Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12581
- Subject:
- XR_001745596.2
- Aligned Length:
- 5298
- Identities:
- 1539
- Gaps:
- 3753
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGCCAGGCTCGCAAGCACCGCGTAGGCCAGCTGGCCGGATCCCGCCGTCTGTCATGGCGGCCCCCATCCTGAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GATGTAGTGGCCTATGTTGAAGTGTGGTCATCCAATGGAACAGAAAATTATTCAAAGACATTTACAACACAGCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGTGGATATGGGGGCAAAGGTTTCAAAAACTTTTAACAAACAAGTAACTCACGTTATCTTCAAAGATGGCTACC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGAGCACTTGGGACAAAGCTCAGAAGAGAGGCGTAAAGCTCGTTTCGGTGCTCTGGGTGGAAAAATGCAGGACA 296
Query 1 ------------------------------------------ATGAATGAACACTTATCAAGCCTAATTAAAAA 32
||||||||||||||||||||||||||||||||
Sbjct 297 GCTGGAGCACACATTGATGAATCATTGTTCCCTGCAGCTAATATGAATGAACACTTATCAAGCCTAATTAAAAA 370
Query 33 AAAACGTAAATGTATGCAGCCCAAGGATTTTAATTTTAAAACACCAGAAAATGATAAGAGATTTCAGAAGAAAT 106
||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AAAACGTAAATGTATGCAGCCCAAAGATTTTAATTTTAAAACACCAGAAAATGATAAGAGATTTCAGAAGAAAT 444
Query 107 TTGAGAAAATGGCTAAAGAGCTACAAAGGCAAAAAACAAATCTAGATGATGATGTACCTATTCTCTTATTTGAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TTGAGAAAATGGCTAAAGAGCTACAAAGGCAAAAAACAAATCTAGATGATGATGTACCTATTCTCTTATTTGAA 518
Query 181 TCTAATGGTTCATTAATATATACTCCCACAATTGAAATTAATAGTAGTCACCACAGCGCAATGGAGAAGAGATT 254
|||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 519 TCTAATGGTTCATTAATATATACTCCCACAATTGAAATTAATAGTAGGCACCACAGCGCAATGGAGAAGAGATT 592
Query 255 ACAAGAGATGAAGGAGAAAAGGGAAAATCTTTCCCCCACCTCTTCCCAAATGATTCAGCAGTCTCATGATAATC 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ACAAGAGATGAAGGAGAAAAGGGAAAATCTTTCCCCCACCTCTTCCCAAATGATTCAGCAGTCTCATGATAATC 666
Query 329 CAAGTAACTCTCTGTGTGAAGCACCTTTGAACATTTCACGTGATACTTTGTGTTCAGATGAATACTTTGCTGGT 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CAAGTAACTCTCTGTGTGAAGCACCTTTGAACATTTCACGTGATACTTTGTGTTCAGATGAATACTTTGCTGGT 740
Query 403 GGCTTACACTCATCTTTTGATGATCTTTGTGGAAACTCAGGATGTGGAAATCAGGAAAGGAAGTTGGAAGGATC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GGCTTACACTCATCTTTTGATGATCTTTGTGGAAACTCAGGATGTGGAAATCAGGAAAGGAAGTTGGAAGGATC 814
Query 477 CATTAATGACATTAAAAGTGATGTGTGTATTTCTTCACTTGTATTGAAAGCAAATAATATTCATTCATCACCAT 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CATTAATGACATTAAAAGTGATGTGTGTATTTCTTCACTTGTATTGAAAGCAAATAATATTCATTCATCACCAT 888
Query 551 CTTTCACTCACCTCGATAAATCAAGTCCTCAGAAATTTCTGAGTAATCTTTCAAAGGAAGAAATAAACTTGCAA 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTTTCACTCACCTCGATAAATCAAGTCCTCAGAAATTTCTGAGTAATCTTTCAAAGGAAGAAATAAACTTGCAA 962
Query 625 AGAAATATTGCAGGTAAAGTAGTCACCCCTCACCAAAAGCAGGCTGCAGGTATGTCTCAGGAGACGTTTGAAGA 698
||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGAAATATTGCAGGTAAAGTAGTCACCCCTGACCAAAAGCAGGCTGCAGGTATGTCTCAGGAGACGTTTGAAGA 1036
Query 699 GAAGTATCGTTTGTCTCCTACCTTATCTTCAACAAAAGGCCACCTTTTGATACATTCAAGACCCAGGAGTTCCT 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GAAGTATCGTTTGTCTCCTACCTTATCTTCAACAAAAGGCCACCTTTTGATACATTCAAGACCCAGGAGTTCCT 1110
Query 773 CAGTAAAGAGAAAAAGAGTATCACATGGCTCCCATTCACCTCCGAAGGAAAAATGCAAGAGAAAGAGGAGCACC 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CAGTAAAGAGAAAAAGAGTATCACATGGCTCCCATTCACCTCCGAAGGAAAAATGCAAGAGAAAGAGGAGCACC 1184
Query 847 AGGAGATCTATCATGCCGAGGCTGCAGCTGTGCAGGTCGGAAGGCAGGCTGCAGCACGTGGCGGGACCTGCCCT 920
|||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1185 AGGAGATCTATCATGCCGAGGCTGCAGCTGTGCAGGTCGGAAGACAGGCTGCAGCACGTGGCGGGACCTGCCCT 1258
Query 921 GGAGGCTCTTAGCTGTGGGGAGTCTTCATATGATGACTATTTTTCACCTGATAATCTTAAGGAAAGGTATTCAG 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GGAGGCTCTTAGCTGTGGGGAGTCTTCATATGATGACTATTTTTCACCTGATAATCTTAAGGAAAGGTATTCAG 1332
Query 995 AGAATCTTCCTCCTGAATCTCAGCTGCCATCAAGCCCTGCTCAGTTGAGCTGCAGAAGTCTTTCTAAGAAGGAG 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AGAATCTTCCTCCTGAATCTCAGCTGCCATCAAGCCCTGCTCAGTTGAGCTGCAGAAGTCTTTCTAAGAAGGAG 1406
Query 1069 AGAACAAGCATATTTGAAATGTCTGATTTTTCCTGCGTTGGCAAAAAAACCAGAACAGTTGACATTACCAATTT 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AGAACAAGCATATTTGAAATGTCTGATTTTTCCTGCGTTGGCAAAAAAACCAGAACAGTTGACATTACCAATTT 1480
Query 1143 CACAGCAAAAACCATCTCCAGTCCTCGGAAAACTGGAAATGGTGAAGGCCGTGCAACTTCGAGTTGCGTGACTT 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CACAGCAAAAACCATCTCCAGTCCTCGGAAAACTGGAAATGGTGAAGGCCGTGCAACTTCGAGTTGCGTGACTT 1554
Query 1217 CTGCCCCTGAAGAAGCCCTAAGGTGTTGTAGACAGGCTGGGAAAGAAGACGCATGCCCAGAGGGAAATGGCTTT 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CTGCCCCTGAAGAAGCCCTAAGGTGTTGTAGACAGGCTGGGAAAGAAGACGCATGCCCAGAGGGAAATGGCTTT 1628
Query 1291 TCTTACACCATTGAGGACCCTGCTCTTCCAAAAGGACATGATGATGATTTAACTCCTTTGGAAGGAAGCCTTGA 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TCTTACACCATTGAGGACCCTGCTCTTCCAAAAGGACATGATGATGATTTAACTCCTTTGGAAGGAAGCCTTGA 1702
Query 1365 AGAAATGAAAGAAGCGGTTGGTCTGAAAAGCACACAGAACAAAGGTACCACTTCCAAAATATCAAACTCCTCTG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AGAAATGAAAGAAGCGGTTGGTCTGAAAAGCACACAGAACAAAGGTACCACTTCCAAAATATCAAACTCCTCTG 1776
Query 1439 AAGGCGAAGCCCAGAGTGAACATGAGCCATGTTTTATAGTTGACTGTAACATGGAGACGTCTACAGAAGAGAAG 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AAGGCGAAGCCCAGAGTGAACATGAGCCATGTTTTATAGTTGACTGTAACATGGAGACGTCTACAGAAGAGAAG 1850
Query 1513 GAAAACTTACCCGGAGGATACAGTGGAAGTATG----------------------------------------- 1545
||||||||||||||||||||||||||||||.|.
Sbjct 1851 GAAAACTTACCCGGAGGATACAGTGGAAGTGTTAAAAATAGACCAACAAGGCATGATGTTTTAGATGACTCATG 1924
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 1925 TGACGGCTTTAAGGACCTCATCAAACCTCATGAGGAATTGAAGAAAAGTGGGAGAGGCAAAAAGCCAACAAGAA 1998
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 1999 CATTAGTCATGACAAGCATGCCATCTGAAAAGCAGAATGTCGTCATCCAGGTTGTGGATAAATTGAAAGGCTTT 2072
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 2073 TCAATTGCACCAGACGTCTGTGAGACCACGACTCACGTGCTTTCCGGGAAGCCACTTCGCACCCTGAATGTGCT 2146
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 2147 GCTGGGAATTGCGCGTGGCTGCTGGGTTCTCTCTTATGATTGGGTGCTATGGTCTTTAGAATTGGGTCACTGGA 2220
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 2221 TTTCTGAGGAGCCGTTCGAACTGTCTCACCACTTCCCTGCAGCTCCCCTGTGCCGAAGCGAGTGCCACTTGTCT 2294
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 2295 GCAGGGCCGTACCGCGGAACCCTCTTTGCCGACCAGCCAGCGATGTTTGTCTCGCCTGCCAGCAGCCCCCCAGT 2368
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 2369 GGCCAAGCTCTGTGAACTAGTCCACCTGTGCGGAGGCCGGGTCAGCCAAGTCCCCCGCCAGGCCAGCATCGTCA 2442
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 2443 TCGGGCCCTACAGCGGAAAGAAGAAAGCCACAGTCAAGTATCTGTCTGAGAAATGGGTCTTAGACTGGCAAGCT 2516
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 2517 TCCCACCCTGCCCACTGAGTGTCCTGACACAACGGGAACGTGCCCTGCATCTAATGGGACATGTGGCTACCAAG 2590
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 2591 CACTTGAACTGGCCAGTGTGACTGAGAACTGAATGTTTCATTGTATTGAATTTCGTTTCACGTTAATTTAAAAA 2664
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 2665 GATTCCATCACCCAGCACAAGGTCTGTGCCCCTGAAAACTACCTATTGTCACAATGACAGTGACCTCACTGGCC 2738
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 2739 TGTGGTGACTGCACACAGCTCGCAAAACTGTCTTTGGATGTTCAAATGAGAAACAAAACTGTGAAGAGAAGGAA 2812
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 2813 CTGGCGTATACAAGATGACTTCTGATATCATGTTTGCCATGTGTTGTGGTTCTTAAGAACTCATAGGTGACTTT 2886
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 2887 CTGATGACTGAATGTCTGTTTCAGAGACGCTTCGGGCCTTTTTATTTTTATTTTATTTTTTATTTTTTGAGACG 2960
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 2961 GAGTCCTGCCCTGTTTCCCAGGCTGGAGTGCAATGGCACAATCTCGGCTCACTGCAACCTCCACCTCCCAGGTT 3034
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 3035 CAAGCGATTCTGCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGATGTGTGCCACCATGCCTGGCTAATTTTT 3108
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 3109 GTAGTTTTAGTAGAGACAGGGTTTCGCCATGTTGGCCAGGCTGGTCTCAAACGCCTGAGCTCAGGTGATCTGTC 3182
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 3183 AGGCCTCTTCTATAGAATTCCAGTCTTTGTGTCTTAGTCATGATCATAATTGAAAGGTCACAGAACCTTTGTCA 3256
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 3257 TTAGAGCACAGTACTGCCAAATAAAGAATGGAAATTCAATGACATTGTTTTATTACTGAGAACAACTAGAGAAC 3330
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 3331 TCTGCAAGTTTCTTGGCTTAGACTCGATCTTTATTAATACATTATCTATTAGGTAGGAAAGACATTTGTCAGCT 3404
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 3405 ATTAAGGTGACTTTTATCTAGCGGAGATTCCTCTCTTAAAGTAATGAAAGGAGATAGGTATGGGGGGTGTTATA 3478
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 3479 CAGGATAATTGGTGACATCTGAGTGTCTTACTTCTGCAAGCCTGCTTTATGGTGAGCAAAGCATCACCAGCAAG 3552
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 3553 TGATCACAATGTCCACTGGCCGCTTTTTGCCTGCCGTCCTCGAGATGAAATTGGCAGTTGGGGCTGATTCACAG 3626
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 3627 AAACACCGATTTGTGGCTGAGCACGGTGGCTCACACCTGTCATCCCAGCCCTTTGGGAGGCTGAGGTGGACAGA 3700
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 3701 TCACTTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACGCAGCAAAACCCATCTCTACTAAAAATACAAAAATC 3774
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 3775 AGCTGGGTGTGGTGGCACACACCTGTGGTCCCAGCTCCTCAGGAGTCTGAGGCAGAAGAATCGCTTGAACCCAA 3848
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 3849 GAGGCAGAGGTTGCAGTGAGCCAAGGTTGCAGTGAATCAAGATTGCTCCACTGCACTCCAGCCTGGGCAACAGA 3922
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 3923 GTAACTCTCCTTCTCAAATAAATAAATAAATAAATAAGAAACACTGATGTGTCTGTCACCTTCTAAAGAAATGA 3996
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 3997 AATGCTAGGAAGTCCTAGCCAGAGTGATCAGGCAAGAATAAGCCATAAAAGGCATCCAAATAGGAAAAGAAGTC 4070
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 4071 AAACTGTCTCTCTTCACTGCCGATATGATTCTATACCTAGAAAACCCTAAAGACTCTGCCAAAAGGCTCCTGGA 4144
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 4145 ACCGATAAATGACTTAAGTAAAGTTTCAGGATAGTAAATCCATGTACAAAAATCAGCATTTCCAAACACAGTAA 4218
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 4219 CATTCAAGCTGAGCACCAAATCAAGAACGCAATCCCATTTCCAATAGCCACGGAATGAAATACCTAGGAACACG 4292
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 4293 TATAACCAAGGAGGCAAAGGATCTCTACAAGGAGAACCATAAACGAGATGCTGAGTCCCAGCGAGGTCGGAGGT 4366
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 4367 GCCACTGAGCCCTCATCGTGGTGCCGTTCCCGCTCTGGGTTATTTATCTGTTGCTCATCTCAGCTGTTGTTCCT 4440
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 4441 ACCTCAAATTTCAAGTCCCTCAACAAATATAACAGAACCACTTCTAGAATGAACCTTTGAGAAGGGAGGTAGCA 4514
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 4515 GTGCATTGTATAGGAATTGGCATTCTATAGAAAACCACAGAAACTGGAAATAATGAAGGGTTGTCTCTTGGTTT 4588
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 4589 TAAAATAATGTATACACCTAAATCATCCCCTTATGATACTCATCCTCTAACAGCAATTGAACTTCAATACAATG 4662
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 4663 AGTCATTCCTGAGTTCACTCGCTTCACATTACATATGTTTCTCTATAACCACAAGCATCCTGGCTTGGTAGTGC 4736
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 4737 TCCCACAGCACCAAAAATCCCTGAGGAGGCTGACAAACATTGTGCTGACTCATGCTGGAGACAAGCCACAGAGA 4810
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 4811 ACTTCCATCCCCCACCACATCAGCCACGGAGCCAGCCCAGCCTCTGCCCACCCAGGCCTCAGTCCCCAGTGTTA 4884
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 4885 AGTTCTGATCCCTGATGCTGGCCTGCCAGTGGCCAGTCAAGATTCTCTTTCTGAAAGCTAGTATTTTATGAGGA 4958
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 4959 CTGACTGTTGCTAGACATTACACTAAGCACATTATATGTTGTACTTCATTTTACCCTTTCAACAATCCTATTAG 5032
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 5033 TAGCTTACTGTGGGTCTGCAAAGCCTTACTCAAAACATATAGGGCTAGAGGTTCTCAGGATTCTGAATTTTAAA 5106
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 5107 AAAAATTTGTAAAGGCTTATGGCTCTCACCACTGTTATTCAACGTTGCATTAAAGTTTCTACCCAGAGAAGGCA 5180
Query 1546 -------------------------------------------------------------------------- 1545
Sbjct 5181 ATAAAAGGAAATTAAAGCTATACAGATTGGAAGTGAAGAAATAAAAGTCTTTATTCTCAAGAATACAAGACACT 5254
Query 1546 -------------------------------------------- 1545
Sbjct 5255 ATGTATAGAAATTGTAAGGAATGCAAAAAAAAAAAAAAAAAAAA 5298
