Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12312
- Subject:
- XM_011248926.1
- Aligned Length:
- 2137
- Identities:
- 874
- Gaps:
- 1181
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCCGGAGGAGGCGAGCCTCCCGCCCGCTAAGAGATTCCGGCCGGGCTCCTGCCCTCCCGGGAGACGAGTAGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GATGCTGTTGACGGCTGGCGGCGGCGGCGGAGCTGGAGGAGGCCGGAGGCAGACGCCGCCGCTGGCCCAGCCTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGCCAGTCCCTACCGCGAGGCCCTGGAGCTGCAGCGCCGGAGTCTGCCCATCTTCCGGGCGCGGGGGCAGCTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTGGCTCAGCTCCGAAACCTGGACAACGCGGTCCTCATCGGGGAAACTGGCTCTGGGAAAACAACTCAGATCCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACAGTACCTCTATGAAGGGGGAATTAGCCGCCAGGGCATCATCGCTGTGACCCAGCCCCGTCGAGTGGCTGCCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCTCTCTTGCCACCAGAGTCTCAGATGAGAAGAGGACAGAACTCGGGAAGCTGGTTGGCTATACAGTGCGCTTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GAGGATGTCACCTCAGAAGACACCAGGATCAAGTTCCTGACAGATGGCATGCTTCTGCGTGAAGCAATTTCAGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTCCTTGCTTCGGAAGTACAGCTGTGTCATTTTGGACGAGGCCCATGAGCGGACTATTCACACAGATGTGCTCT 592
Query 1 -----------------------------------------------ATGC------AGGTGATTGTGATGTCA 21
.||| |.|||||||||||||||
Sbjct 593 TTGGAGTGGTGAAGACTGCACAGAAGAGGCGAAAGGAGCTAGGGAAACTGCCTCTCAAAGTGATTGTGATGTCA 666
Query 22 GCTACGATGGATGTGGACCTGTTCTCTCAGTATTTCAATGGCGCCCCCGTCCTCTACCTAGAGGGTCGGCAGCA 95
|||||.||||||||.||||||||.||||||||.||||||.|.|||||.|||||.|||||.||||||||||||||
Sbjct 667 GCTACCATGGATGTCGACCTGTTTTCTCAGTACTTCAATAGAGCCCCTGTCCTTTACCTTGAGGGTCGGCAGCA 740
Query 96 TCCGATCCAGGTGTTTTACACCAAACAGCCTCAGAATGATTACCTGCACGCCGCGCTTGTCTCCGTCTTCCAGA 169
|||.||||||.|.||.||.|||||||||||||||.|.|||||||||||.||.||.||||||||.||||||||||
Sbjct 741 TCCAATCCAGATCTTCTATACCAAACAGCCTCAGCAGGATTACCTGCATGCAGCCCTTGTCTCAGTCTTCCAGA 814
Query 170 TCCACCAGGAAGCCCCTTCTTCACAGGACATCCTGGTGTTCCTCACTGGGCAGGAGGAGATCGAAGCCATGAGC 243
|||||||||||||.|||.||||.||.|||||||||||||||||||||||.|||||||||||||||||.||||||
Sbjct 815 TCCACCAGGAAGCTCCTGCTTCTCAAGACATCCTGGTGTTCCTCACTGGTCAGGAGGAGATCGAAGCAATGAGC 888
Query 244 AAGACGTGCCGAGACATTGCAAAGCACCTCCCAGACGGCTGCCCTGCGATGCTGGTCCTTCCTCTGTACGCCTC 317
|||||.|||.|||||||.||||.||||||||||||.|||||||||.|.|||||.||||||||||||||||||||
Sbjct 889 AAGACCTGCAGAGACATCGCAAGGCACCTCCCAGATGGCTGCCCTTCAATGCTCGTCCTTCCTCTGTACGCCTC 962
Query 318 CCTGCCCTATGCACAGCAGCTCCGAGTCTTCCAAGGGGCCCCAAAGGGCTATCGCAAAGTGATCATTTCAACCA 391
||||||||||.|.||||||||.||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CCTGCCCTATTCGCAGCAGCTTCGAGTCTTTCAAGGGGCCCCAAAGGGCTATCGCAAAGTGATCATTTCAACCA 1036
Query 392 ACATCGCTGAAACCTCCATAACCATTACAGGAATAAAATATGTAGTTGACACGGGCATGGTTAAAGCAAAGAAG 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ACATCGCTGAAACCTCCATAACCATTACAGGAATAAAATATGTAGTTGACACGGGCATGGTTAAAGCAAAGAAG 1110
Query 466 TATAACCCTGACAGTGGTCTTGAGGTGTTAGCAGTGCAGCGGGTATCGAAGACGCAGGCTTGGCAGCGCACAGG 539
||||||||||||||||||||||||||..||||.||.|||.|.|||||.|||||.|||||.||||||||||||||
Sbjct 1111 TATAACCCTGACAGTGGTCTTGAGGTACTAGCTGTACAGAGAGTATCAAAGACCCAGGCCTGGCAGCGCACAGG 1184
Query 540 GAGGGCTGGCAGAGAGGACAGTGGCATCTGCTACCGGCTCTACACGGAGGACGAGTTTGAGAAGTTTGATAAGA 613
.||||||||..|||||||||||||||||||||||||.||||||||.||||||||||||||||||||.||.||||
Sbjct 1185 CAGGGCTGGGCGAGAGGACAGTGGCATCTGCTACCGACTCTACACTGAGGACGAGTTTGAGAAGTTCGAGAAGA 1258
Query 614 TGACCGTGCCAGAGATCCAGAGGTGTAACCTGGCCAGTGTGATGCTTCAGCTTCTAGCAATGAAAGTCCCAAAT 687
||||.|||||||||||||||||||||||||||||||||||.||.||||||||.|||||||||||||||||||||
Sbjct 1259 TGACGGTGCCAGAGATCCAGAGGTGTAACCTGGCCAGTGTAATACTTCAGCTCCTAGCAATGAAAGTCCCAAAT 1332
Query 688 GTGCTCACCTTTGACTTCATGTCGAAGCCATCTCCAGATCACATTCAGGCGGCCATTGCCCAACTGGACCTGTT 761
|||||||||||||||||||||||.||.||.|||||||||||||||.||||||||||||||||.|||||||||||
Sbjct 1333 GTGCTCACCTTTGACTTCATGTCCAAACCTTCTCCAGATCACATTGAGGCGGCCATTGCCCAGCTGGACCTGTT 1406
Query 762 AGGTGCTCTTGAACATAAGGATGACCAGCTTACCCTGACTCCAATGGGAAGAAAGATGGCAGCATTTCCTTTAG 835
|||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||.|||||||
Sbjct 1407 AGGTGCTCTTGAACATAAGGATGACCAGCTTACCCTGACTCCAATTGGAAGAAAGATGGCAGCATTCCCTTTAG 1480
Query 836 AACCCAAATTTGCCAAA-------------------------------------------ACCATCCTCATGTC 866
|.||||.|||||||||| ||.||||||.||||
Sbjct 1481 AGCCCAGATTTGCCAAAGTAAATGACCCCTCCTCCTCATTGCTCTTTCTCTGCCTTACAGACTATCCTCCTGTC 1554
Query 867 CCCCAAATTCCACTGTACAGAGGAGATCCTGACCATTGTCTCCCTGCTGTCTGTGGACAGCGTCCTCCACAACC 940
|.||||||||||||||||.||.|||||.||||||||.|||||||||||.|||||||||||.|||||..||||||
Sbjct 1555 CTCCAAATTCCACTGTACCGAAGAGATTCTGACCATAGTCTCCCTGCTATCTGTGGACAGTGTCCTTTACAACC 1628
Query 941 CTCCTTCCCGGCGAGAGGAAGTGCAAGGGGTCCGCAAGAAGTTCATATCCAGCGAGGGGGATCACATGACCCTG 1014
|||||.|||||.||||
Sbjct 1629 CTCCTGCCCGGAGAGA---------------------------------------------------------- 1644
Query 1015 CTCAATATCTATCGGACCTTCAAAAACCTAGGCGGAAATAAGGATTGGTGCAAAGAGAATTTTGTCAACAGCAA 1088
Sbjct 1645 -------------------------------------------------------------------------- 1644
Query 1089 GAATATGACGCTGGTAGCAGAAGTCAGAGCACAGCTGAGGGACATCTGCTTAAAGATGTCAATGCCAATCGCAT 1162
Sbjct 1645 -------------------------------------------------------------------------- 1644
Query 1163 CATCCCGAGGAGACGTGGAGAGTGTCCGCCGCTGCCTGGCTCACAGCCTCTTCATGAGCACCGCCGAGCTTCAG 1236
Sbjct 1645 -------------------------------------------------------------------------- 1644
Query 1237 CCAGATGGCACCTATGCCACCACGGACACCCACCAGCCAGTGGCCATCCACCCGTCGTCTGTCCTCTTCCACTG 1310
Sbjct 1645 -------------------------------------------------------------------------- 1644
Query 1311 CAAGCCGGCCTGCGTCGTGTACACTGAGCTGCTCTACACCAACAAGTGCTACATGCGGGACCTCTGCGTCATAG 1384
Sbjct 1645 -------------------------------------------------------------------------- 1644
Query 1385 ATGCACAGTGGCTGTACGAGGCTGCCCCTGAGTACTTTAGGAGGAAGCTGAGAACCGCCAGAAAC 1449
Sbjct 1645 ----------------------------------------------------------------- 1644
