCGGAAGCCC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TGATGTCTTCACAAGAAATAACCCTGGTTTTCATGGAGCTCCCAATTCCAGCCCTATTCACCTAAATAGGACTC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTCTTTCTCCACCTTCAGTAATGCTACATGGTTCTCCCGTACAGTCATCCTGTGCAATGGCTGGAAGAACTAAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ATACCTCTTTCCCCAACCTTGACTACAAAGAGTCCAGTAATGAAAAAACCAATGTGTAATTTTTCAACTAATAT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGAAATACCACGAGCAATGTTCCACCACAAACCACCCCAAGGCCCACCTCCCCCTCCTCCACCTTCTTGTGCTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTCAGAAAAAGCCATTAACATCTGAGAAAGATCCACTTGGCATTCTTGACCCTATTCCTAGTAAACCAGTGAAT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CAGAACCCTATTATCATTAATCCAACCAGTTTCCATTCAAATGTCCACTCTCAGGTACCTGTGATGAATGTAAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CATGCCTCCTGCTGTTGTTCCTTTGCCAAGTAATCTCCCTTTGCCAACTGTAAAACCTGGTCATATGAATCATG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GGAGTCATGTACAAAGAATTCAGCATTCAGCTTCAACCTCCCTGTCCCCTTCTCCAGTGACATCCCCAGTGCAC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ATGATGGGGACTGGAATTGGAAGGATTGAGGCATCGCCCCAAAGATCACGCTCATCTTCCACATCATCAGATCA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TGGAAATTTCATGATGCCACCTGTAGGACCCCAGGCCACTTGTAGTGGCATAAAGGTTCCACCTAGGTCACCAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGTCAACAATAGGTTCCCCAAGGCCATCAATGCCATCAAGCCCTTCTACCAAGTCTGATGGACATCATCAGTAC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AAGGATATCCCTAACCCATTAATTGCTGGAATGAGTAATGTACTCAATACCCCAAGCAGTGCAGCTTTTCCTAC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGCACCTGCCGGAAATGGTTCTGTAAAGAGTCAGCCTGGTTTGCTGGGAATGCCTTTAAATCAGATCTTGAACC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGCACAATGCTGCCTCCTTTCCAGCAAGTAGTTTACTCTCAGCAGCAGCCAAAGCACAGCTAGCAAATCAAAAC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AAACTTGCTGGTAACAACAGTAGCAGCAGTAACAATTCTGGAGCTGTTGCCAGCAGCGGCAACACTGAAGGACA 1850
Query 1 ----------------ATGTTCCCTCCTACTGCCAACATGCTTCTCCCAACAGGTGAAGGGCAAAGTGGTCGAG 58
|||||||||||.||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 1851 CAGCACTTTAAACACCATGTTCCCTCCAACTGCCAACATGCTTCTCCCAACAGGTGAAGGTCAAAGTGGTCGAG 1924
Query 59 CAGCACTAAGAGATAAGCTGATGTCTCAGCAAAAAGACGCATTGCGGAAAAGAAAACAACCACCTACGACAGTG 132
|||||||||||||||||.||||||||||||||||||||.||||.|||||||||||.||.|||||.||.||||||
Sbjct 1925 CAGCACTAAGAGATAAGTTGATGTCTCAGCAAAAAGACTCATTACGGAAAAGAAAGCAGCCACCCACCACAGTG 1998
Query 133 TTGAGTTTGCTCAGACAGTCTCAAATGGATAGTTCTGCAGTTCCTAAACCTGGACCTGACTTGCTAAGGAAGCA 206
||||||||||||||||||||.|||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1999 TTGAGTTTGCTCAGACAGTCCCAAATGGATAGTTCTGCAGCTCCTAAACCTGGACCTGACTTGCTAAGGAAGCA 2072
Query 207 GGGTCAGGGTTCATTTCCCATCAGTTCAATGTCTCAGTTACTACAGTCTATGAGTTGTCAAAGCTCTCACTTGA 280
.||.|||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 TGGGCAGGGGTCATTTCCCATCAGTTCAATGTCTCAGTTACTACAGTCTATGAGTTGTCAAAGCTCTCACTTGA 2146
Query 281 GTAGCAATAGTACCCCGGGTTGTGGGGCCTCAAATACTGCTTTGCCTTGCTCTGCTAACCAGCTGCATTTTACA 354
|||||||||||||||||||||||||||..||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 2147 GTAGCAATAGTACCCCGGGTTGTGGGGGATCAAATACTGCTTTGCCTTGCTCTGCTAACCAGCTGCATTTTCCA 2220
Query 355 GATCCCAGTATGAACTCTAGTGTTCTTCAGAA---------------CATACCTTTAAGAGGGGAAGCCGTGCA 413
|||||.|.||||||.||.|.|||||||||||| |||||||||||||||||||||||||||
Sbjct 2221 GATCCTAATATGAATTCCACTGTTCTTCAGAATTCACTGACACAGAGCATACCTTTAAGAGGGGAAGCCGTGCA 2294
Query 414 CTGCCACAATGCAAACACTAACTTTGTTCACAGTAACAGTCCAGTCCCCAACCACCATCTTGCAGGTTTAATAA 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 CTGCCACAATGCAAACACTAACTTTGTTCACAGTAACAGTCCAGTCCCCAACCACCATCTTGCAGGTTTAATAA 2368
Query 488 ATCAGATTCAGGCTAGCGGGAACTGTGGGATGCTCAGTCAGTCGGGCATGGCTTTAGGAAATTCCTTACATCCC 561
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||.|||||||||
Sbjct 2369 ATCAGATTCAGGCTAGCGGGAACTGTGGGATGCTCAGTCAGTCGGGCATGGCTTTAGGAAACTCATTACATCCC 2442
Query 562 AATCCACCTCAGTCAAGAATTTCAACGTCCTCCACTCCAGTGATACCAAACAGCATTGTTAGCAGCTATAATCA 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 AATCCACCTCAGTCAAGAATTTCAACGTCCTCCACTCCAGTGATACCAAACAGCATTGTTAGCAGCTATAATCA 2516
Query 636 AACAAGTTCTGAAGCAGGTATGGTT---------------------TTAT---TAGAAAAAAGTACC------- 678
|||||||||||||||||| ||||| .||| |.|.|..||..|||
Sbjct 2517 AACAAGTTCTGAAGCAGG--TGGTTCAAGCCTGCCGTCCTCCATAGCTATAGCTGGCAGCAACCACCCTGCCAT 2588
Query 679 --CAAAGGTAC--------------------------------------------------------------- 687
||||| ||
Sbjct 2589 CACAAAG--ACAACATCTGTTCTCCAAGATGGTGTCATAGTCACCACCGCAGCTGGAAACCCACTGCAGAGTCA 2660
Query 688 -------------------------------------------------------------------------- 687
Sbjct 2661 GCTGCCCATTGGGAGTGACTTTCCTTTTGTTGGCCAAGAGCATGCCCTTCATTTTCCATCCAACAGCACCGCAA 2734
Query 688 -------------------------------------------------------------------------- 687
Sbjct 2735 ACAACCATCTTCCACACCCCTTGAACCCCAGCCTCCTCAGCTCTCTACCTATCTCTTTGCCAGTGAATCAACAG 2808
Query 688 -------------------------------------------------------------------------- 687
Sbjct 2809 CATCTCCTAAACCAGAATCTATTAAATATCCTCCAGCCTTCAGCAGGAGAAGGCAAGTCTGAGATCAACCTCCA 2882
Query 688 -------------------------------------------------------------------------- 687
Sbjct 2883 CCCTTTAGGTTTTCTCAACCCGAATGTAAACGCTGCTTTAGCTTTCCTCTCCGGTGACGTGGATGGGCAGGTAT 2956
Query 688 -------------------------------------------------------------------------- 687
Sbjct 2957 TACAGCCTGTCCACTTTCAGCTCTTAGCAGCCCTGCTTCAGAACCAAGCCCAAGCAGCTGCCATGCTTCCCCTG 3030
Query 688 -------------------------------------------------------------------------- 687
Sbjct 3031 CCGTCTTTCAATCTGACCATCTCAGATCTTTTGCAACCGCAAAATACCCCTTTACCCTTATTAACACAGATGAC 3104
Query 688 -------------------------------------------------------------------------- 687
Sbjct 3105 AGCCCCACCAGACCGTTTGCCAAGCAATCAGTCAGACAACAGCCGAGCTGATACCCTTTTAGGCAGCCCCCTGG 3178
Query 688 -------------------------------------------------------------------------- 687
Sbjct 3179 GAAACCCTTTAGCAGGCAGTGACACTACTTTTAACCCCCTGCTCCTCCCAGCTGTCACTGGGGCCTCAGGATTA 3252
Query 688 -------------------------------------------------------------------------- 687
Sbjct 3253 ATGGCCTTGAATCCCCAGCTGTTGGGGGGTGTCCTGAACTCGGCATCGGCCAACACCGCTATTCATCCAGAGGT 3326
Query 688 -------------------------------------------------------------------------- 687
Sbjct 3327 TTCCATAGCAACCTCCTCCCAGGCAACCACTACCACAACCACTACATCATCAGCAGTGGCAGCACTGACTGTCT 3400
Query 688 -------------------------------------------------------------------------- 687
Sbjct 3401 CAACACTTGGTGGGACAGCAGTGGTGTCAATGGCAGAAACATTGCTGAATATATCTAATAATGCTGGGAATCCA 3474
Query 688 -------------------------------------------------------------------------- 687
Sbjct 3475 CCTGGTCCAGCTAAACTCAACAGTAACTCTATGGTGCCACAGCTACTTAACCCTCTACTGGGGACAGGTCTGCT 3548
Query 688 -------------------------------------------------------------------------- 687
Sbjct 3549 TGGTGATATATCATCCATAAACAATTCATTGAATAACCATCAACTGACTCATCTACAGTCGCTACTAAACAGCA 3622
Query 688 -------------------------------------------------------------------------- 687
Sbjct 3623 ATCAGATGTTTCCTCCAAATCAGCAGCCGCAGCAACACCTTCTCCAGGGACACCAGAATCTCCAGGCCTTCCAA 3696
Query 688 -------------------------------------------------------------------------- 687
Sbjct 3697 GGACAACCCACAGTCCCTTGCCCAGCTAACAATAACCCCATGGCTTGTCTGTTTCAGAACTTCCAGGTGAGGAT 3770
Query 688 -------------------------------------------------------------------------- 687
Sbjct 3771 GCAAGGAGATGCAGCTCTTCTAAATAAAAGAATAAGCACTCAGCCTGGGCTCACAACACTTCCTGAAAACCCAA 3844
Query 688 -------------------------------------------------------------------------- 687
Sbjct 3845 ACCTTGCACTTCCACATTTCCAAGATACACCCTGTGAGCTGCAGCCAAGGATTGACCTTGGTCAGCCTATGAAG 3918
Query 688 -------------------------------------------------------------------------- 687
Sbjct 3919 GACGGCCTCGTTATGGGTGGCCAAGGAGATGCCTCCGTAGACGCCATTTACAAAGCAGTTGTGGATGCAGCCAG 3992
Query 688 -------------------------------------------------------------------------- 687
Sbjct 3993 CAAAGGAATGCAGGTTGTCATCACCACTGCTGTCAACAGCACGACTCAAATCAGCCCTATCCCAGCCCTGAGCG 4066
Query 688 -------------------------------------------------------------------------- 687
Sbjct 4067 CCATGAGTGCCTTCACTGCCTCCATTGGTGACCCATTAAATCTGTCCAGTGCTGTGAGCGCTGTCATCCACGGG 4140
Query 688 -------------------------------------------------------------------------- 687
Sbjct 4141 CGGAACATGGGAGGAGTGGATCATGATGGCAGGCTGAGGAATGCGAGAGGGGCACGGCTACCCAAGAACATAGA 4214
Query 688 -------------------------------------------------------------------------- 687
Sbjct 4215 CCATGGGAAGAACTCCAGCGAAGGAGACGGGTTTGAGTGTTTCAAGTCAGCGAGCTGCCACACATCCAGAAAAC 4288
Query 688 -------------------------------------------------------------------------- 687
Sbjct 4289 AGTGGGATGGGGAGCAAAGTCCCAGAGGGGAGCGCAACAGGTGGAAGTATGAGGAGTTTTTAGATCATCCAGGC 4362
Query 688 -------------------------------------------------------------------------- 687
Sbjct 4363 CATATCCACAGTAGTCCTTGCCACGAAAGGCCCAACAATGTCTCTACACTGCCATTTCTAGCTGGGGAACAGCA 4436
Query 688 -------------------------------------------------------------------------- 687
Sbjct 4437 CCCGATACTGTTACCACCAAGAAACTGTCAAGGTGATAAGATTCTGGAGGAAAATTTCAGGTATAATAATTACA 4510
Query 688 -------------------------------------------------------------------------- 687
Sbjct 4511 AAAGAACTATGATGAGTTTTAAAGAGAGACTAGAGAGTACTGTGGAGAGATGTACACACATTAACGGAAACAGA 4584
Query 688 -------------------------------------------------------------------------- 687
Sbjct 4585 CCTCGTCAGAGTCGGGGCTTTGGAGAGCTGCTAGGCACTGCAAAACAAGACCTAGTTCTAGAGGGGCAGTCTCC 4658
Query 688 -------------------------------------------------------------------------- 687
Sbjct 4659 GGGTTCTTCAAATAGTTTGGAAAGTTCTCTGGTCAAAGACTACATCCATTACAATGGAGACTTTAATGCCAAAA 4732
Query 688 -------------------------------------------------------------------------- 687
Sbjct 4733 CCATTAATGGGTGTGTGCCTAGTCCCTCAGATGCTAAAAGCATTAGTAGTGAAGACGACCTACGGAATCCAGAC 4806
Query 688 -------------------------------------------------------------------------- 687
Sbjct 4807 TCCCCCTCCTCACATGAGTTGATACACTATAGACCAAGGACGTTCAACGTTGGCGACTTGGTCTGGGGCCAAAT 4880
Query 688 -------------------------------------------------------------------------- 687
Sbjct 4881 CAAAGGACTGACTTCCTGGCCTGGGAAATTCATAAGAGAAGACGACGTTCACAATTCATGCCAACAAAGCCCCG 4954
Query 688 -------------------------------------------------------------------------- 687
Sbjct 4955 AGGAAGGGAAGGTGGAGCCCGAGAAGTTGAAGACTCTCACAGAAGGTTTAGAAGCCTACAGCCGCGTCCGGAAA 5028
Query 688 -------------------------------------------------------------------------- 687
Sbjct 5029 AGGAGCAGAAAAAGTGGGAAACTAAATAACCATTTAGAAGCTGCTATTCACGAGGCCATGAGCGAACTGGACAA 5102
Query 688 -------------------------------------------------------------------------- 687
Sbjct 5103 AATGTCTGGGACTGTTCACCAAATCCCACAGGGTGACAGACAAATGAGGCCCCCCAAACCCAAGAGGAGGAAGA 5176
Query 688 -------- 687
Sbjct 5177 TCTCCAGA 5184
