Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12570
- Subject:
- NM_172965.2
- Aligned Length:
- 3171
- Identities:
- 1811
- Gaps:
- 1116
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAGTTCCCAGCAGTTTCCTCGGTTAGGAACCCCTTCCCCTGGGCTTAGCCAGCCACCTTCACAGATTGCAAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGTGGTTCCGCAGGACTGATAAACCAAGTTGCCACAGTTAATGATGAGGCTGGCCGAGATGCTGATGTTGGTA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCAGGGAGCACGTGGGCCCTAGCAGCTCCCTGCCGCCCCGGGAAGAGAAGCAGGAGCCAGTTGTGGTAAGGCCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TATCCACAGGTACAGATGCTGCCTGCACACCATGCTGTCGCCTCAGCCACCCCTGTCGCAGTGACAGCCCCGCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGCACACCTGACACCAGCAGTACCACTCTCTTTTTCGGAAGGACTTATGAAGCCGCCCCCGAAGCCTACCATGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTAGCCGTCCCATTGCGCCTGCTCCCCCTTCTACCATGTCACTTCCCCCGAAAGTTCCCGGGCAGGTTACTGTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACCATGGAGAGCAGCATCCCTCAAGCTTCAGCCATTCCCGTGGCAACAATCAGTGGACAACAGGGGCATCCCAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TAACCTGCATCACATTATGACCACAAATGTGCAGATGTCCATAATCCGCAGCAACGCTCCCGGGCCCCCACTTC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ACATTGGAGCTTCCCACTTACCTCGAGGTGCAGCTGCTGCCGCTGTGATGTCCAGCTCTAAAGTAACTACAGTC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTGAGGCCAACTTCACAGCTGCCAAATGCTGCTACGGCGCAGCCAGCAGTACAGCACCTCATTCACCAGCCAAT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCAGTCTCGGCCACCTGTGACCACCTCCAGTACAATCCCTCCTGCTGTAGTAGCAACAGTCTCAGCCACCAGAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CGCAGTCTCCTGTCATCACTACGACAGCGGCCCACGCGGCTGACTCGACGCTCAGTCGGCCCACTTTATCTATC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CAGCATCCACCATCTGCAGCCATTAGTATCCAGCGTCCTGCACAGTCTCGAGATGTGACAACAAGAATCACACT 962
Query 1 ----------------------------------------------ATGGCTCAGAAAACAATCTTCAGTACTG 28
||||||||||||||.|||||.|||||||
Sbjct 963 ACCTTCTCATCCTGCGTTAGGGACTCCGAAACAGCAGCTCCATACAATGGCTCAGAAAACCATCTTTAGTACTG 1036
Query 29 GCACGCCAGTGGCTGCAGCCACAGTAGCACCTATTTTGGCAACCAACACCATTCCTTCAGCGACCACAGCTGGA 102
||||.||||||||||||||.|||||||||||||||.|||||||||||||..||||||||.|.||||||||||||
Sbjct 1037 GCACACCAGTGGCTGCAGCTACAGTAGCACCTATTCTGGCAACCAACACGCTTCCTTCAACAACCACAGCTGGA 1110
Query 103 TCTGTGTCACACACGCAAGCTCCCACAAGTACCATTGTTACCATGACAGTACCCTCCCATTCCTCCCATGCTAC 176
||||||||.|||||.|||||||||||||||||.|||||||||||||||.|.|||||||||||.|||||||||||
Sbjct 1111 TCTGTGTCGCACACACAAGCTCCCACAAGTACAATTGTTACCATGACAATGCCCTCCCATTCATCCCATGCTAC 1184
Query 177 TGCTGTGACCACCTCAAACATCCCAGTCGCCAAGGTGGTGCCCCAGCAGATCACGCACACTTCTCCTCGGATCC 250
||||||||||||.|||||.||||||||.||.|||||||||||||||||||||||.||||||||.||||||||||
Sbjct 1185 TGCTGTGACCACTTCAAATATCCCAGTTGCTAAGGTGGTGCCCCAGCAGATCACACACACTTCCCCTCGGATCC 1258
Query 251 AGCCAGACTACCCTGCCGAGAGGAGTAGCCTGATTCCCATCTCCGGACATCGGGCCTCTCCCAATCCTGTGGCC 324
||||.||.||||||.|.|||||||||||||||||||||||.|||||.||||||||||||||.|||||.||||||
Sbjct 1259 AGCCTGATTACCCTCCAGAGAGGAGTAGCCTGATTCCCATTTCCGGCCATCGGGCCTCTCCAAATCCAGTGGCC 1332
Query 325 ATGGAAACCCGAAGTGACAACAGACCGTCTGTTCCCGTTCAGTTCCAATATTTTTTGCCAACTTACCCCCCTTC 398
|||||||||||||.||||||||||||.||.|||||.|||||||||||.||.||.||||||||||||||.||.||
Sbjct 1333 ATGGAAACCCGAAATGACAACAGACCTTCCGTTCCTGTTCAGTTCCAGTACTTCTTGCCAACTTACCCACCCTC 1406
Query 399 TGCATACCCACTGGCGGCACATACCTACACCCCAATCACCAGTTCCGTGTCCACTATCCGACAGTATCCAGTTT 472
|||.|||||.|||||.|||||.|||||||||||.||||||||.||.||||||||||||||.|||||.|||||||
Sbjct 1407 TGCCTACCCGCTGGCTGCACACACCTACACCCCCATCACCAGCTCTGTGTCCACTATCCGGCAGTACCCAGTTT 1480
Query 473 CAGCTCAGGCTCCAAACTCTGCCATCACAGCTCAGACTGGTGTTGGGGTAGCGTCTACCGTCCACCTAAACCCC 546
|.|||||.||.||||||||..|||||||||||||.|||||||||||.|||||.|||||.||||||||.||||||
Sbjct 1481 CTGCTCAAGCCCCAAACTCCACCATCACAGCTCAAACTGGTGTTGGTGTAGCATCTACAGTCCACCTGAACCCC 1554
Query 547 ATGCAGTTGATGACAGTGGATGCATCGCATGCTCGACATATTCAAGGGATCCAGCCAGCACCCATCAGTACCCA 620
||||||.||||||||||||||||.||.|||||.||||||||.||.||||||||||||||||||||||||||.||
Sbjct 1555 ATGCAGCTGATGACAGTGGATGCCTCACATGCCCGACATATCCAGGGGATCCAGCCAGCACCCATCAGTACACA 1628
Query 621 GGGTATCCAGCCGGCCCCCATTGGGACCCCAGGGATACAGCCTGCACCACTTGGCACACAGGGAATTCACTCAG 694
|||.||||||||.||||||||||||||..|||||||.|||||.||||||.|||||||.|..|||||.||.||||
Sbjct 1629 GGGAATCCAGCCAGCCCCCATTGGGACATCAGGGATCCAGCCAGCACCAATTGGCACCCCAGGAATCCATTCAG 1702
Query 695 CAACCCCAATCAACACACAAGGGCTTCAGCCTGCACCTATGGGTACTCAGCAGCCTCAGCCTGAAGGAAAGACT 768
||.|||||||||||||.||.|||||||||||.|||.|.||||.||.|||||||||.||||||||.||.||.||.
Sbjct 1703 CAGCCCCAATCAACACTCAGGGGCTTCAGCCAGCAGCAATGGCTAATCAGCAGCCACAGCCTGAGGGGAAAACC 1776
Query 769 TCAGCAGTGGTGTTGGCAGATGGAGCCACAATTGTGGCCAACCCTATTAGCAATCCATTCAGTGCTGCTCCAGC 842
| ||||||||||||||||||||||.||||||||.|||||||||||||||||.||||||||||||||||||||
Sbjct 1777 T---CAGTGGTGTTGGCAGATGGAGCTACAATTGTAGCCAACCCTATTAGCAACCCATTCAGTGCTGCTCCAGC 1847
Query 843 AGCAACAACCGTGGTGCAGACCCACAGCCAGAGTGCTAGCACCAACGCTCCCGCCCAGGGCTCATCGCCACGGC 916
.|||||.||.|||||.|||||.|||||.||||||||||||||||||.|.||.|||||||||||.||.||.||||
Sbjct 1848 GGCAACCACAGTGGTCCAGACACACAGTCAGAGTGCTAGCACCAACACACCAGCCCAGGGCTCTTCTCCCCGGC 1921
Query 917 CAAGCATACTCCGGAAGAAACCTGCCACAGAT------------------------------------------ 948
|.||||||||.|||||||||||||||||||||
Sbjct 1922 CCAGCATACTGCGGAAGAAACCTGCCACAGATGGGATGGCAGTCCGGAAAACTCTCCTCCCTCCTCAGCCTCCT 1995
Query 949 ---------------------------------------------------------------GGTGCCAAACC 959
|||||||||||
Sbjct 1996 GACGTGGCTACTCCTCGAGTAGAAAGCTCTATGCGGAGTGCTTCTGGGTCACCTAGACCTGCAGGTGCCAAACC 2069
Query 960 CAAGTCTGAAATCCACGTGTCTATGGCCACTCCGGTCACTGTGTCCATGGAGACTGTATCCAATCAAAATAATG 1033
.||.||.|||.|.||.||||||||.||||||||.||.||.||||||.|||||||..||||||||||||||...|
Sbjct 2070 TAAATCCGAAGTGCATGTGTCTATAGCCACTCCAGTTACAGTGTCCTTGGAGACCATATCCAATCAAAATGCCG 2143
Query 1034 ATCAGCCTACCATTGCCGTCCCTCCAACTGCCCAGCAGCCCCCACCGACCATTCCAACTATGATTGCAGCAGCC 1107
|.|||||||||.||||.||||||||.||||||||||||||.||||||||||||||.|..||||||||.||||||
Sbjct 2144 AACAGCCTACCGTTGCTGTCCCTCCGACTGCCCAGCAGCCTCCACCGACCATTCCCAGCATGATTGCGGCAGCC 2217
Query 1108 AGTCCCCCGTCACAACCAGCCGTTGCCCTTTCAACCATTCCTGGAGCGGTCCCCATCACTCCACCCATCACCAC 1181
|||||.||.||.|||||||||.||||||||||.||||||||.|||||.||.||..|||||||||||||||||||
Sbjct 2218 AGTCCTCCATCCCAACCAGCCATTGCCCTTTCCACCATTCCCGGAGCCGTGCCTGTCACTCCACCCATCACCAC 2291
Query 1182 CATTGCAGCTGCACCACCTCCATCAGTCACTGTGGGTGGCAGTCTTTCCTCCGTCTTGGGCCCTCCCGTTCCTG 1255
||||||.||..|||||.|.|..||||.|.|.|||||.||||.||.||||.|.|||.||||.|||||.|||||||
Sbjct 2292 CATTGCTGCCACACCAACGCTGTCAGCCCCAGTGGGCGGCACTCCTTCCACGGTCCTGGGGCCTCCTGTTCCTG 2365
Query 1256 AAATTAAAGTGAAAGAAGAAGTAGAACCAATGGATATCATGAGGCCAGTTTCTGCAGTTCCTCCACTGGCTACC 1329
|.||.||||||||.|||||||..||.|||.||||.||||..|||||.||.||..||||.|||||.|||||.|||
Sbjct 2366 AGATCAAAGTGAAGGAAGAAGCGGAGCCAGTGGACATCACCAGGCCTGTCTCCACAGTCCCTCCTCTGGCCACC 2439
Query 1330 AACACTGTGTCTCCATCTCTTGCATTGCTGGCAAACAACTTGTCCATGCCTACAAGTGACCTACCACCTGGTGC 1403
|||||.|||||||||||||||||.||||||||||.||||.|||||||||||.||||||||||.|||||||||||
Sbjct 2440 AACACGGTGTCTCCATCTCTTGCTTTGCTGGCAAGCAACCTGTCCATGCCTCCAAGTGACCTCCCACCTGGTGC 2513
Query 1404 CTCCCCAAGGAAAAAGCCTCGAAAGCAACAGCATGTGATCTCAACAGAAGAAGGTGACATGATGGAGACAAACA 1477
|||||||||||||||||||||||||||.|||||.||||||||.|||||.||.||.||.||||||||||||||||
Sbjct 2514 CTCCCCAAGGAAAAAGCCTCGAAAGCAGCAGCACGTGATCTCGACAGAGGAGGGGGATATGATGGAGACAAACA 2587
Query 1478 GCACTGATGATGAGAAGTCCACTGCCAAGAGTCTTCTGGTGAAGGCTGAGAAGCGCAAGTCTCCTCCCAAGGAG 1551
|||||||.||||||||||||.|||||||||||||.|||||.|||||||||||||||||||||||||||||.|||
Sbjct 2588 GCACTGACGATGAGAAGTCCGCTGCCAAGAGTCTCCTGGTAAAGGCTGAGAAGCGCAAGTCTCCTCCCAAAGAG 2661
Query 1552 TATATTGATGAGGAAGGTGTGAGATATGTCCCAGTGCGTCCAAGACCCCCCATTACTTTGCTTCGTCACTATCG 1625
||.||||||||||||||||||||.||||||||||||||.||.|||||.||||||||||||||.|||||||||||
Sbjct 2662 TACATTGATGAGGAAGGTGTGAGGTATGTCCCAGTGCGACCCAGACCTCCCATTACTTTGCTACGTCACTATCG 2735
Query 1626 GAACCCCTGGAAAGCTGCTTACCACCACTTTCAGAGGTACAGTGACGTCCGGGTCAAAGAGGAGAAGAAAGCTA 1699
|||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2736 GAACCCCTGGAAAGCTGCTTATCACCACTTTCAGAGGTACAGTGACGTCCGGGTCAAAGAGGAGAAGAAAGCTA 2809
Query 1700 TGCTGCAGGAAATAGCTAATCAGAAAGGAGTATCCTGTCGTGCTCAAGGCTGGAAAGTCCACCTCTGTGCTGCC 1773
||||.||||||||||||||||||||||||||.|||||.|||||.||.|||||||||||.|||||||||||||||
Sbjct 2810 TGCTACAGGAAATAGCTAATCAGAAAGGAGTGTCCTGCCGTGCCCAGGGCTGGAAAGTTCACCTCTGTGCTGCC 2883
Query 1774 CAGTTACTACAGCTGACGAATCTAGAACATGATGTCTATGAAAGACTTACTAACCTGCAGGAAGGGATTATCCC 1847
|||||||||||||||||.|||||||||||.||.||.|||||||||||.||.|||||.|||||||||||||||||
Sbjct 2884 CAGTTACTACAGCTGACAAATCTAGAACACGACGTTTATGAAAGACTCACCAACCTACAGGAAGGGATTATCCC 2957
Query 1848 AAAGAAAAAAGCAGCAACAGATGATGATCTCCACCGAATAAACGAACTGATACAGGGAAATATGCAGAGGTGTA 1921
|||||||||.|||||.||.|||||.|||||.||.||||||||.||.||||||||||||||.||||||.||||||
Sbjct 2958 AAAGAAAAAGGCAGCGACTGATGACGATCTACATCGAATAAATGAGCTGATACAGGGAAACATGCAGCGGTGTA 3031
Query 1922 AACTTGTGATGGATCAAATCAGTGAAGCCAGAGACTCCATGCTTAAGGTTTTAGATCATAAAGACCGTGTCCTG 1995
||||.||||||||.|||||||||||.|||||||||||.||||||||||||.|.|||||.||.|||||.||.|||
Sbjct 3032 AACTAGTGATGGACCAAATCAGTGAGGCCAGAGACTCTATGCTTAAGGTTCTGGATCACAAGGACCGGGTGCTG 3105
Query 1996 AAGCTGCTTAACAAGAACGGGACTGTCAAAAAAGTGTCCAAATTGAAGCGAAAGGAAAAAGTC 2058
||||||||.||||||||||||||.|||||.||.|||||.||.||||||||.|||||.||.||.
Sbjct 3106 AAGCTGCTCAACAAGAACGGGACGGTCAAGAAGGTGTCAAAGTTGAAGCGGAAGGAGAAGGTG 3168
