Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12583
- Subject:
- NM_001167680.1
- Aligned Length:
- 2485
- Identities:
- 1645
- Gaps:
- 632
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCCTCAGCTGACAAGAATGGCAGCAACCTCCCATCTGTGTCTGGTAGCCGCCTGCAGAGCCGGAAGCCACC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAACCTCTCCATCACCATCCCGCCACCAGAGAGCCAGGCCCCCGGCGAGCAGGATAGCATGCTTCCTGAGAGGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCAAGAACCCAGCCTACCTGAAGAGTGTCAGCCTACAGGAGCCCCGGGGACGATGGCAGGAGGGCGCAGAGAAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGCCCCGGCTTCCGCCGCCAGGCCTCCCTGTCCCAGAGCATCCGCAAGAGCACAGCCCAGTGGTTTGGGGTCAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CGGCGACTGGGAGGGCAAGCGACAAAACTGGCATCGTCGCAGCCTGCACCACTGCAGCGTGCACTATGGCCGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCAAGGCCTCGTGCCAGAGAGAACTGGAGCTGCCCAGCCAGGAGGTGCCATCCTTCCAGGGCACTGAGTCTCCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAACCGTGCAAGATGCCCAAGATTGTGGATCCACTGGCTCGGGGTAGGGCCTTCCGCCATCCAGATGAGGTGGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCGGCCTCACGCTGCCCACCCACCTCTGACTCCAGGGGTCCTGTCTCTCACATCCTTCACCAGTGTCCGCTCTG 592
Query 1 -----------------------------ATGTCTGTGGCCCACATGAGCTTGCAAGCTGCCGCTGCCCTCCTC 45
||.|||||.|||||.||||||||.||.||.|||||.|||||||||
Sbjct 593 GCTACTCCCATCTGCCCCGCCGCAAGAGGATATCTGTTGCCCATATGAGCTTTCAGGCAGCCGCCGCCCTCCTC 666
Query 46 AAGGGGCGCTCGGTGCTGGATGCCACCGGACAGCGGTGCCGGGTGGTCAAGCGCAGCTTTGCCTTCCCGAGCTT 119
||||||||.||.|||||.|||||.||.||.||||||||||||...|||||.||||||||.||.|.|||.|||||
Sbjct 667 AAGGGGCGTTCCGTGCTAGATGCGACTGGGCAGCGGTGCCGGCATGTCAAACGCAGCTTCGCTTACCCCAGCTT 740
Query 120 CCTGGAGGAGGATGTGGTCGATGGGGCAGACACGTTTGACTCCTCCTTTTTTAGTAAGGAAGAAATGAGCTCCA 193
||||||||||||||..||||||||.||.|||||.||.|||||||||||||||||||||||||||||||||||||
Sbjct 741 CCTGGAGGAGGATGCTGTCGATGGAGCTGACACCTTCGACTCCTCCTTTTTTAGTAAGGAAGAAATGAGCTCCA 814
Query 194 TGCCTGATGATGTCTTTGAGTCCCCCCCACTCTCTGCCAGCTACTTCCGAGGGATCCCACACTCAGCCTCCCCT 267
|||||||.||||||||||||||||||||||||||||||||||||||||||||..||||||||||.||||||||.
Sbjct 815 TGCCTGACGATGTCTTTGAGTCCCCCCCACTCTCTGCCAGCTACTTCCGAGGTGTCCCACACTCTGCCTCCCCG 888
Query 268 GTCTCCCCCGATGGGGTGCAAATCCCTCTGAAGGAGTA------TGGCCGAGCCCCAGTCCCCGGGCCCCGGCG 335
||||||||.|||||.|||||.|||||.||.||.||.|| |||||||||||..|..||||||.|||.|||
Sbjct 889 GTCTCCCCGGATGGAGTGCACATCCCGCTAAAAGAATACAGCGGTGGCCGAGCCCTGGGTCCCGGGACCCAGCG 962
Query 336 CGGCAAGCGCATCGCCTCCAAGGTGAAGCACTTTGCCTTTGATCGGAAGAAGCGGCACTACGGCCTCGGCGTGG 409
.|||||.|||||.||||||||.||.|||||||||||.|||||.|||||||||.|||||||||||||.|||||.|
Sbjct 963 TGGCAAACGCATTGCCTCCAAAGTAAAGCACTTTGCATTTGACCGGAAGAAGAGGCACTACGGCCTGGGCGTCG 1036
Query 410 TGGGCAACTGGCTGAACCGCAGCTACCGCCGCAGCATCAGCAGCACTGTGCAGCGGCAGCTGGAGAGCTTCGAC 483
||||.||||||||.|||||.|||||.||.|||||||||||||||||.||||||||||||||||||||||||||.
Sbjct 1037 TGGGTAACTGGCTCAACCGAAGCTATCGACGCAGCATCAGCAGCACCGTGCAGCGGCAGCTGGAGAGCTTCGAT 1110
Query 484 AGCCACCGGCCCTACTTCACCTACTGGCTGACCTTCGTCCATGTCATCATCACGCTGCTGGTGATTTGCACGTA 557
||||||||||||||||||||||||||||||||.|||||.||..||||||||||..||||||||||.|||||.||
Sbjct 1111 AGCCACCGGCCCTACTTCACCTACTGGCTGACGTTCGTTCACATCATCATCACCTTGCTGGTGATCTGCACCTA 1184
Query 558 TGGCATCGCACCCGTGGGCTTTGCCCAGCACGTCACCACCCAGCTGGTGCTGCGGAACAAAGGTGTGTACGAGA 631
||||||||||||.||||||||||||||||||||.||||||||||||||||||..|||||.|||.|||||.||||
Sbjct 1185 TGGCATCGCACCTGTGGGCTTTGCCCAGCACGTTACCACCCAGCTGGTGCTGAAGAACAGAGGCGTGTATGAGA 1258
Query 632 GCGTGAAGTACATCCAGCAGGAGAACTTCTGGGTTGGCCCCAGCTCGATTGACCTGATCCACCTGGGGGCCAAG 705
||||||||||||||||||||||||||||||||.||||||||||||||||||||||.||.||||||||.||.|||
Sbjct 1259 GCGTGAAGTACATCCAGCAGGAGAACTTCTGGATTGGCCCCAGCTCGATTGACCTCATTCACCTGGGAGCAAAG 1332
Query 706 TTCTCACCCTGCATCCGGAAGGACGGGCAGATCGAGCAGCTGGTGCTGCGCGAGCGAGACCTGGAGCGGGACTC 779
|||||.||||||||||||||||||..|||.||.|||||||||||.|.|.|.|||||.|||.|.|||||...|||
Sbjct 1333 TTCTCGCCCTGCATCCGGAAGGACCAGCAAATTGAGCAGCTGGTACGGAGGGAGCGCGACATTGAGCGCACCTC 1406
Query 780 AGGCTGCTGTGTCCAGAATGACCACTCCGGATGCATCCAGACCCAGCGGAAGGACTGCTCGGAGACTTTGGCCA 853
.||||||||||||||||||||||.|||.||.|||||||||||||.|..|||||||||||||||||||||.||||
Sbjct 1407 TGGCTGCTGTGTCCAGAATGACCGCTCGGGCTGCATCCAGACCCTGAAGAAGGACTGCTCGGAGACTTTAGCCA 1480
Query 854 CTTTTGTCAAGTGGCAGGATGACACTGGGCCCCCCATGGACAAGTCTGATCTGGGCCAGAAGCGGACTTCGGGG 927
|.||.||.|||||||||.||||.|||||||||.| .|||||||||||.|||.|||||||||.|.|.||||.|
Sbjct 1481 CGTTCGTAAAGTGGCAGAATGATACTGGGCCCTC---AGACAAGTCTGACCTGAGCCAGAAGCAGCCATCGGCG 1551
Query 928 GCTGTCTGCCACCAGGACCCCAGGACCTGCGAGGAGCCAGCCTCCAGCGGTGCCCACATCTGGCCCGATGACAT 1001
|.|||.||||||||.||||||||||||||.||.|||||.||||||||.||.||||||||||||||.||||||||
Sbjct 1552 GTTGTGTGCCACCAAGACCCCAGGACCTGTGAAGAGCCTGCCTCCAGTGGGGCCCACATCTGGCCTGATGACAT 1625
Query 1002 CACTAAGTGGCCGATCTGCACAGAGCAGGC-CAGGAGCAACCACACAGGCTTCCTGCACATGGACTGCGAGATC 1074
.||.|||||||||||||||||||||||||| || ||||||||||||.|||||..|||||||.|||||..|||||
Sbjct 1626 TACCAAGTGGCCGATCTGCACAGAGCAGGCTCA-GAGCAACCACACGGGCTTGTTGCACATAGACTGTAAGATC 1698
Query 1075 AAGGGCCGCCCCTGCTGCATCGGCACCAAGGGCAGCTGTGAGATCACCACCCGGGAATACTGTGAGTTCATGCA 1148
||.|||||||||||||||||||||||||||||||||||.|||||||||||.|||||.|||||||||||||||||
Sbjct 1699 AAAGGCCGCCCCTGCTGCATCGGCACCAAGGGCAGCTGCGAGATCACCACTCGGGAGTACTGTGAGTTCATGCA 1772
Query 1149 CGGCTATTTCCATGAGGAAGCAACACTCTGCTCCCAGGTGCACTGCTTGGACAAGGTGTGTGGGCTGCTGCCCT 1222
.||||||||||||||.||.||.||.||.||.||||||||||||||.||.|||||||||||||||||.|||||.|
Sbjct 1773 TGGCTATTTCCATGAAGACGCGACGCTGTGTTCCCAGGTGCACTGTTTAGACAAGGTGTGTGGGCTCCTGCCTT 1846
Query 1223 TCCTCAACCCTGAGGTCCCAGATCAGTTCTACAGGCTCTGGCTGTCTCTCTTCCTACATGCTGGCGTGGTGCAC 1296
|||||||||||||||||||.||.|||||||||.||.|||||||||||.|.|||||.|||||||||.|.||||||
Sbjct 1847 TCCTCAACCCTGAGGTCCCTGACCAGTTCTACCGGATCTGGCTGTCTTTATTCCTGCATGCTGGCATAGTGCAC 1920
Query 1297 TGCCTCGTGTCTGTGGTCTTTCAAATGACCATCCTGAGGGACCTGGAGAAGCTGGCCGGCTGGCACCGTATCGC 1370
|||||.||||||||||||||.|||||||||||||||||||||||.|||||||||||||||||||||||.|||.|
Sbjct 1921 TGCCTTGTGTCTGTGGTCTTCCAAATGACCATCCTGAGGGACCTAGAGAAGCTGGCCGGCTGGCACCGCATCTC 1994
Query 1371 CATCATCTTCATCCTCAGTGGCATCACAGGCAACCTCGCCAGTGCCATCTTTCTCCCATACCGGGCAGAGGTGG 1444
|||||||||||||||.||||||||.|||||||||||.|||||.||||||||.|||||.||||||||||||||||
Sbjct 1995 CATCATCTTCATCCTTAGTGGCATTACAGGCAACCTGGCCAGCGCCATCTTCCTCCCCTACCGGGCAGAGGTGG 2068
Query 1445 GCCCGGCCGGCTCACAGTTCGGCCTCCTCGCCTGCCTCTTCGTGGAGCTCTTCCAGAGCTGGCCGCTGCTGGAG 1518
||||.|||||.||.|||||||||||||||||||||||||||||||||||.|||||||||||||.||||.|||||
Sbjct 2069 GCCCAGCCGGGTCGCAGTTCGGCCTCCTCGCCTGCCTCTTCGTGGAGCTGTTCCAGAGCTGGCAGCTGTTGGAG 2142
Query 1519 AGGCCCTGGAAGGCCTTCCTCAACCTCTCGGCCATCGTGCTCTTCCTGTTCATCTGTGGCCTCCTGCCCTGGAT 1592
.||||.||||||||||||.|||||||.||||||||.|||||.|||||.||||||||||||||||||||||||||
Sbjct 2143 CGGCCGTGGAAGGCCTTCTTCAACCTGTCGGCCATTGTGCTTTTCCTCTTCATCTGTGGCCTCCTGCCCTGGAT 2216
Query 1593 CGACAACATCGCCCACATCTTCGGCTTCCTCAGTGGCCTGCTGCTGGCCTTCGCCTTCCTGCCCTACATCACCT 1666
.|||||||||||||||||||||||.||||||||.|||.||||.||||||||||||||||||||.|||||.||||
Sbjct 2217 AGACAACATCGCCCACATCTTCGGGTTCCTCAGCGGCATGCTTCTGGCCTTCGCCTTCCTGCCTTACATTACCT 2290
Query 1667 TCGGCACCAGCGACAAGTACCGCAAGCGGGCACTCATCCTGGTGTCACTGCTGGCCTTTGCCGGCCTCTTCGCC 1740
||||||||||||||||||||||||||||.||.||||||||.|||||.|||||||.||||||.||.|||||.||.
Sbjct 2291 TCGGCACCAGCGACAAGTACCGCAAGCGAGCCCTCATCCTCGTGTCGCTGCTGGTCTTTGCTGGGCTCTTTGCT 2364
Query 1741 GCCCTCGTGCTGTGGCTGTACATCTACCCCATTAACTGGCCCTGGATCGAGCACCTCACCTGCTTCCCCTTCAC 1814
.||||.||||||||||||||||||||||||||.||||||||||||||||||.|||||||||||||.||||||||
Sbjct 2365 TCCCTGGTGCTGTGGCTGTACATCTACCCCATCAACTGGCCCTGGATCGAGTACCTCACCTGCTTTCCCTTCAC 2438
Query 1815 CAGCCGCTTCTGCGAGAAGTATGAGCTGGACCAGGTGCTGCAC 1857
||||||||||||.||||||||.|||||.|||||||||||.|||
Sbjct 2439 CAGCCGCTTCTGTGAGAAGTACGAGCTAGACCAGGTGCTACAC 2481
