Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12284
Subject:
XR_001741287.2
Aligned Length:
5058
Identities:
615
Gaps:
4443

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GACATTACGGCGGAAGGCTCTGGAGGAAGCAGAAGTGAAGGACCTCGCAGTCCTGGGACGGTGGGGCACAGAGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GAGAAAGGGAGCCCCGGGCGCGGCGCGGTGAGGATGCGAGCAGAGGAAGGACACGCGGCGCCGGGTACCTGCCG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGAGCGCCGGATCCAATGGGAGGAGGGCCCGCGCCGCACCTCAACCTGGCAGAGGACGTCACGACGCCAAGGCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GTCGCCGGGCCAATGGGAGGCCGTCGCGGGCAGGGACGGGGCCGGGAGGAGTCGGGGCTGGGCCGCGCCGAGGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGCTGGCTGACTCCAGTTTAGCCGCCGCCGGAGAGGACGGGCGCCGAGCCGGGGCTGCGGACTTCGGCCTGCCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTCACCTCACTCCCGCTGCTTGCACCTCCCGGATGGTGCTGACTGCTCCCTAAGCGGCGGCGGCGGCGAGTCGT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GAGGACGCGCCGCGGAGGCTGTTCGGGGTCGAGGCTTCCCGTCGCCGGCACTTCCTCTTGCGGCGCCCGTGCGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGCCGGCCCGGCAGGCGGGATGGCGGCCGCGGCTCCAGGGAACGGCCGCGCATCGGCGCCCCGGCTGCTTCTGC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TCTTTCTGGTTCCGCTGCTGTGGGCCCCGGCTGCGGTCCGGGCCGGCCCAGATGAAGACCTTAGCCACCGGAAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AAAGAACCGCCGGCGCCGGCCCAGCAGCTGCAGCCGCAGCCTGTGGCTGTGCAGGGCCCCGAGCCGGCCCGGGT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CGAGAAAATATTTACACCAGCAGCTCCAGTTCATACCAATAAAGAAGATCCTGCTACCCAAACTAATTTGGGAT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TTATCCATGCATTTGTCGCTGCCATATCAGTTATTATTGTATCTGAATTGGGTGATAAGACATTTTTTATAGCA  888

Query    1  ------ATGGCAATGCGCTATAACCGCCTGACCGTGCTGGCTGGTGCAATGCTTGCCTTGGGACTAATGACATG  68
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GCCATCATGGCAATGCGCTATAACCGCCTGACCGTGCTGGCTGGTGCAATGCTTGCCTTGGGACTAATGACATG  962

Query   69  CTTGTCAGTTTTGTTTGGCTATGCCACCACAGTCATCCCCAGGGTCTATACATACTATGTTTCAACTGTATTAT  142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CTTGTCAGTTTTGTTTGGCTATGCCACCACAGTCATCCCCAGGGTCTATACATACTATGTTTCAACTGTATTAT  1036

Query  143  TTGCCATTTTTGGCATTAGAATGCTTCGGGAAGGCTTAAAGATGAGCCCTGATGAGGGTCAAGAGGAACTGGAA  216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TTGCCATTTTTGGCATTAGAATGCTTCGGGAAGGCTTAAAGATGAGCCCTGATGAGGGTCAAGAGGAACTGGAA  1110

Query  217  GAAGTTCAAGCTGAATTAAAGAAGAAAGATGAAGAATTTCAACGAACCAAACTTTTAAATGGACCGGGAGATGT  290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GAAGTTCAAGCTGAATTAAAGAAGAAAGATGAAGAATTTCAACGAACCAAACTTTTAAATGGACCGGGAGATGT  1184

Query  291  TGAAACGGGTACAAGCATAACAGTACCTCAGAAAAAGTGGTTGCATTTTATTTCACCCATTTTTGTTCAAGCTC  364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TGAAACGGGTACAAGCATAACAGTACCTCAGAAAAAGTGGTTGCATTTTATTTCACCCATTTTTGTTCAAGCTC  1258

Query  365  TTACATTAACATTCTTAGCAGAATGGGGTGATCGCTCTCAACTAACTACAATTGTATTGGCAGCTAGAG-----  433
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct 1259  TTACATTAACATTCTTAGCAGAATGGGGTGATCGCTCTCAACTAACTACAATTGTATTGGCAGCTAGAGAGGTG  1332

Query  434  --------------------------------------------------------------------------  433
                                                                                      
Sbjct 1333  AGTGATATTTGAGAGGAGACTGTTTAAAATGAAACGTAATTATTATTACTTTGTTCCAGAAAACACTGGACACA  1406

Query  434  --------------------------------------------------------------------------  433
                                                                                      
Sbjct 1407  CTGAAGTGGGCCACAGCATTCCTTCATATGCAAGACTGTTTTACATCTGATAATTCAGCTGCTCTCTAAAATTG  1480

Query  434  --------------------------AGGACCCCTATGGTGTAGCCGTGGGTGGAACTGTGGGGCACTGCCTGT  481
                                      ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  GCCTTCTCCCAGTTCCTGCTACCTGCAGGACCCCTATGGTGTAGCCGTGGGTGGAACTGTGGGGCACTGCCTGT  1554

Query  482  GCACGGGATTGGCAGTAATTGGAGGAAGAATGATAGCACAGAAAATCTCTGTCAGAACTGTGACAATCATAGGA  555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GCACGGGATTGGCAGTAATTGGAGGAAGAATGATAGCACAGAAAATCTCTGTCAGAACTGTGACAATCATAGGA  1628

Query  556  GGCATCGTTTTTTTGGCGTTTGCATTTTCTGCACTATTTATAAGCCCTGATTCTGGTTTT--------------  615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct 1629  GGCATCGTTTTTTTGGCGTTTGCATTTTCTGCACTATTTATAAGCCCTGATTCTGGTTTTTAACAAGCTGTTTG  1702

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1703  TTCATCTATATTTAGTTTAAAATAGGTAGTATTATCTTTCTGTACATAGTGTACATTACAACTAAAAGTGATGG  1776

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1777  AAAAATACTGTATTTTGTAGCACTGATTTTGTGAGTTTGACCCATTATTATGTCTGAGATATAATCATTGATTC  1850

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1851  TATTTGTAACAAGGAGTTTTAAAAGAAACCTGACTTCTAAGTGTGGGTTTTTCTTCTCTCCAACATAATTATGT  1924

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1925  TAATATGGTCCTCATTTTTCTTTTGGTGCAGAACCGTTGTGCAGTGGGGTCTACCATGCAATTTTCTTTCAGCA  1998

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1999  CTGACCCCTTTTTAAGGAATACAAATTTTCTCCTTCATCACTTAGGTGTTTTAAGATGTTTACCTTAAAGTTTT  2072

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2073  TCTTGGGGAAAGAATGAATTAATTTCTATTTCTTAAAACATTTCCCTGAGCCAGTAAACAGTAGTTTAATCATT  2146

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2147  GGTCTTTTCAAAACTAGGTGTTTAAAAAAAGAGACATATATGATATTGCTGTTATATCAATAACATGGCACAAC  2220

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2221  AAGAACTGTCTGCCAGGTCATTCTTCCTCTTTTTTTTTTAATTGGGTAGGACACCCAATATAAAAACAGTCAAT  2294

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2295  ATTTGACAATGTGGAATTACCAAATTAAAAGAGAATACTATGAATGTATTCATATTTTTTCTATATTGAATAAA  2368

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2369  CAATGTAACATAGATAACAATATAAATAAAAGTGGTATGACCAGTGCTTGTTTTTCCTTGTGTGTCATATAAAA  2442

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2443  TTATCAGTATTGATAGGCCAATTTCTAAAGCTGATGTAAAAACACTAACATATTAAATATTTGAGATATGCCTA  2516

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2517  AAGTAGCTAAACAGGAGCCAGGCATTGTTCGAAAGCATTGTCACCCTTACAGTTCTGTGAGGTAGTAGGTACTA  2590

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2591  ATATAAGGTTAAAAAAGAAAAAAACTAACTCACCCAAGGTTACATGGTAGAGTCACACCAGGCGGTTTAATTCC  2664

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2665  AGAGCCTAATGTCATTCATTATGCTAAGACTACCTCATTTTTTCATGGCAACTTCAGTCGTCACCCTCGTTTGA  2738

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2739  GTATATTTTGATTTGACTACTACTTCACCCAAGTAGCATAACAGCTGCTTTCTCTCAGCCTTTTATATTCTAGA  2812

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2813  ATCATATGCAGTAACATTCCCATTAATAGCCTCACTAAATTGAAGGACAATTCTACAGAAACATCCATGTTATT  2886

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2887  TGTGTGAGGTATAATAGGAGACCCAGAGCAATTCAGGTTTATGAGCTACTACAAAGGTCCACAATGTAGTCTGC  2960

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2961  AATTTGAAGAGATTGTGAAAGAACCCAGTTAATCATCCAGCACTGTAGGATGCAGCAATTGTCCTACATGGTAA  3034

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3035  CTCTGTGAGGAAGATGATAGCTACTACTGTGGAGATCTTAAGAGGAGTTTTCAGCTTAAATGCCAAGTTAGAAG  3108

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3109  TAGCACATGTTGGTAAAAAAGGTCATATTTGTAGTTTTCTGCTATAGGAAGTATCAAAGGGTAGAAAACAATGT  3182

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3183  CTGTGGATTAAGATAAACTCTGTGGTTAGACAGTCTATATTGCCTTAGATTGTTTGTTTGTTATAAAGAAAGAG  3256

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3257  TGAGGAATTCTCACTAGTATTTTTTTTTTTTTTTTTGAGAGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGT  3330

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3331  GGTGTGATCTTGGCTCACTGCAACCTCCACCGCCCGGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCGAGTAGC  3404

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3405  TGGGATTACAGGCGTGCACTACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGATGGAGTTTCGCCAT  3478

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3479  GCTGGCCAGGCTGGTCTCGAACTCCTGACCTTATGATCCGCCCACCTCAGCCTCCCAAAGCGCTGGGATTACAG  3552

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3553  GCGTGAGCCACCATGCTTGGCCTACTAATACGTTTTGTTTGTTTGGAGACAATCTATCTCACTCTGTCACCTGG  3626

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3627  GCTGGAATGCAGTGGCGCAATCTCGGCTCACTGCAACCTCTGCCTCCTGAGTTCAAGCAGTTCTCCTGCCTCAG  3700

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3701  CCTCCCAAGTTGCAGGGATTATAGGTGCCCGCCACCACGCCTGGCTAATTTTTTTGTATTTTCAGTAGAGACAG  3774

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3775  GGTTTTACCATGTTGGCCAGGCTGGTCTTGAACTCATGACCTTAGGTGATCCACCCACCTCAGCCTCCCAAAGT  3848

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3849  GCTAGGATTACAGGCGTGAGCCACCGCACCCAACCGTTTTTTCTAATAACAACAGAAAAGACAATTCCTCGTAG  3922

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3923  GGAGTAGCTGGCACCATCATCGTGTAACCTCAGTTCAGGTAGCTTGGTCCCATTACTAGCTTCATATGCGAATA  3996

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3997  AGAACAGCATCGCATTCTGAGGCACCACAATCTTGTAGCAGGACATAATTCCTCTGAGAATTTTTGGTAAGTCA  4070

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4071  GACCTAAGCTATAAGGTAAAAATCGCTACTGCAATAGGCTCCATTGTTGAATAAAAGAAAGGGAAATGTCATTG  4144

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4145  ATAGTGATCTTAAAATATTTAATAGTCTTTCTTTAAAATCCAAAATGTGATTCTTACAAGTTATGTGCCACATG  4218

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4219  AAGCAGGTGTTATTTTTTGAGAAATGCAGGTGATAACTGAAAAACATAGCACTGAGGTATTTTTTATTTTTAAA  4292

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4293  ATTGAAGGAAACAAAGTCTGGATCTAATTATTTTTACATTTACAAAAACTGCTACTGCTTGGCTCTTTTGCTAT  4366

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4367  AAGTTTAGGTTCTGAATACATGACAAGAGTATGGGAAAGAGCAGAATAATAGTACACGCAGTTTTAAAAGCTAT  4440

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4441  GCACATCATAACCTGGAATAATGATTACACAGCAAGAGGCCTGAGTGGAGGTAGGCTAACAACACATTTTGACT  4514

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4515  TTCTCCTCAAAGGATAGCTTTGAAAAACAAGTGTAACCAATTGTTACACCAAATTAAAATGGCAATATTAAATC  4588

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4589  GGTAACAAAACGATCCACATTTTATACAATATTGTATTTCCAAACATACATAGGTCATGAAAATCAGAGAACCT  4662

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4663  AATATAGCACCGTTGAAACCATTCATTATCCTTCATGTGTGTATGCAATTCAGAATTTCGGCAGAAGACAACAA  4736

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4737  ATGGAAAATGCCTTTCGTTTCTATAAATCATTTTGGATTTCAATTAAATCTTTGCCTTAGTAAAGGGTATTCTT  4810

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4811  ATCTCAAGATCAATTAGCCGTTTTTAGCTCCACCGTTTTGGAAGTAAAAATGATGAGCTACATCTACTTTTTAA  4884

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4885  TTTAAAACCAAGAACCAAGCAGTAAGGACAGCAATGTCAAGAATATCACATTGAGAACCACACAGAACATTATA  4958

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4959  AAGAATTTGGTGCATGTTTTAACAACTACCAACTGATGTTAACAATGAAAAATTTACAAAGGTAAAACTTTTTT  5032

Query  616  --------------------------  615
                                      
Sbjct 5033  TTTTTTTTTGCACTGACTGGTTTCAA  5058