Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- NR_033855.1
- Aligned Length:
- 3722
- Identities:
- 190
- Gaps:
- 3506
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTGCGCCCGAGAGGCAGCGCTCAGACAGCGGGGAGGAGGCGGCCGCGGAGCCCCCGGAGATGGAGGGTGAAGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTGCTTTCAAAGTATCCCACGTCGTTCAGCAAAGATTCGTCATTTAGAATTCAGACCTGCCAAGACCACGGAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCTTTGTCTCAGCTCGGATATCTTCATTTCTCCTTCTTACAGTTTCCTTGTTTCCGAGGAAAAACACAAGATCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGACAACTGCAATCACCTGGTAACCAATCATGAATCTGGTATGGACCACTTTCACCCTGCACCCTGTCAGGCAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTTCCATCTTCTCACAATCTTCACAAGAATCCTACAGAAACAAGACGTATCCCCCGATTTACTGATGATGATCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTCAGCCCAGAGATGCACTCTCCATCGGCTGAACCCAACTGGAAGTCGGAGGGTAAAGGGCCCATGACTCAGTC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CGTTCAGGCTGACCCGCCTGGGGCTCAGAGCATAACAGACAAGGGTGGGGAAGAAAAAAGAATGGACTTGGAGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGCAAATGGGAAATATTCAGGCACTTCTGATCTCAGTTTGGCCAGTCGGCTCCCCTCTCTCTGACTGTAAACAC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGAGATACAGAAACTGTCATTAGAAATGAGTAGTGTTAATGATCCATGACAGAAAGCTCGTGAATTTCTACTGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGAGGAGGCTTGAGCTTTTCTGTTTTCATTCTTTCTACACATCGGGAGCGGAGCTCCCCAATGCCTTTCTGATA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CATCGCTACTTCTGCTTCACCTAATCAAAGGCACTTACTGCTGCTCAGAACCTCAGGCCTCCAACTGAACAATG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AACAGGTTTTCTCTCCATCACCCCCTGTTCTCTAGTGTGAGTAGTTAGATTACTGCTTTTATGTCTGTCTTCCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AACTACAGTCCACAAAACGGCTCATATTGAACAGTAATACAAATAAAGAGAAAAAGGAGAGAAGACAAGAACAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAAGTAATGAGTTTAGAAACTTGGAAAGTAGAAACTTCTTTGGTATGTTCCTGTTGAAAACCACTGGTCTCATC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTCCACTTTTTCACATTGCTGTTTCAGAGAAAAACTTAATTATACTTAATTATAGGGTTGTAATGTTTATAGGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTGGTTATTCTGGTTAGCCAAATTTACTGGTTATCTGTTTAGAGCCTTTGAATTTTAATTCTAGCTGACACATT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGTTAAAACATTATTAGCTTACCTTTCTTCCTTAATGAGTACTGGATCTTCCCAGAGAAAAGGTTCCCAGTCAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTACCTGGAATTTTTTATACATATTTGCAGCTGTTCTTTGAGCTCCCTAAAGAGCATAATTAGAGACATAACAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TCACTCAGATTTTCTGCCCTTCTTTGTAATAAGTCAATGAGCCAGTCATTTATTCCACAAATATTTGTTGATAC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTACTGTGTGCCTGTCAGCAGTTCTCCAAGCAGGGGCTACAAAAATAAAAAGATTGTCTTTTAATGAGGAGCAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CTTCGAGTCTTAGCTCTTGGTACTCCCTCTGTCTAGTAATATCCATTTTTATACTTAGTATTTTAATAAATAAC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TCTTCCTCAAATTATTTTAAAACACACAGTAACAGAAAAAATTATTTATTTATTCTACTTTCTCTTAATTACAC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CTGTGGGGAGCTTGGCGGGGCAGACTCTGGGTTTCCAGCCAAGGTCTTTCTGTCCACCTGGGGGCAGCAGACCC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TCACACAGAAAAGTACCTCGAAGGAAGCAATTGGCTTTCTGAGCTCCTGGCTTTCAAACACAAGTCTTCCAAAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TATGGACCCATGAATATTCTAAAGACTTATACTCGAAGGACGCTTCCAAAATCAAATAAATTTGGGTTGAACCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGTTAAATAGGGTTTTAACCCTGCAGGACTTCTCACGATGTTTAATATACTTTTTTTTTTCTTTTCTTTCTTTC 1924
Query 1 ----ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTC 70
|..|||||||..|.|.|.| |||||||||||||.||||||.|||||||||||||||||||||||.|||||
Sbjct 1925 TTCGACAGAGTCTCGCTGTATTG-CCAGACTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCCGCCTC 1997
Query 71 TCGAGG-TCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGC 143
|.||| ||||..||||||||||||||.||||||.||||||||||||.|||||||.|.|.|.||||.||||.||
Sbjct 1998 -CCAGGTTCAACTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCACCACCACGCCCAGC 2070
Query 144 TAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCA 217
||||||||||| ||||||||||||||||||||||||||||||.||||||.||||||||||||.|||||||||||
Sbjct 2071 TAATTTTTTTT-TATTTTTAGTAGAGATGGGGTTTCACCATGCTGGCCAAGCTGGTCTCGAATTCCTGACCTCA 2143
Query 218 AG------------------------------------------------------------------------ 219
.|
Sbjct 2144 GGTGATCCACCCGCGTTAGCCTCCCAAAGTGCTGACATTACAGGTGTGAGCCACTGCGCCGGGCCTAATATAGT 2217
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2218 TTTGTCGTACAAAACACGATGGCATACTTGCTCTGTGCAAAGTACATCACCCACAGTGGCCTATTTAAACTTGG 2291
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2292 CAACAGTCCTATGAGATAGGCACTAATTGTGTTCCCCATTTTACAAATGAGGAAACAGAGGCACGGAGCTTATA 2365
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2366 ACTGGTGGCTGAGTTTCCGGTTGGGGCCATCTAGTTACAGAACTTGCATGCTTAATCATGACACCGTAATGCTT 2439
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2440 TGCAATGGGAGATTCCAAGAGGGGGAATTTGACATTCAGTGTTTCCCAAATTTATTTGGCTTTGGAACCCTTTT 2513
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2514 ATTCCTTCTAATCAACATAGAGGACAAGTATGTAATGGGATACTCTGATAAATGCTTCAATAAAGCAATGGCTT 2587
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2588 TATGCCGCCCCGCTTTAAAAGATAACTAAAAATATAAGTCCACAGGCCCATCATATAATTGAACAGGTAACGAC 2661
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2662 TGAATTTTGATTTGATGGAAAGACTCTTATCATATTAATCTAAGTTCTCAAAGTGAATGCCACTAAACCAAGAC 2735
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2736 TATTCAGTGTATTTGAAGTATGTACAATACCAGTCCGAATTGGGACTTCTCAGGAAGAAAAAAGGGTATATGGC 2809
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2810 AGATGGGTAAGAATAGAAAGCCACAGGTCTAGCAGGGAAGCTAAATATGGTGTGGAATGTGTTGGGGAGATGGG 2883
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2884 AAAAATGCTCACCTCTTCATGGAAGTTCGAAAAGAAGGCTGAGATTCTAAATAATGCTGGAGTATTGCAGCTGG 2957
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2958 AACAAGCATGATAGCAATGGCCAACACAAGGCCTTTCTAGAATAAATCTAAAACAATTAAGAGATAATATGATA 3031
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3032 GCATTGGGAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATA 3105
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3106 TGTAACTAACCTGCACATTGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAAAAAGAAAAGAAAAAA 3179
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3180 AAAAGAGATAATATGCCAGGGGGTTGATGCCAGGTAATACTGATAGTTACCTTAAACAATGTTTTCTCAACTTC 3253
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3254 AGTTTTTTACACACCAACTTCATGATTTTTTTCTATCAAGATACGACTACTATTATTTATCTAGCGTTTTTTAA 3327
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3328 ATTGTCTTATATCTTTGCTTAAATTTATTTTTTTAAACATTAATATCTGAGAATTCATCATTTTGAAGGAATAA 3401
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3402 TTATATTGTTCTAATATATAAATTTTAAAGTTAATATCTTTATTCCATCTAAAGTGGTATGTGTACTATTCTTT 3475
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3476 GGAAATGATTTTCTAAAGGATTAAAAACTTGCCAGTGTTGGAAAAAAAAGGAAACAGGAAAATTAAGACTGAGT 3549
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3550 TAAAGAAGGTGAAAACAAAATTGAAGAATAAGACTAAAGGTTAGACATGAAATAGATCTGTCTCTAATTAGAGG 3623
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3624 TGCAATGTCAAATTTTTTTGTAGATCGTTCTAAAAATATCACTTGTTCTTTTGCTTGTATTTTAATTCAATGAT 3697
Query 220 ---------------------- 219
Sbjct 3698 TAAATAAACAGATGACCTAGTT 3719
