Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- NR_049794.1
- Aligned Length:
- 4390
- Identities:
- 189
- Gaps:
- 4173
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTATCAACTCCATCTGTCACAAAAATTAAGGCTAAATCTCCTCTCCAGAAGCAGAGGGAGCCGGGGCTCCGACG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCTCAGCGTCGGGCTGTCTGCCTCTCCCTAGAGGCCAAGTGAATTTGAAATGGCAAAAGTCACAGCCGGAGGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCAGCACTAGGAGATTCCTCCGGCTGCGGGAAATCTTCCTGTACCTGCTGAAGCTGCTGCGTTCCTCAGAGGCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTTGGTCTGCCGTGGGAAGCTGCACCTCTGCAGTCCCCAAAACCAAAATCAAACCTTAAAAGAGCCAGACTGAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAGCCAGTCACCACGTAAGACATCTGGACCACCTTCAGACTCGCATGCTGTGAGGAAGCCCATGCTTACTATGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTAGAGGATACATGGAGAAGGAAAGAGATGCCTGGCCAGCTCCCTGCTGTTTCAGCCATGCAGAGGTGCTGAGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGCTAATTGGAGGGGATAGTATGAGCCTCCAAAGATTAGGGAAGAAAATTGCAGTTGAAGAAAACTTGCTTTGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TTCAATGCAAAAATAATGGGATGAATGGCATGCTGAAATATCATATGACTTACGAAAATGATGAATGGTTTATT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAATCTACATATGTGGAACCCATGAATGGGAGTCGGAGAAGGGGGCAACTGTATACGCAAAAAGCTATCATAAT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGCCAAAATAGTGATAACAATGTTGAAACACTACTGGGATTACTACTGTTAATGACTACCAGTGATCAAGCACC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TCCCCTGCCCCAGTGTTTGCCTGCCTTGTTTGAAGACACGAAAAAATGTACACAAAATGATTTAGAACTGTTGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACTTTTCAGAAAATAATTTAAAATCATCTACCTCATAACTAAAGGACACTGAATTGGAGCCAGCTGATGTAAGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCTTACCTTGGTTGCCACCTTCTGGTCTCTGTTTGAGGAACAACTGCATGTGATTAAGGATGAAGAAACTGAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ACCCCAAGAATTTAAGTAATTTGTTCAAGGCAACACACTGCTATGTGGTAGAACTACAAATTGAGCCCAAATAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TCCAGCTTCAGATACTATGCAAAGGTATCCTAGGTGTGGGGGTGATAACCTGGTGACAATCCCTTCTCAGAAGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAAACAGGTCCCATCTACAGAGGTGAAGCAGAGTGTGGAACTGAAAAACTCAATGGAAGAATGGCTATTAAGAT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TTAGGACGGCTGGGAAATAATAAAGTAATAATAATAATACTAGGTATTGACGTGTGCTACATGCCAGGCCTTGG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GTGACATTTGGATTGATTCCCATTTTCTTTACTTTTCAGCAGTGGGGTCTTTCACCTTTCAAGCTCTGCCTGAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AAGTCAACATGGTGGCATTTGGCTAGGTTCTTTTAGGCAACCAATTGTTTTAACATGATTTGTTGAAAAGCCTA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTCTCTCTTTCATTGAACTATAATGCTAGCTCTGTCATAAATCAAATTTTCATTTGATTTATGATATGAAAATT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ATATGCATTTGATTGATATGCATTTTTTCTCCAATGATACTCAACTGTCTTAATTATATAATTTTGTAGTAATT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CTTGGTATCTAATTAGGCAAATACCCACTCCCAACCCTGTTTCTTTTGTTTTTAAATCCAGGGGTGTTTTGGAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATTCTCGTTCATTTGTGCTTCCACCTACATTTTTCAGTTAACTTGTCAGGTACGAAAAAATAAAAGGCAAAATT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTTTATCCTTAAATCAATTTGGGCAAGTTTGCAGTTTTTTCTTGTATTGTAACTTCCAATCTATGAATATGATC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TATTTTTTCACCAATTTATGGCTTCTTCCAATAACATTTTATAATTGTCTTTTTAGAGGCCTTATCTTTTGTTT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGATTCATATCTAGGTATTTAATATTTTTGATGCTGTTATAAATGGTATTTTTAAAAATATATACATTTTTAAC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TATTTCACATAGAAAACTTTAATGGATTTTTAAAATGTAGATTTGTATTCAGTAAACCTGTTAAAATCTCTTAG 1998
Query 1 ---------------------------------------------------------ATGGAGTCTCATTC-TG 16
|.|||||.||..|| ||
Sbjct 1999 AATGTCTAAGAGTTTATTTATTCAATTTGATTTTCTTTTTTTTTTTTTCTCCTGGAGACGGAGTTTCGCTCTTG 2072
Query 17 TCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCC 90
|.||||||.||||||||.||||||||||||||.|||||||||||||||.|.|||.||.|.||||||.|||||||
Sbjct 2073 TTGCCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAACCTCCGGCTCCCGGGTTCAAGCAATTCTCC 2146
Query 91 TGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAG 164
||.|||.||||||.||||||||||||||||||||.|.|.|.|||||||||.||||| |||||.||||||||||
Sbjct 2147 TGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGCTCCCACCACCATGCCCAGCTAA--TTTTTGGTATTTTTAG 2218
Query 165 TAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG------------------- 219
||||||..|.||||||||||||||||||||||||||||.||||||||||||||.|
Sbjct 2219 TAGAGACAGAGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGACTGCTTTGGCT 2292
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2293 TCCCAAACTGCTGGCATTACAGGCGTGAGCCACTGCGCCCTGGCCTATTCTACTGGATTTTCTATGCAATTGTG 2366
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2367 TTATAACTCATCATAAAGATAATTTTATTTCTTTTCCACAATCTTTACAGGTTTAATTTTTTTCTATGCCTTGC 2440
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2441 TGCACTCTCTATGATTTCCAGTATTGGCACTACTCTGGCCTTTGGTCTTTGCTCTTGCATCAGCCTTTCATAAT 2514
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2515 TGGGTATGTTTGTTGTAAGTTTTCTGTAGAGAGTCTTTATGAGGTTAAGAGATTTGTTTCATTTCTAGTTTATT 2588
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2589 AAGAGATTTTATTATAGATCAATGTTAAATTTTATCAAAATTTCTCCATTGCATTTCTATTGAGATGATCACAT 2662
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2663 GATTATTAAAAATTAGTATAAAGATTTATTATTTTGATATTTTAAAATCAGGTTTATTGAGGCATAATTTATAT 2736
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2737 ATAATAAAATTTACCCTATTAGAGTATCCAGTCCAGTAAGTTTTGGTAAATGTATGCGAATAACACAATAAACA 2810
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2811 GGTTTAGAACTTTTCCATCACCACAAAAAGTTTATCAGGCCCCTTTGCAGTTAATACTCACCTTCTCTCCAGCC 2884
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2885 CCAGTAAACCATGGATCTGCTTTTTGTTACTGTAGTTTTTCCTTTACTTTGATTTTTTTGAGTGTTAAGCCAGC 2958
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2959 CTTACATTTCTGAGTTAACTTGGTCATGATATCTTCTACAAACATTAATGAATTTAGTATGATTGGCTGATGCC 3032
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3033 TTTGCTTTCCTATACTGTCCTTGCCTGGTTGGTACAAGGATTATATAATACTTATAAAGTGAGTTGAAGACAGT 3106
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3107 TTCCTCTTTTCACCAGCTGGAATAATTTATGTATTATTGAAATTAATTGCTCCTTAAATACTTGGCAGAATTCA 3180
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3181 CTACAAAGGCACTTAATTCTAGACCTTTTGGAGGAAGATAAAATACTGATTTTTTAAATCATTATTTTATTTTT 3254
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3255 GTAATACAGCTTATTTTTCCAGAAACTTCTACTTTTCGTTTACATCTTCAAGTCAGATTAAAGTTGTATTAATA 3328
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3329 ACCCCTTATTATTTAAATCTCAGCAGAATGTGAAGTTATGTTCCCCCTTTGTATCCATTTTTTTCTCTAGATAT 3402
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3403 TTTTCTGTTACCTGTTTTAAATTTAATTCCATTGTGGTCAGAGATAATACTTTGTATGACTTGCATTCTTTTAT 3476
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3477 GTATATTGAGACTTGTTATAAGGCACAGAGTATGGTTTATCTTGGTAATCATTCGTGGCACACTTAAAAATCAT 3550
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3551 GTGTTTTCTGCTATTGTTGAGTGGGATGTTCTGTAACTGTGAATTAGGTCAAGTTAGTTGACAGTGTTGTTCAA 3624
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3625 GTCTTTTATATTATTACTGACTTTCTTTCTACTCACTCTATCAATTAGTGAAAGGTGTCAATATTTCCAGTTAT 3698
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3699 AATCATGGATTTGTCTATTATTACTTTCAGTTAGAAATTTCTAGCTGAAATTATCTATTTCTACTTTCAGTTAG 3772
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3773 TGTTAGCTTGCTATATCTTTTTTCCATCCTTCTTCTTTTAACCCAATGTATCTTTATATTGACATTACATATAT 3846
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3847 GATTTATATTATATTATGTTACTATATCTTGTATGCAGCATATATTTGGATCTTTTTTATCCAATCTGATGATC 3920
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3921 TTTGCTTTTTAATTAATGTATTTAGATCATTTACATTTACTGTGATTATTAATATGTATTAAGTTCAAATCTAC 3994
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3995 CACTTTGGTATTGAATATCTAATTGTCCCATTTGTTCTTTGTTTCAAAAAAACTCTTTTTTTGCCTTTTTTTAT 4068
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4069 ATCAAGTATTTTAAAATTCTATTTCATCTTCTTTGTTTGCTTATTAGCTATAACTTTATTTTGCTAATTTAGTG 4142
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4143 GTTGCTTTAGGGTTTATAGTAAACATCTTCAACTTATCACATTCTATGTTCTAGTCATATTATATTATTTAACA 4216
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4217 CATAGTATAAAAACTTTATTGTAGTATACTTTCATTTTCCTCCAGTAATTGTGCGATTCTTGTCATCTATTTTG 4290
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4291 CTTCTACATGTTATAAACTCTACATGATTTTGTAATATTTTTGTTTAAACAATATTTATTTAGACTTAATAATA 4364
Query 220 ------------------------ 219
Sbjct 4365 AATAATAAAAATATATGCTAACCA 4388
