Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- NR_146912.1
- Aligned Length:
- 6738
- Identities:
- 189
- Gaps:
- 6522
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTCATTTTCTCTTGCTGCCGCCATGATTCTGAGGCCTCCCCAGCCATGTGGAACTGCAATACTTTAAAGACACA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAGTCTCAACAACCATCTTCCGCTTGACGAGACAGATCATTCTAATTTGAGCAGAAGCTACTATGTCCTGCCCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTGAACGCGGCGGCCCGGACAGCTGACAAGGACACACTGTGTATTTCCATTCCAATTCTGGGAGTGCTCTGAGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTCTGGGGGAGAAGGACCCATGAAATATTCAAAACATAAGTGAATAAAATATCTAGGTGCTAGATATGGGCCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGAAGAGCCCTCGGCCCTGCAAAGTGTGTGTGATGGTGAGAAGCTACCGGAAGAGATGGTCCCTGTGCTTGGTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CATTCCTTGGACATTTATCAAGCTGACGAATGTAGCAGAGGTGCTTCAGTCGGCTGTAATTCCACGGGTGGAGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCTGGCTGGAGAGTTACCTGGGGCTGTCACACTGCATGGGCTCCGGGACACTGTGGCTGCCCTTATGTGGTGTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCCGGAGGGCCCTGCAGGTGTCACACCGCTGCTCCACACTGCCACCTGCTGTCAGCATCTGTGCAACGTATCCA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGTCTCTGGGGGCTAGAATGAAAAACATGCATCTCGTAACCAATGAAATCGGGCTTGTCCTGAAGACCTCGTGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATTCATCCATTCTCACACTGCTATAAAGACATACCTAAGACTGGGCACTTCATGAAGAAAAGAGGTTTAATTGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTCACGGTTCTGCAGGCTTTACAGGAAGCATAGCAGCTTCCACTTCTAGGGAGGCCTCAGGAAACTTATAGTCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGGTGGAAGGTGAAGGCGGGACAAGGCGTCTCACATGGGAGCAGTAGAGAGAGAAAAAGAGGGGGTGCCGCACA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTTTGAAACAACCAGATCTAACGATAACTCACTATCATGAGAACAGCACCAAGAAGCTGGCGCTAACCCACTTG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGAAGGACCACCACCATGATCCAATCCCTTCCCACCAGGTCCCACTTCCAACGTTGGGGATTACACTTCACGGT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GAGATTTGTGCAGAGAGGACACAGGTCCAAACCATATCACCTGCTGTCTTTTTATTTATTTATTTATTTATTTA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTTATTGAGACAGAGTTGCTTCGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCCGC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTCCCGGGTTCGCACCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACAACAGGCGCCTGCCACCACACCCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCCATCTCCTGACCTCG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGATCCGCCCGCCTCGGCCTTCCAAAGTGCTGGGATTACAGACATGAGCCACTGCGCCTGGCCTATTGATTTAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTTTGAGATGGGGTTTCGCTCTTGTGGCCCAGGCTGGAGTGCAATGGCACGATCTCGGCTCACTGCAACCTCCG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CCTCCCAAGTTCAAGTGATTCTCCTGTCTCAGTCTCCCAAGTAGCTGGGATTACAGGCATGCGCCACCATGCCC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AGCTAATTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGTTCAGGCTGGTCTCGAGCTCCCGACCTTAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCTTGCCCACCTGCTGT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CTTTTTGCATCTTCCAAGTAGACATCAAAGATTGGTTTGCTATCAGTGTCACTTCTATAATCCGTGGTTCTATA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGAAGAAAACAAAATCCCAATTGGGGAAAATGAACCCATGGCATTTTGTTTCTTACTCTGGAGCCGTTTCTGGC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGTTTGCCAGCAAGCACACAGACCCACAGGACAAGCTTGGTTCATGGCCTGGAGTGCTGGTCTTGCTCATGGAC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ACGCAATCAGAAGCAGTATTTTGATACCCCTGTGCTCATGGCAAGGAGCTGCGTGGGCTTTCAGGGTGGAACCA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GGGCTTCAGGGAACCCCTTCATCCCGACAGGCATCACCCAGAGCACACCCAGAGCAGCCTGCAGCGGCGTGGAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GGGGCTTGCACTGGCCCCAAGGTGCAGGGGAGCCCTGCCTGCCTGTCTCCTGCTAGGCTTGCCTGGGCTCCCGC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CTACAGACCATGAGAATTCTTCTAGCATGGGAAGAGAGTCTGACCAAAGTGACAACAGCCATCCCCTGACTGCC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CAGCACTGTTCACTTCTTCCCAGATACTCCTACCAGACCAGGTCAGCCCTTCTTTTACTGGGGGGCCAGAAAGG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TCCCCCCAATCCAGTCCAGGACTCCAGATGATGCCCATTTCTCTGCCAGTCCCAGCAATCTCCCTTCTCAGCAT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTGGCATCCTGGGATGTACCCTAAAGTTCACTGGCTCAGAGCACCCTAACTATGGCTGCGGCGAGGGGGGAGGG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CGGGATCAGGTCGGCGTGCTGCACATGGGTCCTGGGGCGGGAACAGTATTCTGGCTATGCTCCTGCAGCTGGGC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CCTCACAAGGGGCAGCGTCTGCACCCTCTCAAGGCTTTGCAGATAAGGGTTTATTGAAGAGGGAGGTGACCCAC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ACCATCCCCACTGAGGGATCTGGTTAGGGGGCTCCCCCCAGAATGTAGGCAAGAGGGCAGCATCTTGATAGTGA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GGGTTGGTCACCCGGGAACCACAGTAACGTCTGCAGGGACCTTCCCCCAGTGGCACGCACTTCCCAGAATGCTC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 ACGGTCACCCTCAGCTTTCAACTGTGGGGACCTAACGCGTCTCCTGGTAGAGTCCTCACTCCCTTGGCTAAAAC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TTCTGAAAGCAGCGAGGCCGGGCTCCCTGGCTAGGATGGCTCTGGCCCTGAGCAGGTCATTTGCGTCAAGTTTC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ACCACCCAGCACCCTGTGCTTTCCCCAGCTGGCTGCACGCTGGGCCTCCGGGAAGCCGGCAAGCCCACCTGATT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CTGGATCCTCCCTCCGAGCCTGGGTGACGCTGTCATGAAAGAAGCTGCCAGAAGCCCACAGCAGGGCAGTTAGG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CAGGGAATGCGAGTCCGTGTCCAGAGCAAGGGTGACTCCAGTCCCTCCAGGACGGAGAAGCCAGTGCGACCCAC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TGTCCCAGGCCCCCATGGCCCTGGCTGCTCCTGGCGGACAGAGGGGCATGTTGCCCACGCTATGCCTTGTTCCC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TCTGGGCTGCCATGGCCCCTGGAACAATTCCTGGGACAGCCTGGGGAGGAGGCTGACAATCATGCAAGGTGGAT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GCAGCTTGGCCCCTCCCAGTCACCTATGTGTTCCTTCCTCAGACTCCCGTGGGGCTGGAGTCATGATTTTGCTC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CCCATCCCATCTGTAGGCCGCCCCTGCCTGGATGAGACCACGCTGACACTCACACGCCTCCCTCCAGGAGGACC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TTGCCTCCACTTTCTCCAGGGCCACCTGTGATGCACCAGGATCCATCCTGTAATCCCAGCTACTTGGGAGGCTG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AGGCAGGAGAATCACTTGAACCTGGGAGGCGAGAGGCAGAGGTTGCAGTAATAAGCCAAGATTGGACCACAGCA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CTCCAGCCTTAGCAATAGAGAGAGACTTCGTTTCAAAAAAAAAAACCTATGCAAATCCCAATTACACACGCTGA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 GTGGCATGTTCAGCTGAGCCACCTGCCCAAGGCGGGACCCTCTCTTCCTCCGTCTGCAGGTCACATGGAGATGG 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 CAGAGCACCTGCACGTGCACCTGGAGACCCTCTCAAGCCTCGTCTCCTGGCACTGCCTCCTCCTGACATTGGAG 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GCTGCTGGGAGTACCAGCCTGTAACCCTCGTTGTGATGGCACCTGCCTGGTGCTATAATTCAGACATTTGTCTC 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 CCCAACCTCATGTTGAAATTTGAACCCCAATGTTGGAGGTGGGACCTGACAGAAGGTGCCTAGGACATGAGAGC 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TTGGTGCTGTCCTCGCGGTCATGAATGCATTCATGCTTTATTCCTTCTCACAAGAACTGATTGTTAAAAACGCT 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 TGGCACCTCCTCTGCCCACTCTCTCTTGCTCCCTCTCTCACCATATGGTCTGCATGCACCTGCTCCCATCGCCT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TCTGCCATGAGTGGACACTTCCTGAGGCCTCACCAGAAGCAGATGCTGGCACCATGCTTCTTGTACAGCCTGCA 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 GAACTGTGTGCCAAATAAACCTCTTTTCTTTATAAATCACCCAACCTCCCAACACAAATCGTCCAAGACACCTG 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 GTGTCCCCCAAACAGCTCCTTGGTCAACCTCAGATTCAGGACCAATCTGAGAGCTGTTTCCGTGAAGGGAGGAG 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 AGGAGAGTTGTTAGCTGAAGAGGACATGGGTTTGCTCAAGATCCCTGCATTCTCCACTATGGCTCTCTGATTCT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 CCTCTCTGAGCTTGTGGCAGACACGGCAGATACCTCAAGCATGGCTGGGCAGCAGATGCTGGCTGAGAGGAAGT 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 GGCTGAGCCCAACTTGTCCCTCCTCAGACCCCAGAATTGCCAAGACCAGAGTCCTCCATAAAGACCTCACAAAC 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 AGGCAATCACTGCATGCTTTTCCACAATTAAATATGTGCACATCTTAAGGAAAGGACCTAACATCCTTCAGCAG 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 TATCTCTTTCCAGGGCAGGGAGTGACTGCGTCAGCAGCCTCAAGTACCTGGAAACTGTCCACATCAGGCAAAGT 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 GGTGGGAGAGACACAGATGTTTCCACCAGCATTTAAAAGAAAGGAAAGAAAATTATTGACAAGAAGCCTCCATG 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 GTGGATCAGGCTTCAACGTTTTGATGGACCTGGCCTCTCTTGGAAGCAAATCCCTGGATGGAGCCCATGTCTCT 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 TTGGGCCCCCAAAGGCAGCCTGACCTTGACACGGAGTGCAAAGCAGACTCAGCTGCTTGTGTTTAATGGGGATT 4884
Query 1 ----------------------------------------------------------ATGGAGTCTCATTCTG 16
|||||||||...|.||
Sbjct 4885 CGCATAGTTGGTTTTTGGTTTTGTTTTTGTTTTGTTTTGTTTTTTGTTTTTTTTTGAGATGGAGTCTTGCTGTG 4958
Query 17 TCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCA----CTGCAACCTCTGCCTCTCGAGGTCAAGCGATT 86
|.|||.||.|||||.||.|||.||.|||||||.||||| ||||||||||||||||.|.||.|||||.||||
Sbjct 4959 TTGCCTAGGCTGGAATGCAGTAGCGTGATCTCTGCTCACTGCCTGCAACCTCTGCCTCCCCAGTTCAAGTGATT 5032
Query 87 CTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTT 160
|||.|||.||.||||||.|||||||||||||.||||||||..||.|||||||||.||||| |||||||||||
Sbjct 5033 CTCTTGCTTCAGCCTCCCGAGTAGCTGGGATCACAGGCACGTGCCACCATGCCCTGCTAA---TTTTTGTATTT 5103
Query 161 TTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG--------------- 219
|||||.|||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 5104 TTAGTGGAGATGGGGTTTCACCATGTTGGCCAGGCAGGTCTCGAACTCCTGACCTCAAGTGATCCTCCCACCGC 5177
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5178 AGCCTCGAACAATGCTGGGAAAACAGGCGTGAGCCACTGTACCCAGCTGGGATTTGTGTAGTTTTGTCCGTGCT 5251
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5252 GTTATATGGTGCACTGGGCAGAGCCAGCCAGTCCCGCCTCGAGCCCCGTTACTTTGGTCTCTGATGCAGATGTT 5325
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5326 GTGTGGCAGTGGAACGGCCTCATCAGCCCCACCTGGGACCTGGCAGGGGATGGGTCTGAGCAGCCCTAGAGGAG 5399
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5400 GGTCCCCAGGGCCCACAGCAAGGGTGACATGACCCACACCATCCCCACTGATGGGACCCACACAGTGAACCTCC 5473
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5474 TCCCACACCCCCTCCCCAGCCGGCCACTTGGACCAGAGAGACGTTATCAAAGTGCCCTCTCAGAAACGTCGCCT 5547
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5548 TCATCCACCATCCTCTTTTAACCCACTGGGCTTGGTCAGGAAGCCGTTGGTCAGCAGGGGGCAGGTGGGGTTGG 5621
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5622 GGGGCACCCTTATGTCCTGTGAGACCCTAGCAGGCACTCCAGCTTGGGATTTCCAGAGGCTCTGAGGTGGCTAA 5695
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5696 GAACAGGATGACAAATCGACTCCAAGGTTCAACTCTTCCCCTCATGGACACTCCTCCCTATGCTGTTCTCATCT 5769
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5770 CAAATTTTACCTGTTTTTCTCAAAGTAGCTCACCAGAGGTTGGAAATGAGATCAAAGGTCAGCGTGGATCTCAA 5843
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5844 CATTATTATTCATCAGGGAAATGCAAATCACACCAGAGATGAGACGCCATGACACTCACACTAGCAGGGCTAAA 5917
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5918 ATTTAAAAGTCTAGCTGGGGCTGGGCATGGTGGCTCATGCCTGTGATCCCAGCACTTTAGGAGGCCAAGGCAGG 5991
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5992 AGGATTGCTTGAAGCCCAGGAGCTCAAGACCAGCCCCGGCACCAAAGCAAAACTGTACCTCTACAAGAATTTTT 6065
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6066 TTTTTAATTGGCTAGATGTGGTACACATGCCTGTGGTCACAGCTACTTGGGAGGCTGAGGAGGGAGGATCACTT 6139
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6140 GAGTCCACGAGTTCGAGGCTTGGTGAACTGTGATCATGCCACTGCACTCCAGTCTGGGCAACAGAGTGGGACCT 6213
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6214 CATCTCTTAAAAATAAAGAAAAGGAAAGGAGTGGAAAGGAGAGGAGAGGAAGAAACTTGATATTTCAATTATTT 6287
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6288 TAAATTTGTTGAGACTTGTTTTGTGGCCTAACATATGGTCTATCCTGGAGAATGTTCCATGTGCTGAGGAAAAG 6361
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6362 AATGTATATTCTGTACAGCTGTTGGATGGAATGGTCTGTAAATGTCTGTTAGGTCCATTTGGTCTAAACCATAG 6435
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6436 TTTAAATCCAATGCTTATTTGTTAATTTTCTATCTGATGATATGTTGAAGGCTGACAGTGTGATGTTGAAGACC 6509
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6510 CCAACTGTTACTATATTAGAGTCTCTCTCTTTAGATCTAATAATATTCACTTTATATATCTGGATGATTTGGTG 6583
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6584 TTGGGTGCATATATATTTACAATTGTTATATCTTCTTGCTGAGTCAGTCCCTTTATCGTTATATAATGACCTTC 6657
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6658 ATCTCTTTGTAGTTTTTGACTTAAAGTCTGTTTTATCTGATAGAAATATAGCTACTATCGCTCAAAAAAAAAAA 6731
Query 220 ---- 219
Sbjct 6732 AAAA 6735
