Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
NR_104274.2
Aligned Length:
3172
Identities:
189
Gaps:
2956

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGTACTGGGCTGGCTGCGGTGGCGCGCGGGCGCGGCACCCGGAAGTCGGCGGCGGTGGCGGAGGCGACCTCGCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACCTGTGTCAGCAGAGCCGCCCTGCACCACCATGTGCATCATCTTCTTTAAGTTTGATCCTCGCCCTGTTTCCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAAACGCGTACAGGCTCATCTTGGCAGCCAACAGGGATGAATTCTACAGCCGACCCTCCAAGTTAGCTGACTTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGGGGGAACAACAACGAGATCCTCAGTGGGCTGGACATGGAGGAAGGCAAGGAAGGAGGCACATGGCTGGGCAT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CAGCACACGTGGCAAGCTGGCAGCACTCACCAACTACCTGCAGCCGCAGCTGGACTGGCAGGCCCGAGGGCGAG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CACAGCAAAGGGAGACGTCATTTGCTACTATGGGAACCGAGGGGAGCCTGATCCTATCGTTTTGACGCCAGGCA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCTGCCAGACCCGGCCATCGAGGACCAGGGTGGGGAGTACGTGCAGCCCATGCTGAGCAAGTACGCGGCTGTGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCGTGCGCTGCCCTGGCTACGGCACCAGAACCAACACTATCATCCTGGTAGATGCGGACGGCCACGTGACCTTC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ACTGAGCGTAGCATGATGGACAAGGACCTCTCCCACTGGGAGACCAGAACCTATGAGTTCACACTGCAGAGCTA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ACCCCACCTCTGGGCCTGGCCAGTGGGCTCCTGGGGGGCCCTGCCTTGAGGGGCACTGTGGACAGGAAACCTTC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTTTGCCATACTGCATTGCACTGCCCGTGGCTTGGCCAGCATCCCCCGGATCAGGGCCCTGTGGTTTGCGTGTT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ACCCATCTGTGTCCCCATGCCCAGTTCAGGGTCTGCCTTTATGCCAGTGAGGAGCAGCAGAGTCTGATACTAGG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCTAGGACCGGCCGAGGTATACCATGAACATGTGGATACACCTGAGCCCACTCTTGCACATGTACACAGGCACT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CACATGGCACACACATACACTCCTGCGTGTGCACAAGCACACACATGCAAGCCATATACATGGACACCGACACA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GGCACATGTACGTGCACAGGTGTGCTACACATGTGCACACATGCACAGTTGCACAGACACACACACACAGGTGC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ACACACACGATGCCGAACAAGGCAGAAGGGCGACTCTCACCTCTCATGTGCTTCTGGCCAGTAGGTCTTTGTTC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TGGTCCAACGACAGGAGTAGGCTTGTATTTAAAAGCGGCCCCTCCTCTCCTGTGGCCACAGAACACAGGCGTGC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TTGGACTCTTGACAAGCAGACCTGCTCCTGCAGAGGAGACAGCCACATTTGGAATTGGGCACCGAGAAGACCTG  1332

Query    1  -----------------------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGG  39
                                               |.|||||||...||||||.|||||.||||||||.|||||
Sbjct 1333  AGAAAAACCCACTCTCTCTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGG  1406

Query   40  CATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTG  113
            ||.||||||||||||||||||||||.|||||.|.||.||||||.|||||||||||.|.||||||.||.||||||
Sbjct 1407  CACGATCTCGGCTCACTGCAACCTCCGCCTCCCAAGTTCAAGCAATTCTCCTGCCCCAGCCTCCTGATTAGCTG  1480

Query  114  GGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTT  187
            |||||||||||....||.|||||||||.|||||   |||||||.|||||||||||||.||||||||||||||||
Sbjct 1481  GGATTACAGGCGTGTGCCACCATGCCCAGCTAA---TTTTTGTGTTTTTAGTAGAGACGGGGTTTCACCATGTT  1551

Query  188  GGCCAGGCTGGTCTCGAACTCCTGA----------------CCTC---------AAG-----------------  219
            ||.|||||||||||.||||||||||                ||||         |||                 
Sbjct 1552  GGTCAGGCTGGTCTTGAACTCCTGACGTGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCG  1625

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1626  TGAGCCACCACGCCTGGCCGAAAAACCCACTCTCATAACAGAAGTGCAGACTCATTGCTAGATTCAGTGCCCTT  1699

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1700  GAGTGTGCCAGAGGTCCTCTGTGTTTGAGACAATCCTGTGTGTGCCAGGAGGCTCCGTGTGCACCAGGGGCTCT  1773

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1774  CAGAATCCCGCTTACCCAGCTGGAGACCATGCCTCTGGCAGCCCCATCTCAGCCAGCCCTGCTCTCTCCCTCTT  1847

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1848  CCCTCCAGGTGAGGCAAACTTCATAGGAATCTGTACCTGAATGTGAGCTCCTGATAATAAAACTCTGAGGCTTT  1921

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1922  GGTGAGCGCATTTCGAGGCCTTTCCCTTGTATGCAGGGTGCCAGTGGGAGCTGCTATGTCTCCTGTGCAGCCAG  1995

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1996  ACACCCTGGACGAGGCCCTTCCCACCTCCCCCTTTCCTCACGGCTTCTTCAGCACCACATGTGGATGCCTGTGG  2069

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2070  GTCAGTCCATCTGTCCATGGGCAGGGGCCGCTGTGAGAGACCCCATGCGCGTGGGATGTGGTAGATGCTGATTA  2143

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2144  TGGGGCCAGCCACCCATACAGGTCTATCAGGTCGCAATGGAGGCCCCACTGGAGCGGGAGGCAGGCTGGCCTGG  2217

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2218  ACTTCTGTTGGATGATGGGGGCCAGGGGATGGTAGGAGGGGCAGGAGAGCAGGTCTGCATCTGTCTCAGCCCCA  2291

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2292  GGAGCTCCTGGTTTGGGGCCAGCTCTAAGGAGCTTCATCCCTGAGCCTGGCCGAGTATAAGGGGGTCCCGGATA  2365

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2366  TCCAATGCTGAGACCTAGACTTTTCTAAGCCTCTGCACCCAACCCCTAACTTGGCCTTTTCAGACCCATGAGAG  2439

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2440  TGCAGGGTGGGTGTGGACCTGCGCCAGGGCTTCCCAGCCTGATTGTGACATGATGTGAGTCCACCTAGGGAGGA  2513

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2514  GCAGGGGCCTCCCCGTCTCTTCCCCTTCTTGCCCAGACCACTTTGCTGGGCTCAGAGCCTTCCATGGCTCACTT  2587

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2588  TGAACTCAGAAGAGTTTCCCAGCTGCGACCCAGGCTGCACCCCCAGGCCTGAGGAGAAACTGAGGCCCCACATC  2661

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2662  CCATACGTGTCCTCTGAGTCAGGACAACAGGCTCCCGGCTGGGGGCACTGCCCTTGCTGCCAACACATTCACCT  2735

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2736  GCCCCAGTGGCTACCATGTCCTGTGCCGGTGACCAGTGCCAGTCCCCAACCTGGATGGTGCCCTGCCCTCATGA  2809

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2810  AGAGCCCCCCGGATGTTCACCTCTGCCCAGAGACCCGGCCTGCCCAGGAAGAGCAGTCTCTGCTCTTGTGTGGG  2883

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2884  TCCCTCTGCCCCCACCCTGCCCAGGGCTCCCCAGCAGCCTGAGGCCCCTAAGGAAGAACAGCCCTCAATGGTGA  2957

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2958  TTCTATTGGTGTTATGAGTTGTGTCCCCAAAGAGATATATCAGTGTCCTGACCCACAGTACCTCAGAATGTGAC  3031

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3032  TGCATTTGGAGATAGGGTTCTTCCAGGGGTAACCAAGGTAGAATGAGGTCGTTAGTGTGGGCCCTAATCCAATA  3105

Query  220  ----------------------------------------------------------------  219
                                                                            
Sbjct 3106  TGACGGCTATCCTTATAAAAAGAGGAACATTTAGGCTGGATACAGTGGCTCATGCCTATAATCC  3169

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.