Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
NR_146580.1
Aligned Length:
4988
Identities:
190
Gaps:
4771

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTTCCGCCCGCCTCTTCAACGCGCACGCTGCTACCGAGCTGCAGGAGGCCGCGGGCGCGAGACTGGGAATGCGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGGGCCCCCGCCTGGCTCTACAAGCCCGGGCCGCGGCCCCCGCCTTCCCCGCCGCCTCCCGGCGCTCCGTGCCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCCCCACGAGGCCGGCGGCTGCTGCTACCTGGGGCCGTTGCTGCTTGTGCCGTGAGCGACGGCCAGCCATTGTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCCGCCGCTCCGTCAGCCGCGCCCGGCCGCGCGCGCACCGGAAGGCGCATTGGCGTCTTGCGGGCTCCGGGCCG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGTGGGCAGGATGGCCTCCACAAGCCGCATGGCGCGCATGGGGAGCCTCCGTTGATGCCGCCGCGCCGCCCTCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GAGGCTGCATCCGCGGAAGCCCGGCTCCCCGAGCGCTCCGGCCCGGCCCGGCGCCCCGGACCTGAGTGCGTCCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CATGAAGGCGCCCGGGCTGGCCCAGGCGGCCGTGGCAGAGGAGACCCCGGACTGGGCGCCCGAGCTCTGCCCCA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCCCCGAGTCGCGGTCGCCGGAGCCGCCTGCCAACCGCCTTCAAGACTTCGACACGCTGGTCACCGTGGGAAAG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CAACTAGAAGCCATTTGTGTCAAGGTAACGTCTGGAGAAACAAAAGGTCAGGAACGGCCAACGTCCCTACTGGC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CACAGTCTAGCCCCAATCTGCAAGACAGAGCCAGCCGCCCCGGGGGAATTCCCGCCTGGTGGGACTCCACGTCA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CCAGCCCCCAGCTGCTCAGGGTACAGCCCCTCGTGAGAACCGAGCCACAGTCATGTTTCCTACATCAGCCTCCT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCTCAGGGGTTTGTACAGAGACCACTGCCAGCCCTCTAGGTGGTCCCTGCAAAGAAAGTCCCAGCTCCCAAGGC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCCAAATGGACAGGGCACCATGTTGACCCCTTCGTTGGCCTCCAGTTCGCCGACTGTAACATGTTTCATCCAGT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TCAGGACGTTTATTTATTTCCAACTTGCATACAAAACATACTGAGAAACTAAAACCATCGTTAAAAGTGAAGAC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ACGTTGAGACAGGTATCTCGACCTGCCAAGTATACAGCTAAAGCTGAGTTCATAAAAAGGGATGATTTGGCCGA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CGGTCATCTGCCAGATTCTGATGATGATTCAGAAGTCAGTGTGGAAGAAGATCAGAGGGAGAGGCAGGCGCTCT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TTGACTTATCAAGCTGCTCCCTGAGGCCCAAAAGCTTCAAGTGTCAGACTTGTAAAAAGTCATATATAGGGAAG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TGGGGACTGGCCCAGCATTTTAAACTTAATCCAGGCCATGGCCAGCTGGACCCTGAGATGGTGCTATCTGAGAA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGCCAATGGGAGCACCCTCCGGGGGTGCACAGAGGAAAGGACGCTCAGCCTGACCTTCCCGAGGCTGTCCGTGC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CAGCGGCTCCGCGTGAGGGAGGGGCCCGCTCCTGCTTGGTGAGAGAGTCAGCACGCGGTGGCCTGGTCTCACTC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TGTCGCCCAGGCTGGAGTACAGTGGAGCAGTCTGAGTTCACTACAACCTCCACCTCCCAGGTTCAAGTGATTCT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CCTGCCTCAACCTCCCGAGTAGCTGGGACTACAGTCACGTACCACCAGTTGAAAAAGATCATCTAGCAAAGCCT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TTTTTCCCAGCTACATATAAGGAATTTGAAAGTCGCATAAAATGGTTAAGAAAATGTGCCAAGATTACCTCAGT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AATTCTGGTCTGTGTTCTCAGGAGACCCTGGAAATAAACAATGTGTCTTCTGTGGCTTCAGCGTCACCTAGTGC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AGGCTGCCATTCAACAAACGCATTGTCAACAGTCAACCAAAAGAAACCCATTGGCCACCATACCCTGAGGACTA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  ACCCTGACACAGATGCCCTTCCAGATGCCCTCAGTAGTCTAACTGATTCCATCGCCCCAGCCTTGGGGGAGAAG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CACTGCTGCCTATGCACTCCATTTACAGGTGAACTGTCACCCCTACAACTCAGCTTGCAACCAGCCCTGGCCAC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CACCAGTTTCCCCACACTGAGCTGAATATTGGACATGCCCATCTTAGACATTCCAGCCCATTCTGAAATTCCAC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ATCGATTCACCCGACAAAGTCTGAAGTTCCAGGGCAATTTATCTGGAAAAGCTCACCTGGAATCATGTGTCATT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TCAACCAACAACTGTTGAAGAGGACGTGGCATCAAAACCAAGTATTGGAGACCAGGAATCTGAGATCAAGGTGT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GGGCAGGGGTGCGCTCCCCCTGGAGGTTCTAGGAGAGGATCCTTCCTGCCTCTTCCAGCTCCTGGTGGCTCCAG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GTGTCCCTGGGCTTGTGGCCACATCACTACATTCTCTGCCTCCATCTCCACGTGACCTTTTCCTCTGTGTCTGT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GTCTCCTCTTCTGTCTCTTAGAAGGACACTGGTCATTGGATTTAAAGGCCACCTGGGTAATTTATAGTGATCTA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  ATCTCAAGAATCTTTCCTTAATTACATGCAAATACTCTTTATCCAAATTAGTTTGCATTCACAAATTCTGGAGC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TTAGTACTTGGACATATATTTTGGGGGGTTGATGGTTGGAGGGGCTTTTATTCAACTCAGTACATCTTAATAAG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GAATTAATGCCCCCCAACTTGCCTTACAAGTCATATATTAAAAACAATGTTGGCCTGGCACAGTGGCTCATGCC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  CGTAATCTCAACACTTTGGGAAGCCAAGGGAGGAGGATCACTTGAGCCCAGGAGTTGGAGACCAGCCTGGATAA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  CAAAGGGAGACCCAGTTTCTACAAAATATTTAAAAATTAGCCAGGCATGATGGTGCATGCCTGTGGTCCTAGCT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ATTCAGGAAACTGAGGTGGGAGGATCACTTGAGCCTGGAAGTTCAAGACAGCAGTGAGCTATGCTCACACCACT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GCACTCCATCCTGGGCAACAGAGCTGGACTCTGTCTCAAAAAACATAACACTAAAACATCAAAATTAAAAAAAA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  AAAAACAATGAAAGTAGCCTCCACTTACAAACTAATTACTCTTTCTTGAAAATATTACACTTTTTTTCTTCTAT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  ATCTCTACTCCTAGCTCTCAACACCTTTCTTAAGCCCACATCATAACCTGTCTTGCATAACTTTGTGAGTGCCC  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  AACGTTTCACTGTACAAGATTGTAGAGCTGCATGCTTCTTAAGAATAAATCCACACTTTAGGTACCAGTAAATC  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  CATGCAATGCCTCAGACGTTATAACCAAATAATGCCTGGAAAATCGACATGAATTTATGTGAAGCATAAGCCTT  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  TAATTTTTTTAAAGAAAAGTAGATTGCTGTTTTTCCACATCATTTCAGAGCCGTTCTCTAGTTTTGCATGCCCT  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  TTACTGCAGAACCATACAGATTTTGTTCTCCATTTCATACATCATTTGTTGAAATGCCCTTTAAAATGTAACGG  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  AATATAGAGCTTTATGGGAAAAAATGCTGTAGAAAATAAATTATCTTCTCTCTTTGTATTGGGAACCAAAAGGT  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  CTCACCTTATTAATGACCACAGAGACTCTCCTAAAGCAATTCTGGAAGTCAAAACAGCTGGAGTCTAGTTTAAT  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  GGGAACCCTCATTAATTAGACAAGAACACCAAGGCTATGACCACAGCAGCTGGTAGCAGCAGCCCTGCAGTGAA  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  GTAGACTCTCAGAGGACACAAGGAAAGAGTGTATTGATAAGAAATCTACAGCAAAGGTGTAGCACATCATCATT  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  TGATCTTGATACACTTGACTGTGGGCAAAGTACCTGTTATGTAAAACATGCTTTGTTAGTTAGGGCCATGATAA  3774

Query    1  ----------------------------------------------------------------------ATGG  4
                                                                                  |..|
Sbjct 3775  GCTGCTTAAGCTGATGAATGAACACCAAATCTCAGTGTTTTTTTTTTTTTTTTTGGTTTTTTTTTTTGAGACAG  3848

Query    5  AGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGG-T  77
            |||||||.||||||||||||.||||||||.|||||..|||||||.|||||||||||.|||.||||| |.||| |
Sbjct 3849  AGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGGGTGATCTCAGCTCACTGCAAGCTCCGCCTC-CCAGGTT  3921

Query   78  CAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTT  151
            ||.||.|||||||||||||.||||||.||||||||||||.|||||||.|.|||.|||||||||.||||| ||||
Sbjct 3922  CACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCCAGCTAA-TTTT  3994

Query  152  TTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG------  219
            |||||||||||||||||||.|.||||||||||||||.||||||.|||||||.|.||||||||||||.|      
Sbjct 3995  TTTGTATTTTTAGTAGAGACGAGGTTTCACCATGTTAGCCAGGATGGTCTCAATCTCCTGACCTCATGATCCGC  4068

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4069  CCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCAGCCCGTATTTTTTTTTCTAACA  4142

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4143  AATACCTGGTGTTAAGCCCAAAGTGTGTGTTTCTGGTTGGCTGGTGATGCTCTTTCAAGTCCTGAATCAGGGAC  4216

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4217  CCAATAACTTTCAACATTGTGGCTCAGCTCTCTTCAACAGCTGCCTCCAAGTTCTCTTGAGATATTGGTATTTA  4290

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4291  TCAGAGGAGAGGGGATGGAGAAGGTATATGCCTTTGCTAGAGCTGCCATAACAAAGGACTGTAGACTGAGGGGC  4364

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4365  TTAAACAACAGAAATTTATTTCCTTACAATCCTGGAGGTCGGAAGTCTGAGATCAAGGTGTGGGCAGGGCTGGT  4438

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4439  TCCTCCTGAGGCCTCTCTCCTTGGCTTGTAGACTCTGTGTTCTCCCTTTGTCCTCATACAGTCGTCTCTCTGTG  4512

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4513  TGTGTCTGTGTCCTCATCTCTTCTTATGAGGTGTCTTAGTCCATTTCAAGCTGCTATAACAGAACACCATAGAC  4586

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4587  TGCAGGGCTTAAACAACAGACATTTATTCTCCCATTGTCTTGGAGGCTATCTATCTACCTATGTAGCATCTATC  4660

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4661  TACCCATCTATCTATCATCTGTGTATAATCTACCTATTATCTATCTATCTACTTATCATCTACTTATCATCTAC  4734

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4735  CTATCATCTGTCTATTTTTCTGTCTATCATCTATCTACCATCTATGTATCTACCTATCATCTAGCCATCTGTCA  4808

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4809  TCTATCATCTATCACCTATCATCTATCTGTCTCACCTATCATTTATCTATGTATTTGTGTATCATCATCACCCA  4882

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4883  GCTATGAACTATCTATCATGTATGATGTATCTATCATCTATGTATCTACCTATCTGTTATTTTGGTCAAATATA  4956

Query  220  ------------------------------  219
                                          
Sbjct 4957  CATAATATAAAACTCACCATTTTAACCATT  4986

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