Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- NM_001363570.1
- Aligned Length:
- 3580
- Identities:
- 182
- Gaps:
- 3371
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAGGAGGGACGAGCGAGACGCCAAAGCCATGCGGTCCCTGCAGCCGCCGGATGGGGCCGGCTCGCCCCCCGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAGTCTGAGGAACGGCTACGTGAAGAGCTGCGTGAGCCCCTTGCGGCAGGACCCTCCGCGCGGCTTCTTCTTCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACCTCTGCCGCTTCTGCAACGTGGAGCTGCGGCCGCCGCCGGCCTCTCCCCAGCAGCCGCGGCGCTGCTCCCCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTCTGCCGGGCGCGCCTCTCGCTGGGCGCCCTGGCTGCCTTTGTCCTCGCCCTGCTGCTGGGCGCGGAACCCGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAGCTGGGCTGCCGGGGCCGCCTGGCTGCGGACGCTGCTGAGCGTGTGTTCGCACAGCTTGAGCCCCCTCTTCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCATCGCCTGTGCCTTCTTCTTCCTCACCTGCTTCCTCACCCGGACCAAGCGGGGACCCGGCCCGGGCCGGAGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGCGGCTCCTGGTGGCTGCTGGCGCTGCCCGCCTGCTGTTACCTGGGGGACTTCTTGGTGTGGCAGTGGTGGTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TTGGCCTTGGGGGGATGGCGACGCAGGGTCCGCGGCCCCGCACACGCCCCCGGAGGCGGCAGCGGGCAGGTTGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGCTGGTGCTGAGCTGCGTAGGGCTGCTGCTGACGCTCGCGCACCCGCTGCGGCTCCGGCACTGCGTTCTGGTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTGCTCCTGGCCAGCTTCGTCTGGTGGGTCTCCTTCACCAGCCTCGGGTCGCTGCCCTCCGCCCTCAGGCCGCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCTCTCCGGCCTGGTGGGGGGCGCTGGCTGCCTGCTGGCCCTGGGGTTGGATCACTTCTTTCAAATCAGGGAAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CGCCTCTTCATCCTCGACTGTCCAGTGCCGCCGAAGAAAAAGTGCCTGTGATCCGACCCCGGAGGAGGTCCAGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TGCGTGTCGTTAGGAGAAACTGCAGCCAGTTACTATGGCAGTTGCAAAATATTCAGGAGACCGTCGTTGCCTTG 962
Query 1 ---------------------------------------------ATGG----AGTCTCATTCTGTCGCCCAGA 25
|||| ||.||||||.| ||..
Sbjct 963 TATTTCCAGAGAACAGATGATTCTTTGGGATTGGGACTTAAAACAATGGTATAAGCCTCATTAT------CAAG 1030
Query 26 CTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGC 99
||||||||.|||||||||||||||||||||.||||||||...|||.|..|.||||||||||||||||||||.||
Sbjct 1031 CTGGAGTGCAGTGGCATGATCTCGGCTCACCGCAACCTCCAGCTCCCTGGTTCAAGCGATTCTCCTGCCTCAGC 1104
Query 100 CTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGG 173
||||||||||||||||||||||||||...||.||||..||.|||||| |||||||||||||||||||||||
Sbjct 1105 CTCCGGAGTAGCTGGGATTACAGGCATGTGCCACCACACCTGGCTAA----TTTTGTATTTTTAGTAGAGATGG 1174
Query 174 GGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG---------------------------- 219
|.||||.|||||||||.|||||||||||.|||||||.|||||||.|
Sbjct 1175 GATTTCTCCATGTTGGTCAGGCTGGTCTTGAACTCCCGACCTCAGGTGATCTGCCCACCTCGGCCTCCCAAAGT 1248
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1249 GCTGGGATTACAGGGAATTCTGGAGGTGGAAATGGAGTTGATCTTTCAGTGCTAAATGAGGCTCGCAATATGGT 1322
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1323 GTCAGATCTTCTGACTGATCCAAGCCTTCCACCACAAGTCATTTCCTCTCTACGGAGTATTAGTAGCTTAATGG 1396
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1397 GTGCTTTCTCAGGTTCCTGTAGGCCAAAGATTAATCCTCTCACACCATTTCCTGGATTTTACCCCTGTTCTGAA 1470
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1471 ATAGAGGACCCAGCTGAGAAAGGGGATAGAAAACTTAACAAGGGACTAAATAGGAATAGTTTGCCAACTCCACA 1544
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1545 GCTGAGGAGAAGCTCAGGAACTTCAGGATTGCTACCTGTTGAACAGTCTTCAAGGTGGGATCGTAATAATGGCA 1618
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1619 AAAGACCTCACCAAGAATTTGGCATTTCAAGTCAAGGATGCTATCTAAATGGGCCTTTTAATTCAAATCTACTG 1692
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1693 ACTATCCCGAAGCAAAGGTCATCTTCTGTATCACTGACTCACCATGTAGGTCTCAGAAGAGCTGGTGTTTTGTC 1766
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1767 CAGTCTGAGTCCTGTGAATTCTTCCAACCATGGACCAGTGTCTACTGGCTCTCTAACTAATCGATCACCCATAG 1840
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1841 AATTTCCTGATACTGCTGATTTTCTTAATAAGCCAAGCGTTATCTTGCAGAGATCTCTGGGCAATGCACCTAAT 1914
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1915 ACTCCAGATTTTTATCAGCAACTTAGAAATTCTGATAGCAATCTGTGTAACAGCTGTGGACATCAAATGCTGAA 1988
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1989 ATATGTTTCAACATCTGAATCAGATGGTACAGATTGCTGCAGTGGAAAATCAGGTGAAGAAGAAAACATTTTCT 2062
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2063 CGAAAGAATCATTCAAACTTATGGAAACTCAACAAGAAGAGGAAACAGAGAAGAAAGACAGCAGAAAATTATTT 2136
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2137 CAGGAAGGTGATAAGTGGCTAACAGAAGAGGCACAGAGTGAACAGCAAACAAATATTGAACAGGAAGTATCACT 2210
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2211 GGACCTGATTTTAGTAGAAGAGTATGACTCATTAATAGAAAAGATGAGCAACTGGAATTTTCCAATTTTTGAAC 2284
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2285 TTGTAGAAAAGATGGGAGAGAAATCAGGAAGGATTCTCAGTCAGGTTATGTATACCTTATTTCAAGACACTGGT 2358
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2359 TTATTGGAAATATTTAAAATTCCCACTCAACAATTTATGAACTATTTTCGTGCATTAGAAAATGGCTATCGAGA 2432
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2433 CATTCCTTATCACAATCGTATACATGCCACAGATGTGCTACATGCAGTTTGGTATCTGACAACACGGCCAGTTC 2506
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2507 CTGGCTTACAGCAGATCCACAATGGTTGTGGAACAGGAAATGAAACAGATTCTGATGGTAGAATTAACCATGGG 2580
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2581 CGAATTGCTTATATTTCTTCGAAGAGCTGCTCTAATCCTGATGAGAGTTATGGCTGCCTGTCTTCAAACATTCC 2654
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2655 TGCATTAGAATTGATGGCTCTATACGTGGCAGCTGCCATGCATGATTATGATCACCCAGGGAGGACAAATGCAT 2728
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2729 TTCTAGTGGCTACAAATGCCCCTCAGGCAGTTTTATACAATGACAGATCTGTTCTGGAAAATCATCATGCTGCG 2802
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2803 TCAGCTTGGAATCTATATCTTTCTCGCCCAGAATACAACTTCCTTCTTCATCTTGATCATGTGGAATTCAAGCG 2876
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2877 CTTTCGTTTTTTAGTCATTGAAGCAATCCTTGCTACGGATCTTAAAAAGCATTTTGATTTTCTCGCAGAATTCA 2950
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2951 ATGCCAAGGCAAATGATGTAAATAGTAATGGCATAGAATGGAGTAATGAAAATGATCGCCTCTTGGTATGCCAG 3024
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3025 GTGTGCATCAAACTGGCAGATATAAATGGCCCAGCAAAAGTTCGAGACTTGCATTTGAAATGGACAGAAGGCAT 3098
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3099 TGTCAATGAATTTTATGAGCAGGGAGATGAAGAAGCAAATCTTGGTCTGCCCATCAGTCCATTCATGGATCGTT 3172
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3173 CTTCTCCTCAACTAGCAAAACTCCAAGAATCTTTTATCACCCACATAGTGGGTCCCCTGTGTAACTCCTATGAT 3246
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3247 GCTGCTGGTTTGCTACCAGGTCAGTGGTTAGAAGCAGAAGAGGATAATGATACTGAAAGTGGTGATGATGAAGA 3320
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3321 CGGTGAAGAATTAGATACAGAAGATGAAGAAATGGAAAACAATCTAAATCCAAAACCACCAAGAAGGAAAAGCA 3394
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3395 GACGGCGAATATTTTGTCAGCTAATGCACCACCTCACTGAAAACCACAAGATATGGAAGGAAATCGTAGAGGAA 3468
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3469 GAAGAAAAATGTAAAGCTGATGGGAATAAACTGCAGGTGGAGAATTCCTCCTTACCTCAAGCAGATGAGATTCA 3542
Query 220 ---------------------------- 219
Sbjct 3543 GGTAATTGAAGAGGCAGATGAAGAGGAA 3570
