Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- NR_027514.3
- Aligned Length:
- 3424
- Identities:
- 187
- Gaps:
- 3211
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTTGACGCTGTGGCCCGGAAGTGGAGCGGCTGTCGCAGTGCGGCTCCGGCAGTGGCAGCGGAGGCCTGTGTTTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGGCCTTCGGCAAGCGACTGAGATGGCGAGCGCAACTGCACCTGCAGCCGCAGTCCCCACCCTGGCTTCGCCTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGGAGCAGCTCCGGCACTTGGCGGAGGAGCTGCGGTTGCTCCTGCCTCGAGTGCGGGTCGGCGAAGCCCAGGAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACCACCGAGGAGTTTAATCGAGAGATGTTCTGGAGAAGACTCAATGAGGCAGCTGTGACTGTGTCAAGGGAAGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CACGACTCTGACCATAGTCTTCTCTCAGCTTCCACTGCCGTCTCCACAGGAAACCCAGAAGTTCTGTGAACAAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCCATGCTGCCATCAAGGCATTTATTGCAGTGTACTATTTGCTTCCAAAGGATCAGGCCCTGAGAACAATGACC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TTATTTCCTACAACAGTGTCTGGGTTGCGTGCCAGCAGATGCCTCAGATACCAAGAGATAACAAAGCTGCAGCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTTTTGATGCTGACCAAGAATGTGGATTTTGTGAAGGATGCACATGAAGAAATGGAGCAGGCTGTGGAAGAATG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGACCCTTACTCTGGCCTCTTGAATGATACTGAGGAGAACAACTCTGACAACCACAATCATGAGGATGATGTGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGGGGTTTCCCAGCAATCAGGACTTGTATTGGTCAGAGGACGATCAAGAGCTCATAATCCCATGCCTTGCGCTG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GTGAGAGCATCCAAAGCCTGCCTGAAGAAAATTCGGATGTTAGTGGCAGAGAATGGGAAGAAGGATCAGGTGGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACAGCTGGATGACATTGTGGATATTTCTGATGAAATCAGCCCTAGTGTGGATGATTTGGCTCTGAGCATATATC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CACCTATGTGTCACCTGACCGTGCGAATCAATTCTGCGAAACTTGTATCTGTTTTAAAGAAGGCACTTGAAATT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ACAAAAGCAAGTCATGTGACCCCTCAGCCAGAAGATAGTTGGATCCCTTTACTTATTAATGCCATTGATCATTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CATGAATAGAATCAAGGAGCTCACTCAGAGTGAACTTGAATTATGACTTTTCAGGCTCATTTGTACTCTCTTCC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCTCTCATCGTCATGGTCAGGCTCTGATACCTGCTTTTAAAATGGAGCTAGAATGCTTGCTGGATTGAAAGGGA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GTGCCTATCTATATTTAGCAAGAGACACTATTACCAAAGATTGTTGGTTAGGCCAGATTGACACCTATTTATAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ACCATATGCGTATATTTTTCTGTGCTATATATGAAAAATAATTGCATGATTTCTCATTCCTGAGTCATTTCTCA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GAGATTCCTAGGAAAGCTGCCTTATTCTCTTTTTGCAGTAAAGTATGTTGTTTTCATTGTAAAGATGTTGATGG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCTCAATAAAATGCTAACTTGCCAGTGATTAAATGAGTGCCCTTCCAAAGTTTCTTTTTACCAGAAATACAGTG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GATTGAGACTAGAACATTGCTTTCATTTGGGTTTGTAGGTTTAAAAATCTGATTCTAATCAGAAGTATATTTAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AACAAAACACTTTATTTATAAAAGATGACTCCAAAATTCATCTTAGTATTTCACCATGTTATATATTATTATCA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GCAAGTCCTTCTGAATATTATCACAGATTACTCCATGTCTCTAAAATATATTGGCATTGAGCTCATTTGTTAGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTTGCCCACCTTATTGAACAGATTTATTTTCCTTATACATACTTGTGTTGTCCTTGGTTACGTGTGTCCCCAAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGTAAATACCAAATTTTTATAAATCAAAAATTTTTTAGTGTGTAAGAGATTTTATGTAATTTTAAGGGCCTTTT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CAGTTCATCCTTTTGCAAAACCATCACCACTTAATTATACTTTTGCATCAGTCTAGAAGACTGCATATTGGAAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GCAGTGTAAATCTATAATGATGTATATTCTGGTGAGCTGAATAGGGCATTATGCATGTCCTACAGGTCTCCGCC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ACCTCTCATGCCCATCATCTTCCTTTTGTAGGTGTAATTCATAACATATGCCTTTCTGCTGTCTTTAGGTATAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TCAGCAACAGCAGTCATTCTTTGAGTGACTAATGTATACTTGGGGTTGGGGTTGAAATTCCTTAAGCCAAATGA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GTTTTAGCTTACTGTTTTGAAGTGCCATTTTGTATTGTTAACAAGTGTCATGAAGGGAAGGAACTAAAATCAAA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CTGACAGAGTGTCAAGGCAACAAAATAACATAAACAAAATAATAACATTGTACAACAGTCTAGTTCTTTTATCC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTTCATATAGAGCCTATTTTTTATATACTTTTATATTTCTCTACTGGACCAAATTCATGTTATTAACATCAGAC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TTTAATTGTGGGATACTTAATGAATATAGAACTCTAATATAAAGACTTACCTCTAGCTGAATTATTCTCTCAGG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TCCTGTATTGTATAACTTCGTTCAGTCATGTTTGGATCTTTAAGGATAATGATCAGGGAAAGCACTGATCAATG 2516
Query 1 -------------------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATG 43
|||||||||...||||||.||||..||||||||.|||||||..
Sbjct 2517 TAATTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCCCCCAAGCTGGAGTGCAGTGGCACA 2590
Query 44 ATCTCGGCTCACTGCAACCTCTGCCTCTCGAGG---TCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGG 114
.||||||||||||||||||||.||||| |.||| ||||||.||||||..||.||.|||||...|||||||||
Sbjct 2591 CTCTCGGCTCACTGCAACCTCCGCCTC-CCAGGTTCTCAAGCAATTCTCTGGCTTCAGCCTCTCAAGTAGCTGG 2663
Query 115 GATTACAG--GCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGT 186
||.||||| ||||| |.||||||.||.||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2664 GACTACAGATGCACA--CCACCATGTCCAGCTAA---TTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGT 2732
Query 187 TGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG----------------------------------------- 219
||||||||||||||||.||||||||||||||.|
Sbjct 2733 TGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCCACGTCAGCCTCCCAAAGTGCTGGGATTACAG 2806
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2807 ATGTGAGCCACCGAGCCCAGCTTGATCAATGTAATTTTAAGATTACCTAAAAATTCCATTTTGGGATAATATCC 2880
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2881 CACTTCATCAGAAATATTAGAATGATTTAAGTGTTAGGTCCTTTCCCTTATCTGTAAGTTAATGAATGTATTAA 2954
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2955 TGAGCAGTAAAATGGTTGCAAAAAACCTGAACCTGAACAATCTGAATGTACTCCTTAAAGGTATCTGAGCACCT 3028
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3029 TTTCAACCTGAATGACTACTCATTTATCTGATAAAGTGATGTAGTTTGGATATTCAACCCTGCAAACCTCATGC 3102
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3103 TGAAATTGGATTCCCAGTGTTGGAGGTGGGGCCTAATGGGAGGTGTTTGGATCCCTCATGAATGGCTTCGTTCC 3176
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3177 ATTGGTGGGGTAATGAGTAAGTTCTCGCTCTATATGTCCCTCCCCCACCCCAGAGCTGGCTGTTAAAACGAGGC 3250
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3251 TGGCACCTGGCACTTACCCCTACCCCTCAACCCATTCTTGCCCTGTGATCTCTGCTCACGTTGCCTCCCTTCAT 3324
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3325 CTTCCTGCATAAGTGGAAGCAGCCTGAAGCCCTCACTGTTTCTTGTACAGCCTGCAGAGCCGTGAGCCAAATAA 3398
Query 220 -------------------- 219
Sbjct 3399 AGCTCTTTTCTTTTAAACTA 3418