Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- NR_075083.3
- Aligned Length:
- 6613
- Identities:
- 193
- Gaps:
- 6397
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGAGCCACAGGGACAGCCGGTGGGCTCGGTGGGGCTGCAGAAGGTCGGGGCTGCACTGCTCTCGGCCCCCACAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGTTGGTTGGTTGGCGTGGTAAGTGCCCTGATCCCTGGTCCTGAGAACTCAGGCTGGCACAGGGATTCCCAGGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CATCTACCACCACGCAGCTGGAGCAGGGCTGAGCCCAGGAGCATGGAGATGGACGCCCCCAGGCCCCCCAGTCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGCTGTCCCTGGAGCAGCATCGAGGCCCGGGAGGGCTGCCATCAGCAGCAGTGAGCCATCACCTCTGCTGGCCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CATTGTGTTTTTTCTCCTAGAACTGTGGACAACGGAAGGCTGAGCCCCATCCATTGAGTTCCTGGGGCCCCACT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGAGGGGCTGCTGTGGCCAGGGTGCACGGTCACAAATGAAGACACCAAGGCGCAGAGAGGTGACTCAGCCTGCC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTCAGTCACCTATCTGCTCCTGGAGGTGATCCCCGACTCCATGAGGAAGCAAGAGGTGCGGACGGGCAGGGAGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCGGCCAGGGCCACGGTACGGGCTCCCCAGCCGAGCAGGTGAAAGCCCTCATGGATCTGCTGGCTGGGAAGGGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGTCAAGGCTCCCAGGCCCCGCAGGCCCTGGATAGGACACCGGATGCCCCGCTGGGGCCCTGCAGCAATGACTC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAGGATACAGAGGCACCGCAAGGCCCTGCTGAGCAAGGTGGGAGGTGGCCCGGAGCTGGGCGGACCCTGGCACA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGCTGGCCTCCCTCCTGCTGGTGGAGGGCCTGACGGACCTGCAGCTGAGGGAACACGACTTCACACAGGTGGAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCCACCCGCGGGGGCGGGCACCCCGCCAGGACCGTCGCCCTGGACCGGCTCTTCCTGCCTCTCTCCCGGGTGTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TGTCCCACCCCGGGTCTCCATCACTATCGGGGTGGCCGGCATGGGCAAGACCACCCTGGTGAGGCACTTCGTCC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GCCTCTGGGCCCATGGGCAGGTCGGCAAGGACTTCTCGCTGGTGCTGCCTCTGACCTTCCGGGATCTCAACACC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CACGAGAAGCTGTGTGCCGACCGACTCATCTGCTCGGTCTTCCCGCACGTCGGGGAGCCCAGCCTGGCGGTGGC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGTCCCAGCCAGGGCCCTCCTGATCCTGGACGGCTTGGATGAGTGCAGGACGCCTCTGGACTTCTCCAACACCG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGGCCTGCACGGACCCAAAGAAGGAGATCCCGGTGGACCACCTGATCACCAACATCATCCGTGGCAACCTCTTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CCGGAAGTTTCCATCTGGATCACCTCCCGTCCCAGTGCATCTGGCCAGATCCCAGGGGGCCTGGTGGACCGGAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GACGGAGATCCGGGGCTTTAACGAGGAGGAGATCAAGGTGTGTTTGGAGCAGATGTTCCCCGAGGACCAGGCCC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTCTGGGCTGGATGCTGAGCCAAGTGCAGGCTGACAGGGCCCTGTACCTGATGTGCACCGTCCCAGCCTTCTGC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AGGCTCACGGGGATGGCGCTAGGCCACCTGTGGCGCAGCAGGACGGGGCCCCAGGATGCAGAGCTGTGGCCCCC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GAGGACCCTGTGCGAGCTCTACTCATGGTACTTTAGGATGGCCCTCAGCGGGGAGGGGCAGGAGAAGGGCAAGG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAAGCCCTCGCATCGAGCAGGTGGCCCATGGTGGCCGCAAGATGGTGGGGACATTGGGCCGTCTGGCCTTCCAT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GGGCTGCTCAAGAAGAAATACGTGTTTTACGAGCAAGACATGAAGGCGTTTGGTGTAGACCTCGCTCTGCTGCA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GGGCGCCCCGTGCAGCTGCTTCCTGCAGAGAGAGGAGACGTTGGCATCGTCAGTGGCCTACTGCTTCACCCACC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGTCCCTGCAGGAGTTTGTGGCAGCCGCGTATTACTATGGCGCATCCAGGAGGGCCATCTTCGACCTCTTCACT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GAGAGCGGCGTATCCTGGCCCAGGCTGGGCTTCCTCACGCATTTCAGGAGCGCAGCCCAGCGGGCCATGCAGGC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AGAGGACGGGAGGCTGGACGTGTTCCTGCGCTTCCTCTCCGGCCTCTTGTCTCCGAGGGTCAATGCCCTCCTGG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCGGCTCCCTGCTGGCCCAAGGCGAGCACCAGGCCTACCGGACCCAGGTGGCTGAGCTCCTGCAGGGCTGCCTG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CGCCCCGATGCCGCAGTCTGTGCACGGGCCATCAACGTGTTGCACTGCCTGCATGAGCTGCAGCACACCGAGCT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GGCCCGCAGCGTGGAGGAGGCCATGGAGAGCGGGGCCCTGGCCAGGCTGACTGGTCCCGCGCACCGCGCTGCCC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TGGCCTACCTCCTGCAGGTGTCCGACGCCTGTGCCCAGGAGGCCAACCTGTCCCTGAGCCTCAGCCAGGGCGTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTTCAGAGCCTGCTGCCCCAGCTGCTCTACTGCCGGAAGCTCAGGCTGGACACCAACCAGTTCCAGGACCCCGT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GATGGAGCTGCTGGGCAGCGTGCTGAGTGGGAAGGACTGTCGCATTCAGAAGATCAGCTTGGCGGAGAACCAGA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TCAGTAACAAAGGGGCCAAAGCTCTGGCCAGATCCCTCTTGGTCAACAGAAGTCTGACCTCTCTGGACCTCCGC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GGTAACTCCATTGGACCACAAGGGGCCAAGGCGCTGGCAGACGCTTTGAAGATCAACCGCACCCTGACCTCCCT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GAGGGTGAAATTCATGTACCATAAAATTGACTGTTTTAGGCGGGTCCCAGAGGCTGATGCCTGTAATCCCAGCA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTTTGGGAGGCCAAGGCAGGTGGATCACTTGAGGTCGGGAGTTCGAGACCAGCCTGGCCAACATGCCTCCAGGG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CAACACCGTTAGGGATGATGGTGCCAGGTCCATGGCTGAGGCCTTGGCCTCCAACCGGACCCTCTCCATGCTGC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ACCTGCAGAAGAACAGCATCGGGCCCATGGGAGCCCAGCGGATGGCAGATGCCTTGAAGCAGAACAGGAGTCTG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AAAGAGCTCATGTTCTCCAGTAATAGTATTGGTGATGGAGGTGCCAAGGCCCTGGCTGAGGCCCTGAAGGTGAA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CCAGGGCCTGGAGAGCCTGGACCTGCAGAGCAATTCCATCAGTGACGCAGGAGTGGCAGCACTGATGGGGGCCC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TCTGCACCAACCAGACCCTCCTCAGCCTCAGCCTTCGAGAAAACTCCATCAGTCCCGAGGGAGCCCAGGCCATC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GCTCATGCCCTCTGCGCCAACAGCACCCTGAAGAACCTGGACCTGACAGCCAACCTCCTCCACGACCAGGGTGC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CCGGGCCATCGCAGTGGCAGTGAGAGAAAACCGCACCCTCACCTCCCTTCACCTGCAGTGGAACTTCATCCAGG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CCGGCGCTGCCCAGGCCCTGGGACAAGCACTACAGCTCAACAGGAGCCTCACCAGCTTAGATTTACAGGAGAAC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GCCATCGGGGATGACGGAGCGTGTGCGGTGGCCCGTGCACTGAAGGTCAACACAGCCCTCACTGCTCTCTATCT 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CCAGGTGGCCTCAATTGGTGCTTCAGGCGCCCAGGTGCTAGGGGAAGCCTTGGCTGTGAACAGAACCTTGGAGA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 TTCTCGACTTAAGAGGAAATGCCATTGGGGTGGCTGGAGCCAAAGCCCTGGCAAATGCTCTGAAGGTAAACTCA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 AGTCTCCGGAGACTCAATCTTCAAGAGAATTCTCTGGGGATGGACGGGGCGATATGCATTGCCACAGCACTGTC 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 TGGAAACCACAGGCTCCAGCATATCAATCTCCAGGGAAACCACATTGGGGACTCCGGGGCCAGGATGATCTCAG 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 AGGCCATCAAGACAAATGCTCCCACGTGCACTGTTGAAATGTGATCCTGGTGGACGGATCAGGAGAATGGGCAG 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 ATGCTCAGCTGGAAGCTTTTGAACAGAAAGGCCGACTTCTGGGGGGCCTGTCTGGGAGCTGGGAACGCTGCTTG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 CTCAGCACGAGAGCCGGGCTCTGCAGGGAGGAAGGAGAGGTGCTGCCGGAGGAGGTCGTGAGCTCCTCTTCTGC 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 TGCAGGAGTGGTCCAGGCAGGGGGTGACGGGTACTCTGTTATGGCACAGAGAAGGGAGGGGCCACCCCCAAGGG 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 ACTAGGGGCCAAAGGCCTGAAAGCTGAGCAGTACAGGAGGCTGGTTCCAGCTTTACACCCTGAGGACTTCATGT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 GTCCCCAACCTTTAAAAATGTTTATTACTGCCCCTTTCCACTCACCTGGTTAAAAATCATCCCATGCTCTGAGA 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 TGAGCTGCCACCTCAAGCCCGTGAGGAGCATCCGTTTGGTAGGGGTAACAGAGGGGACCCTTCTTTATCTTCTC 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 AAGAAGAAGATTTCAGGGTATCATCCTTACAGACATGAAAAAGCTATGGGAAAATTGTGAAGATAAATGAAAGT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 TTTAATTCTAGGATTCTGGAAACAGAGACAGTAAGAGTTCTCCAAGGATTTTGCCTTTTTTGTTTGTTTTTGAG 4440
Query 1 ATGGAGTCTCATTC-TGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCG 73
||||||||||..|| ||||||||||.||||||||.|||||||.||||||.||||.||||||||||.|||||.||
Sbjct 4441 ATGGAGTCTCGCTCTTGTCGCCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCCCTGCAACCTCCGCCTCCCG 4514
Query 74 AGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAAT 147
.|.|||.|.||||||||||||||.||||||..|||||||||||.|||||||||.|||.|||||||||||||||
Sbjct 4515 GGTTCATGTGATTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGAATACAGGCACCCGCCACCATGCCCGGCTAA- 4587
Query 148 TTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG-- 219
||||||||.||||||||||||.|||||||||.||||||||||||||||||||||||||||||||||||.|
Sbjct 4588 --TTTTTGTAGTTTTAGTAGAGACGGGGTTTCATCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTG 4659
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4660 ATCCATCAGCCTGGGCCTCCCAAAGTACTGGGATTACAGGCATGAGCCACCACACCTGGCCCCATTTTTTATTT 4733
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4734 ATTACAAAATCAAAGACATGGGTGATGCCTGGCACATGTTGTCTGGAGTCTGGCACACTGGTTATCAATAGCAC 4807
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4808 ATTCAGTGTATTCAGTGATGTCATTCTTTATTTATTTTTGAGACAGAATCTGTCACCCAGGCTGGAGTGCAGTG 4881
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4882 GCATGATCTCAGCTCACTGTAGGCTCTACCTCATGGGTTCCAGTGATTCTCCTGCCTCGGCCTCCCAAGTAGTT 4955
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4956 GGGTCTACAGGCACGCACCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGA 5029
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5030 TCAGGCTGGTCTTTAACTCCTGACCTCAAGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGTG 5103
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5104 TGAGCCACTGCACCTGGCAGTGATGTCATTCCTTACTAGGCTTCCAAAGCCACTGCTGTGGCCACAGCTTCCAT 5177
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5178 GGAGACAGGCAAGCTGAGCCTCTATGTGGCACCAATTCCTGCAGCTGTTTGTGTTGGAGGGAAAAAAATCCAAA 5251
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5252 TGGACATCAACAGCTTTCATCAACTAAATAACCACAGAAAATATTTATGAAGACTATAAAGCAATGATTACTTT 5325
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5326 TGAATTGGAAAGGAATCACTATTATTTGAAATGTTTCTTCAAAAGTGAGCATCCGGACAGGAACCATCATGGAT 5399
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5400 GCTGAGGCCATGGATGAAGGCCTACTCGGGAAGATGATATCCTTGCAGTCTCAAAACGGCACCCCACAAAGGTG 5473
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5474 ATATCCTAATTTACAAAGGGAAAAAGGTACCTTAATCTGAAATCTGGCAAATGCAGCCTCAACAGAAGTGACAG 5547
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5548 AATTGAACATCGCCAATAATGGGACACACAGACATCACATGCCCCCAGTCTGATGCACCACGGAGTCGTCTCTG 5621
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5622 ATGTATTCTTGTCAAAAAATGTTTGCCTGATTCTAATCATGAAAGAACAATTAGAAAAAATCCAAATTGACAGA 5695
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5696 TATTCTGCAGAATAAATGGCCTGACCTCATCAAAAACATCAATGTCATGAAAAACACAAAACATTGCAGATAGC 5769
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5770 GTGAAATTAAAGATTACAGAGATATAATTTAATGCAAGATCTCTGACTGGATCCTAGACTGCAGGAAAAAGTCT 5843
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5844 GCTATAAAGAACATTTGGATCACTTGTAGTAGCTGGGAAATAAAACAAAACATTATTTGTAAAAGGGGGGAAAT 5917
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5918 CTGAACATGGGTCTTGCAGTATTTATGACAGTTTTTGCGGGGCAGAGATTTCTAGATTGACAGCTGTTTTAGTA 5991
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5992 CTTTCAAGGTGATGCTCTGTCTGCTGGTTTGCATTGTTTCTGTCTGAGTTAAGAGACTGGCAGAACACAGAGTT 6065
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6066 GCAGTAGCCAAACACTGGAGAAAGCTGGGCCCTACAGAAACCTAACGCTGAAGAAACCTCAGGAGCCAAACTGG 6139
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6140 TGGAGAAAACAAAGAGTCCTCCCTCTCTCCCTTTTCAAATAATGATCATACATCTTCAAGCTGTCTGAAATGGT 6213
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6214 TAAGGAGTTCAGTCTGTCGTCAGGCACACACCAGAGCCAGCTAGCCCACACAGACCCCATCAGAGCAAAACAGA 6287
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6288 CAAGAGAATTTAATTCATATCCACATAGAAAGGACTTCTAGGTAGGAGGTAGACCCTTTAGCTCCCTTCCAATT 6361
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6362 AAAGGAGTCCCCAATTCTGGCACCTGAGAGTCCCCTGGGTCTAACAGCTATGATATTTATGTAGTGTGTTGCTT 6435
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6436 ACCTAAATGAATACAATTTCCTTCCAGACACGTGACACTGATATTAAAGTGCTAATGAGAGGGATCTATTTCTT 6509
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6510 CTTGTACGCTAAAAGAGAAACAGCAGTTCAGATTTCCCATCAGAAGTCCGAGGACTTTGTTCTTGATAACTACT 6583
Query 220 --------------------------- 219
Sbjct 6584 ACCAATAAAAATTGAGTATTTGAAAAA 6610
