Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12358
- Subject:
- XM_006513140.2
- Aligned Length:
- 3206
- Identities:
- 1243
- Gaps:
- 1783
Alignment
Query 1 ---------------------------------------------------------ATGCGAGTTCAGCTTCT 17
||||||||||||||.||
Sbjct 1 ATGAAAATCCGAGCCCAGCTGGTAGAACAACAAAAATGCCTGGAGCAGCAGACAGAGATGCGAGTTCAGCTGCT 74
Query 18 CCAGGATCTGCAAGATTTCTTCCGAAAAAAAGCTGAAATTGAGACGGAATATTCCCGGAATCTAGAGAAGTTAG 91
||||||.||.||||||||||||||.||||||||.||||||||||||||||||||.|||||.||.||||||.|.|
Sbjct 75 CCAGGACCTACAAGATTTCTTCCGGAAAAAAGCCGAAATTGAGACGGAATATTCTCGGAACCTGGAGAAGCTGG 148
Query 92 CAGAAAGGTTCATGGCAAAAACAAGAAGCACTAAGGATCATCAACAATACAAGAAAGACCAGAACCTGTTGTCT 165
||||||||||||||||.||||||||||||||||||||.||||||||.|.||||||||||||.||||||||||||
Sbjct 149 CAGAAAGGTTCATGGCCAAAACAAGAAGCACTAAGGACCATCAACAGTTCAAGAAAGACCAAAACCTGTTGTCT 222
Query 166 CCAGTGAACTGCTGGTATTTGCTCCTGAACCAAGTAAGGAGAGAAAGCAAAGACCATGCAACCTTGAGTGACAT 239
|||||||||||||||||||||||||||||||||||.||.|||||.|||||||||||.||.||.|||||||||||
Sbjct 223 CCAGTGAACTGCTGGTATTTGCTCCTGAACCAAGTGAGAAGAGAGAGCAAAGACCACGCCACTTTGAGTGACAT 296
Query 240 CTATCTGAACAATGTGATTATGCGGTTCATGCAGATAAGTGAGGATTCTACCAGGATGTTTAAAAAGAGCAAAG 313
|||||||||||||||.||.||||||||||||||||||||.|||||.||.|||.|||||||||||||||||||||
Sbjct 297 CTATCTGAACAATGTCATCATGCGGTTCATGCAGATAAGCGAGGACTCCACCCGGATGTTTAAAAAGAGCAAAG 370
Query 314 AGATTGCATTCCAACTTCATGAGGATTTAATGAAGGTTCTTAATGAGCTTTATACGGTGATGAAAACATACCAT 387
|||||||.|||||.|||||.|||||..|.|||||||||||.||||||||.||.||||||||||||||.|||||.
Sbjct 371 AGATTGCGTTCCAGCTTCACGAGGACCTCATGAAGGTTCTGAATGAGCTCTACACGGTGATGAAAACCTACCAC 444
Query 388 ATGTATCATGCAGAGAGCATCAGTGCAGAGAGCAAGCTGAAAGAGGCCGAAAAACAAGAGGAAAAGCAAATTGG 461
|||||.||..||||||||||||||||||||||.|||||||||||.|||||.|||||||||||.|||||.|||||
Sbjct 445 ATGTACCACTCAGAGAGCATCAGTGCAGAGAGTAAGCTGAAAGAAGCCGAGAAACAAGAGGAGAAGCAGATTGG 518
Query 462 GAGATCTGGTGATCCAGTCTTCCATATTCGACTAGAGGAGAGACATCAACGGCGAAGCTCTGTAAAGAAAATTG 535
|||.||.||.||.|||||||||||.|||.|.||.||.|||||.|||||..||||.||||||||.||||||||||
Sbjct 519 GAGGTCCGGCGACCCAGTCTTCCACATTAGGCTGGAAGAGAGGCATCAGAGGCGGAGCTCTGTGAAGAAAATTG 592
Query 536 AAAAAATGAAAGAAAAAAGACAAGCAAAATATTCAGAAAATAAGCTAAAATCAATTAAGGCACGGAACGAATAT 609
||||||||||.|||||.|||||||||||||||||||||||||||||.|||||.||.||.||.||.|||||.|||
Sbjct 593 AAAAAATGAAGGAAAAGAGACAAGCAAAATATTCAGAAAATAAGCTGAAATCGATCAAAGCCCGCAACGAGTAT 666
Query 610 CTCCTAACACTTGAAGCCACCAATGCCTCAGTTTTCAAGTACTATATTCATGATCTTTCTGATTTAATTGATTG 683
|||||||||||||||||.|||||.|||||.||.||||||||.||.||.|||||||||||.||.|||||.||.||
Sbjct 667 CTCCTAACACTTGAAGCAACCAACGCCTCCGTGTTCAAGTATTACATCCATGATCTTTCAGACTTAATAGACTG 740
Query 684 CTGTGATCTTGGCTACCATGCAAGTCTGAACAGAGCCCTAAGAACATATCTGTCTGCGGAGTACAACCTTGAAA 757
|||||||||.|||||||||||||||||||||||||||||.|||||.||.||.||.|||||||||||||||||||
Sbjct 741 CTGTGATCTCGGCTACCATGCAAGTCTGAACAGAGCCCTCAGAACGTACCTCTCGGCGGAGTACAACCTTGAAA 814
Query 758 CCTCCAGACATGAGGGCTTAGACATTATTGAGAATGCAGTTGATAATTTAGAGCCCAGGAGCGATAAGCAGAGA 831
||||||||||.||.|||||||||||.|||||.||.||.||.||.|||||||||||||||||.||.||||||||.
Sbjct 815 CCTCCAGACACGAAGGCTTAGACATCATTGAAAACGCTGTGGACAATTTAGAGCCCAGGAGTGACAAGCAGAGG 888
Query 832 TTCATGGAGATGTACCCTGCTGCGTTCTGTCCACCAATGAAGTTTGAGTTTCAGTCTCACATGGGTGATGAGGT 905
||||||||||||||||||||.||.|||||.||.||||||||.||.|||||||||||||||||||||||||||||
Sbjct 889 TTCATGGAGATGTACCCTGCGGCATTCTGCCCGCCAATGAAATTCGAGTTTCAGTCTCACATGGGTGATGAGGT 962
Query 906 GTGCCAGGTCAGTGCCCAGCAGCCAGTCCAGGCAGAGCTCATGCTCAGGTACCAACAGTTGCAGTCCCGCCTTG 979
|||.||||||||.|||||||||||.||||||||.|||||||||||||||.||||||||.||||||||||.||.|
Sbjct 963 GTGTCAGGTCAGCGCCCAGCAGCCCGTCCAGGCGGAGCTCATGCTCAGGAACCAACAGCTGCAGTCCCGACTGG 1036
Query 980 CCACGCTCAAAATCGAGAATGAAGAGGTTAAGAAAACGACTGAAGCCACCTTGCAGACGATACAAGATATGGTC 1053
||||.|||||.|||||||..||.|||||.|||||||||||.|||||||||.|.||||||||.||||||||||||
Sbjct 1037 CCACACTCAAGATCGAGAGCGAGGAGGTCAAGAAAACGACAGAAGCCACCCTCCAGACGATCCAAGATATGGTC 1110
Query 1054 ACCATCGAGGACTATGATGTTTCTGAATGCTTCCAGCACAGTCGTTCCACAGAATCTGTGAAGTCCACTGTCTC 1127
|||||.||||||||||||||.|||||.||.|||||||||||.||.||||||||.|||||||||||||||||.||
Sbjct 1111 ACCATTGAGGACTATGATGTGTCTGAGTGTTTCCAGCACAGCCGATCCACAGAGTCTGTGAAGTCCACTGTGTC 1184
Query 1128 TGAAACCTACCTGAGTAAACCCAGCATCGCCAAGAGAAGAGCCAACCAGCAGGAAACTGAACAGTTCTACTTCA 1201
.||||||||||||||||||||||||||||||||||||.|||||||||||||.|||||.||.|||||||||||||
Sbjct 1185 AGAAACCTACCTGAGTAAACCCAGCATCGCCAAGAGACGAGCCAACCAGCAAGAAACGGAGCAGTTCTACTTCA 1258
Query 1202 TGAAACTCAGAGAATATTTGGAAGGCAGTAATCTCATCACAAAACTTCAAGCCAAACATGACTTGCTGCAGAGG 1275
|||||||..||||.|...|||||||||||||.|||||||||||.||.||.||.||.||||||||||||||||||
Sbjct 1259 TGAAACTTCGAGAGTTCCTGGAAGGCAGTAACCTCATCACAAAGCTGCAGGCTAAGCATGACTTGCTGCAGAGG 1332
Query 1276 ACCCTGGGAGAAGG---------TGAGT-TA-------------TCCAAA------------------------ 1302
||.||.|||||||| |||.| || ||||||
Sbjct 1333 ACTCTTGGAGAAGGCCATAGAGCTGAATATATGACTACAAGGCCTCCAAACGTCCCCCCTAAGCCCCAGAAACA 1406
Query 1303 ----ATGT---------------------ATGGGAAGATG----ACCTGGAT---GATACA-TCGTATCATGTA 1343
|.|| |||..|||.|| |...|||| ||.||| ||| |||.|.|
Sbjct 1407 CAGGAAGTCCAGGCCCCGCTCCCAGTATAATGCTAAGTTGTTTAATGGGGATTTGGAGACATTCG--TCAAGGA 1478
Query 1344 ------------TAT-------ATTCCAGAAA---------GAGT-ATGAAT-TGTATATTTGTGCTTTAAGAA 1387
||| |||...|||| ||.| ||.||| |.||| .||.||.||.|
Sbjct 1479 CTCAGGCCAGGTTATCCCTCTCATTGTGGAAAGCTGCATCCGATTCATTAATCTCTAT-----GGCCTTCAGCA 1547
Query 1388 GCAGAGGACACTCTGTGTTTAGA---TTTGGTT----------------------------TTGTTTGTA---- 1426
.|||.||| |.||.||| |.|||.| ||.|||..|
Sbjct 1548 CCAGGGGA-------TTTTCAGAGTGTCTGGCTCCCAGGTGGAAGTGAACGATATCAAGAATTCTTTCGAGAGA 1614
Query 1427 -----------TATGTC--ATGAT-------------------------------------------------- 1437
|.|||| ||||.
Sbjct 1615 GGTGAGAACCCTCTGTCCGATGAGCAGAGCAACCACGATATCAACTCGGTGGCCGGCGTGCTGAAGCTGTACTT 1688
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 1689 CCGAGGGCTGGAAAACCCCCTCTTTCCTAAGGAAAGGTTTACTGACCTGATTTCCTGTATCAGAATAGATAACC 1762
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 1763 TCTATGAGAGGGCGCTCCACATCCGCAAACTCCTCCTGACCTTGCCCAGGTCGGTCCTTATAGTGATGAGGTAC 1836
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 1837 CTGTTTGCCTTCCTCAATCACCTCTCCCAGTACAGTGACGAGAACATGATGGACCCTTACAATCTGGCCATTTG 1910
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 1911 CTTCGGCCCAACACTGATGCCGGTTCCAGAGATACAGGACCAAGTGTCTTGCCAGGCACACGTGAACGAGATTG 1984
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 1985 TGAAGACCATCATCATCCATCACGAGACTATTTTCCCAGATGCTAAAGAACTGGACGGCCCCGTGTATGAGAAA 2058
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2059 TGCATGGCCGGAGGCGACTACTGCGACAGCCCCTACAGTGAGCATGGTACATTGGAGGAGGTGGACCAAGACGC 2132
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2133 CGGCACAGAGCCCCACACCAGTGAAGACGAGTGTGAGCCCATCGAAGCCATAGCCAAGTTTGACTACGTCGGGC 2206
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2207 GGTCAGCTAGAGAGCTGTCCTTCAAGAAGGGTGCATCCCTGCTGCTGTATCACCGAGCCTCCGAGGATTGGTGG 2280
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2281 GAAGGCAGACACAACGGGATCGATGGCCTTGTGCCTCATCAGTACATAGTTGTGCAAGATATGGACGATACATT 2354
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2355 TTCAGACACGCTGAGCCAAAAGGCCGACAGCGAAGCCAGCAGCGGGCCAGTCACTGAAGACAAGTCCTCATCCA 2428
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2429 AGGACATGAACTCCCCGACTGACCGCCATTCTGATAGCTATTTAGCCAGACAAAGAAAGAGAGGAGAGCCACCC 2502
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2503 CCTCCGGGAAGACGTCCCGGCAGGACCAGCGATGGCCATTGTCCCCTGCATCCCCCGCATGCTCTGTCTAACTC 2576
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2577 CTCAATTGATCTGGGATCCCCAAACCTAGCCAGTCACCCCAGGGGCCTGTTGCAGAACCGTGGCCTCAATAATG 2650
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2651 ACAGTCCTGAGAGGCGGCGCCGGCCGGGCCACGGCAGCCTGACCAATATCAGCCGGCATGACTCCCTCAAGAAG 2724
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2725 ATCGACAGCCCTCCTATCCGGAGGTCCACATCATCAGGGCAGTACACAGGCTTCAATGACCACAAGCCACTGGA 2798
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2799 CCCCGAGACGATTGCTCAGGATATTGAGGAGACCATGAACACTGCTTTGAACGAACTCCGTGAACTCGAGAGGC 2872
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2873 AGAGCACAGTGAAGCACGCCCCCGATGTCGTGCTAGACACTTTGGAGCAAGTGAAGAACTCGCCCACCCCTGCG 2946
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2947 ACTTCCACAGAATCACTCAGCCCACTGCACAATGTCGCCCTCAGGGGCTCAGAGCCACAGATTCGCCGGAGCAC 3020
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 3021 CAGCTCCTCCAGCGAGACAATGAGTACTTTCAAGCCTATGGTGGCGCCCCGGATGGGCGTCCAGCTGAAGCCCC 3094
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 3095 CAGCCCTTAGGCCAAAGCCTGCTGTTCTTCCAAAAACAAACCCTACGATGGGACCTGCCGCACCTTCCCAGGGT 3168
Query 1438 ------------------------ 1437
Sbjct 3169 CCCACAGACAAGTCTTGCACGATG 3192
