Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12372
Subject:
NM_001303516.1
Aligned Length:
2325
Identities:
2064
Gaps:
261

Alignment

Query    1  ATGGGATGTAATATGTGCGTGGTCCAGAAACCGGAGGAGCAGTACAAAGTGATGCTGCAGGTGAACGGGAAGGA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GCTCTCCAAGCTGTCTCAGGAGCAAACTCTGCAGGCCCTGCGCTCCTCCAAGGAGCCCCTGGTGATCCAGGTGC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TGAGACGCAGCCCCCGCCTCCGGGGGGACAGCTCCTGTCACGACCTGCAGCTGGTGGACAGTGGCACTCAGACC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  GACATCACCTTCGAGCATATCATGGCGCTGGGCAAGCTGCGTCCGCCCACCCCGCCCATGGTCATCCTGGAGCC  296
                                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ---------------------ATGGCGCTGGGCAAGCTGCGTCCGCCCACCCCGCCCATGGTCATCCTGGAGCC  53

Query  297  GTACGTCCTCTCTGAGCTCCCCCCAATCAGCCATGAGTATTATGACCCGGCGGAGTTTATGGAGGGCGGCCCGC  370
                              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   54  ------------------CCCCCCAATCAGCCATGAGTATTATGACCCGGCGGAGTTTATGGAGGGCGGCCCGC  109

Query  371  AGGAGGCAGACCGCTTGGATGAGCTGGAGTATGAGGAGGTGGAGCTGTATAAAAGCAGCCACCGGGACAAGCTG  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  110  AGGAGGCAGACCGCTTGGATGAGCTGGAGTATGAGGAGGTGGAGCTGTATAAAAGCAGCCACCGGGACAAGCTG  183

Query  445  GGCCTGATGGTTTGCTACCGCACGGACGACGAGGAGGACCTGGGCATTTATGTCGGAGAGGTAAATCCCAACAG  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  184  GGCCTGATGGTTTGCTACCGCACGGACGACGAGGAGGACCTGGGCATTTATGTCGGAGAGGTAAATCCCAACAG  257

Query  519  CATTGCAGCCAAAGACGGCCGGATCCGTGAGGGAGACCGCATCATCCAGATTAACGGTGTAGACGTCCAGAACC  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  258  CATTGCAGCCAAAGACGGCCGGATCCGTGAGGGAGACCGCATCATCCAGATTAACGGTGTAGACGTCCAGAACC  331

Query  593  GGGAAGAGGCGGTGGCCATCCTGAGCCAGGAAGAGAACACCAACATCTCCCTGCTGGTGGCCCGACCTGAGAGT  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  332  GGGAAGAGGCGGTGGCCATCCTGAGCCAGGAAGAGAACACCAACATCTCCCTGCTGGTGGCCCGACCTGAGAGT  405

Query  667  CAGCTGGCGAAAAGGTGGAAGGACAGCGACCGGGATGACTTCCTGGATGACTTTGGCTCTGAGAATGAGGGGGA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  406  CAGCTGGCGAAAAGGTGGAAGGACAGCGACCGGGATGACTTCCTGGATGACTTTGGCTCTGAGAATGAGGGGGA  479

Query  741  GCTGCGTGCTCGTAAACTGAAATCACCCCCTGCCCAGCAGCCCGGAAACGAAGAGGAGAAGGGGGCTCCCGATG  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  480  GCTGCGTGCTCGTAAACTGAAATCACCCCCTGCCCAGCAGCCCGGAAACGAAGAGGAGAAGGGGGCTCCCGATG  553

Query  815  CCGGCCCAGGCCTGAGCAACAGCCAGGAGCTGGACAGCGGGGTGGGCCGGACTGACGAGAGCACCCGGAACGAA  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  554  CCGGCCCAGGCCTGAGCAACAGCCAGGAGCTGGACAGCGGGGTGGGCCGGACTGACGAGAGCACCCGGAACGAA  627

Query  889  GAGAGCTCTGAGCACGACCTGCTGGGGGACGAACCCCCGAGCTCCACCAACACCCCGGGAAGCCTGCGCAAGTT  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  628  GAGAGCTCTGAGCACGACCTGCTGGGGGACGAACCCCCGAGCTCCACCAACACCCCGGGAAGCCTGCGCAAGTT  701

Query  963  TGGCCTGCAAGGGGACGCCCTGCAGAGCCGGGACTTCCATTTCAGCATGGACTCTCTGCTGGCCGAGGGGGCGG  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  702  TGGCCTGCAAGGGGACGCCCTGCAGAGCCGGGACTTCCATTTCAGCATGGACTCTCTGCTGGCCGAGGGGGCGG  775

Query 1037  GGCTGGGAGGGGGCGACGTCCCGGGCCTCACGGATGAGGAGTATGAGCGCTACCGTGAGCTCCTGGAGATCAAG  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  776  GGCTGGGAGGGGGCGACGTCCCGGGCCTCACGGATGAGGAGTATGAGCGCTACCGTGAGCTCCTGGAGATCAAG  849

Query 1111  TGCCACCTGGAGAACGGCAACCAGCTGGGCCTCCTCTTTCCCCGGGCCTCCGGAGGCAACAGCGCCCTGGACGT  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  850  TGCCACCTGGAGAACGGCAACCAGCTGGGCCTCCTCTTTCCCCGGGCCTCCGGAGGCAACAGCGCCCTGGACGT  923

Query 1185  CAACCGCAACGAGAGCCTGGGCCACGAGATGGCCATGCTGGAGGAGGAGCTAAGGCACCTGGAATTCAAGTGCC  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  924  CAACCGCAACGAGAGCCTGGGCCACGAGATGGCCATGCTGGAGGAGGAGCTAAGGCACCTGGAATTCAAGTGCC  997

Query 1259  GCAACATACTGCGGGCGCAGAAGATGCAGCAGCTGCGTGAGCGCTGCATGAAGGCCTGGCTGCTGGAGGAGGAG  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  998  GCAACATACTGCGGGCGCAGAAGATGCAGCAGCTGCGTGAGCGCTGCATGAAGGCCTGGCTGCTGGAGGAGGAG  1071

Query 1333  AGCCTCTACGACCTGGCGGCCAGCGAGCCCAAGAAGCACGAGCTGTCCGACATCTCCGAGCTGCCCGAGAAGTC  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072  AGCCTCTACGACCTGGCGGCCAGCGAGCCCAAGAAGCACGAGCTGTCCGACATCTCCGAGCTGCCCGAGAAGTC  1145

Query 1407  GGACAAGGACAGCACCAGCGCCTACAACACTGGGGAGAGCTGCCGCAGCACCCCGCTGCTTGTGGAGCCCCTGC  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146  GGACAAGGACAGCACCAGCGCCTACAACACTGGGGAGAGCTGCCGCAGCACCCCGCTGCTTGTGGAGCCCCTGC  1219

Query 1481  CCGAGAGCCCCCTGCGGCGGGCCATGGCCGGCAACTCCAACTTGAACCGGACCCCTCCCGGCCCCGCTGTTGCC  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220  CCGAGAGCCCCCTGCGGCGGGCCATGGCCGGCAACTCCAACTTGAACCGGACCCCTCCCGGCCCCGCTGTTGCC  1293

Query 1555  ACCCCCGCCAAGGCAGCTCCTCCACCGGGGAGCCCCGCCAAGTTCCGGTCCCTCTCCCGGGATCCTGAGGCCGG  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294  ACCCCCGCCAAGGCAGCTCCTCCACCGGGGAGCCCCGCCAAGTTCCGGTCCCTCTCCCGGGATCCTGAGGCCGG  1367

Query 1629  CCGGAGGCAGCACGCGGAGGAGCGCGGCCGCCGCAACCCCAAGACGGGGTTGACCCTGGAGCGTGTGGGCCCTG  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368  CCGGAGGCAGCACGCGGAGGAGCGCGGCCGCCGCAACCCCAAGACGGGGTTGACCCTGGAGCGTGTGGGCCCTG  1441

Query 1703  AAAGCAGCCCTTACCTCTCGCGGCGCCACCGCGGCCAGGGCCAGGAGGGCGAGCACTACCACAGCTGCGTGCAG  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442  AAAGCAGCCCTTACCTCTCGCGGCGCCACCGCGGCCAGGGCCAGGAGGGCGAGCACTACCACAGCTGCGTGCAG  1515

Query 1777  CTGGCCCCGACGCGAGGCCTGGAGGAGCTGGGCCACGGCCCCCTGAGCTTGGCCGGTGGCCCTCGGGTGGGCGG  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516  CTGGCCCCGACGCGAGGCCTGGAGGAGCTGGGCCACGGCCCCCTGAGCTTGGCCGGTGGCCCTCGGGTGGGCGG  1589

Query 1851  GGTGGCGGCCGCGGCCACTGAAGCACCGCGCATGGAGTGGAAAGTGAAGGTGCGCAGCGACGGAACCCGCTACG  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1590  GGTGGCGGCCGCGGCCACTGAAGCACCGCGCATGGAGTGGAAAGTGAAGGTGCGCAGCGACGGAACCCGCTACG  1663

Query 1925  TGGCCAAGCGGCCCGTGCGAGATCGGCTGCTGAAAGCCCGTGCCCTGAAGATCCGGGAGGAGCGCAGCGGTATG  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664  TGGCCAAGCGGCCCGTGCGAGATCGGCTGCTGAAAGCCCGTGCCCTGAAGATCCGGGAGGAGCGCAGCGGTATG  1737

Query 1999  ACGACCGACGACGACGCGGTGAGCGAGATGAAGATGGGCCGCTACTGGAGCAAGGAGGAGCGGAAGCAGCACCT  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738  ACGACCGACGACGACGCGGTGAGCGAGATGAAGATGGGCCGCTACTGGAGCAAGGAGGAGCGGAAGCAGCACCT  1811

Query 2073  GATCCGGGCCCGTGAGCAGCGGAAGCGGCGCGAGTTCATGATGCAGAGCCGGCTGGAGTGCCTGCGGGAGCAGC  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1812  GATCCGGGCCCGTGAGCAGCGGAAGCGGCGCGAGTTCATGATGCAGAGCCGGCTGGAGTGCCTGCGGGAGCAGC  1885

Query 2147  AGAATGGCGACAGCAAGCCCGAGCTCAACATCATTGCCCTGAGCCACCGCAAAACCATGAAGAAGCGGAACAAG  2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1886  AGAATGGCGACAGCAAGCCCGAGCTCAACATCATTGCCCTGAGCCACCGCAAAACCATGAAGAAGCGGAACAAG  1959

Query 2221  AAGATCCTGGACAACTGGATCACCATCCAGGAGATGCTGGCCCACGGCGCGCGCTCCGCCGATGGCAAGCGGGT  2294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960  AAGATCCTGGACAACTGGATCACCATCCAGGAGATGCTGGCCCACGGCGCGCGCTCCGCCGATGGCAAGCGGGT  2033

Query 2295  CTACAACCCTCTTCTCTCAGTCACCACCGTG  2325
            |||||||||||||||||||||||||||||||
Sbjct 2034  CTACAACCCTCTTCTCTCAGTCACCACCGTG  2064

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