Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- NR_148048.2
- Aligned Length:
- 6851
- Identities:
- 195
- Gaps:
- 6636
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGGAGAGATGCGAAATCAGCGGTAGCAGGTGGCGCAGAAGGGAGAGGGGAGCGACCCTGGGGACCGACTCTGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GACCCTCGCCGAAGAGAAAATAACTCTAAAATCTGGACATGATATACAAAGTGACTGCCTAAAGGAGCTGAAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAGGACATAAGTGGATCGCCTCTGCTGTTGCATGTTGGCTTGGAGAACAGAAGATGAGGAGCCAAATAAGCAAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCCTTCAGCCCCAGGCTTCTAGCACGGGGCTGCATGTAGGCTATGCATTCTGGGGAGTGAGGAGATCATGAATG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTGAAAATAAATGAAGGAATCCAGAAAAGCAAGAGTCAAAGAAGGCATCTGCAGGCCAAATCTCTGATCAACCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTGACCCACATACACACAAAATACACTCAAAGCAGCTCAGCTAAAGACAAAGATCTGCACTCAGAGTAGAGCTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCTCCCCAGAAACAGAGCTCGCAGTTCAGGCCCAGCAAGAAAATTACCTGCAAAACAAAGGAAAAACAACACTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATCAGAGAAAAAGAACAGAATCTGGAATCTTCACAACCTAGCATTCATCATATCCAAGATTGAAACCCAAATTA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGGGACATATTTAAAAACCAGGAAAATGGAACGTAGTCTTAAGAGAAAAGTCAATCAAATCTGACCTGGAGATG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AATAATATATTGAAACTTAAAAGGCAAGGGTTTTAATTTTTGTTTTCTTGTTTTTTTTCTGTTTGTTTGTTTGT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTTTGTTTTTGTTTTTTGAGATGGAATCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTGCAGCCTCTGCCTCCTGGGTTCAAGGAATTCTCCTGTCTCAGCCTTCCGAGTAGCTGGGACTACAGGCGCAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GCCACCACACCCAGCTAATTTTTGTGTTTTTAGTAGAGACAGGGTTTCACCATATTGGTCAGGCTGGTCTTAAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGCATTACAGGCATGAGCCACCGCACCCA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCCTTGTTTTCTGGGGTTTTGTTGAGATGAGGTCTCACTCTGTCACACAGGCTGGAGTGTAGTGGTGCGATCCC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGCTCACTGCAGCTTTAAACTCCTGGGCTCAAGCAATCCTTTTGCCTCAGCTAGCATGCTCAGTTAATTTTTAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ATATTTTTTGTAGACATGGGGTCTTGCTATGTTGCCTAGGCTGGTCTTAAACTCCTGGCTTCAAGCAATCCTTC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CACCTTGGCCTCCCAAAGTGGTAGGATTATAGGTGTAAGCTCTCCTGCCCAGCCGGCAAGGGCTTGAAAGTGTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ATGTTATTTTATAGTTTTAGGAGGTTTTGTAGCTCTCTATGATGAAGTTTAAAAATTAAGAAAAAAAGCTTGTT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTTGATTAATCGAAATCTCAGCACAGAAATGGGACATTTCATCAGAGAAATAGATACAATGAAGAAGAGCCAAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TGGAAAGCCCCCTTTTTTGGTTGCTCTTTTTCTGCTTTCAAGGTTTATATTAGCTTGACTTAGATGTGCCTTGG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AGTGGACTTCGTTATGTCCCTTCTGCTTAGTGTTTGTCTAATATCTTGAATCTGCAAATCTCTGACTTTCATTA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAGCTGGGAAGTGTTTGGTTATTATTTCTTTAAATATTTTTTCTACTTGAGTTTCTTCTCTCCCTCTGAGATTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAATTACATGTATGTTTGTTTGATATCATCTAACAAGTCTCTGAGATTTTGTTCATTATGTTCTAAGTCTTTTT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CCACTCTGTTACTCATTTTGAGTAATTTTGATTGATCTGTCTTAAAATTTACTCTTTCCTTTAACATGTCCACT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGGCTGTTAACTCCATCTGGTGAATTTTCTACTTAAGAAATTATACTTTTCAGCTGTAGAATTTACATGAAGAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GTACATTATCAACTGTAAATGGGCCATGAAAAGTTAAGGTTGAATTTTGTAATTTATAAATCAACTATTAAACA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GTGCAGAATAGCTGTAAAGCATCAGGAAAATTAAAATAGAATATATCTTAAAATATTAAGTAATTTTTAAAGGC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GGGAAATAAGAAATGAAGAAACAAATGTCAGAGGAGACAAATAGAAAACAAAATAAAACAAAAATGATAGACTC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ATACCCAACCATTTCAAAAATTACATTGAACATTTATGAGCTAAACACTCCAATTAAAAGACAGAGATTAATAA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TTGTTTTTAAATGGATACAAAAACAATTATAACATCTCACCAAAGAAGATACACAGATGCCAAAAAATTTGAAA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGCTGTTTAATAGTATATGTTATTAGGTAATTACAAATTAAAACAACAATGAGATACCACTACACATCTACTAG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AATAGCCAAAATTCAAAATGCTAACAACACCAAATGCTGGTAAGGATGTGGAACAACAGAAACTGTCATTCATT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GTTGATGGGAATGCAAAATGGTTTGGCCACTTTGAAAGACAGTTTTGACAGTTTCTTGCAAAACGAAACATACT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTTACCATATGATTCAACAATCTTACTCCTGGGTATTTACCCAAATGAGCTGAAAACTTATGTCCACACAAAAC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CCTGCACATGGATGTTTATAGCAACTTTATTCATAATTGCCAAAAGCTGGAAGCAATCAAGATGTCCTTCAGTA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GGCAAATGGATAAACCGTGATATATCCAGACAATGGAATATTATTCAGTGTTAAAAAGAAATGAGCTGTCAAGC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CATGAAGACATGGAGGAATGTTAAATGCATATTACTAACTGAAAAAAGCCAATTTGAAAGGGCTGTGTACTGGA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TGGGTCAAACTATACGACATTCTGGAAAAGGCAAAACCATGGAGACAAAAAGATCAGTAGTTGCCAAGGGTTGG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GCAGAGGCAAGGATGAATAGATGAAACATAGAAGATTTTTAAAGGAGTGTAACTATTCTATATGATACTGTCAT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GGTGGCTATATGTACATAAATACATTAGACATTTGTCAAAACTCATAGAATGTATAATACCAAGAGCAAACTCT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 AATGTAAACTACGGACTTTGGATAATAATGATACATCAGTGTAGGTTCATTGATTGTAGCAAATGCACCACTCT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GGTATGGGATGTTGATAGTGGGGAGGCCATATGTGTAGGGGTAGGGGGTGTGTGGGAACTGTCTGTACTTTCAT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CTCAATTTAGCTGTGAATCTAAAACTGCTCTAAAAAAATAAAATCCATTTTTTAAAAACCTAAATATAAACTAT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GTGCAAAGACATACTTTCAATATAAAGACAGAAGGAAACCAAATATAGATGGATAGAAAAAGATATATCATGTA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 AATAGTAAGCACAAGAAAGCTGGAGTGGCTACATTAGTATCAAATAAAAATAGATTTCTAAAAAAAAGTATCAT 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AAAAGATAAAGAAGGGCACTTTAGAAGAAGAAAAGGAATAATTGATCAAGATGACATAAAATTTACAAATTTAT 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TTGTGCCTAATAATAGTCTCAAATTACATAAGGCAAAAACTGATAGAATGAAAGGAAGAAATAGGCAATTATAA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 TTGGAAATTTTAATGTCTCTCAGAAGTTGATAGAGTAACCAACAAAAAATCAGCAGACAGAAAACCTGAACAAC 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 ATTATCAGTCACTTTGACCTAATTAATATTTTTAGAACATTTCACTCAGCAATAGCAAAATGCACATTCTTTTC 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 AAGTGCACATGGAATGCTTACCAAGATAGACCACATTCTGGACCATAAAAAAGTTTTAATAAATATTAAAAAGG 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TTGAAATCAAATAGTTTGTTCTCTGACCACAATGAAATTAAATTGGAAACCAAAAACAATAAGATAACTAGGAA 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 AACCCCAAGCATTTGGAAACTAAGCAACACACTTCTAAATATTTATTGGGCTAAAGACTAAATCACAAGAGAGA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TTGAAAATATTTTGCCCTGATGATAATATAAATACACATTTCAAAATTTGTGCAATGTAGCTAACATAGCACTT 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 TGAGGGAAATTTACAGTTTTGAAAGCCTATACGAAGTGGGGAAAGTTCTTAAATCAATGATCTTAATTTTCACT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 GTTAAAAAATAGAAAAAAAAGAGTAAATTGAACTCAAAGCAAGCAGAGGAAGAAAATAATAAAGATAATGACAG 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 ACATCAATGAATTAGAGAACGAAAAAAAGAGATAAAAAAATCATTAAAAGCAAAAAGCAGTCCTTTGAAAAAAC 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 TAATAAAATTGATAAATCTCAAGACTGACTGGCAAAGAAAAAAAAATGAACAATATCAAGAATGAGAGAAGGGA 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 CATTATTACTTTGGATATTAAAAGAATAACAATTCTCTATTGTTATGAACAACTTTATGACATTAAATGTGTCA 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 CAGATGAAATGAACACATTCTGGGAAATACATAAATTATAAATCTAATCAAAGATGAAATAGAAAGCTTGAACA 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 GCCCTGTATCAATTAAAGATATTGAATTTGTAATTAAAAACTTACTGAGAGAATTCTGGGTTTAGATGCTTCAT 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TGATGAATTCTGACAAACATTTATGAAAAAATAATACCAATCCTACAAAAACTGTTTAAGAAAATAAAGGAGGA 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 GGCATGATTTTATGATGCAGTATTATTCTAATTCTACAGCCAGATGAAGACATCTTAAGAAAAAAACTACAGTC 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 CAATATCCCTCATGAATATAAATGCAAAAATCCTCAACAAAATATTAGCAAGCCAAATCCAGCAGCATAAAAAA 4736
Query 1 ------------------------------------------------------------------------AT 2
||
Sbjct 4737 GGTTATACACTATGATCAAGGGGCAATGCAAAGTTTTTTTTTGTTTGTTTTGTTTTTTGGGTTTTTTTTGAGAT 4810
Query 3 GGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGG 76
|||||||||.||||||||||||.||||||||.|||||..|||||||.||||||||.|||||||||||| |.|||
Sbjct 4811 GGAGTCTCAGTCTGTCGCCCAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGTAACCTCTGCCTC-CCAGG 4883
Query 77 -TCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTT 149
||||||||||||||||||||.||||||.||||||||||||||||||||||.|.||||||.|||.||||||
Sbjct 4884 TTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACAACCACGCCTGGCTAA--- 4954
Query 150 TTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG---- 219
|||||||||||||||||||||..|||||||||||||||||.||.|||||||||||||.||||||||||.|
Sbjct 4955 TTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGTCAAGCTGGTCTCGAACGCCTGACCTCATGATCC 5028
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5029 ACCCACCTCAGTCTCCCATAGTGCTGGGATTACAGGTGTAAGCCACCGCGCCTGGCCAATGCAAAGTTGTTTTA 5102
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5103 ACAGCTGACAGTTAATCAATGTAATTCAACAAATTAATAGAATAAAGACAAAAACACAGACACAGTGGTGCAAT 5176
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5177 GTAGCTAACATAGTACTTAGAGGGAAATTTATCATTTTGAAAGCCTATAAGAAGGGGGTAAAAGGTCTTTTAGT 5250
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5251 CCTAGCCACTCAGGAGACTGAGGCAGGAGGTTTGTTGGAGACCAGGAGTTCAAGGCTATAGTGCACTATCATTG 5324
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5325 CACCTGTGAATAGCCACTGCATTCCAGCCTGGGCAACATAGCAAGATCCTGTCTCTTAAAGAAAAAAAGGAAGA 5398
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5399 AGGTGAAAACAATATGATCAGTTCAATAGGTGCAGCAATAGCATTTGTCAAAATTCAACTCCTTTTTATCATTA 5472
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5473 AAAAATCTTTCAGCAAATTAAGAATAAATTAAAACTTCCTCAACCTGATTAAGGGCATCTACAAAATCTGTCAG 5546
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5547 CTAACATCCTACTACAATGTGAAAAATCAATGCTTTCTACCTAAGACGAGGTAGAGGGCAAGGATGTTGGCTCT 5620
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5621 CATCATTTTTATTTAACTTAAATTGTATAGGAGTGCCTAGTCAGTGCAACAAAGCAAGGGAAAAATAAGGCATA 5694
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5695 CATGCTAGAAAGAAATAAGTAAAATTGTCCTTATCTACAAGTGACATTGTATAGAAAACCCTAAGAAACCCACA 5768
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5769 ATAAAAGCTATTAGAGGTACAAGGTTGCAGGATAAAATATACAAAAATCAATTCAAGGTTGCAGGATAAAATAT 5842
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5843 ACAAAAATCAATTCTGTCTCACATACTAGCAACTAACATTTAGAAAGTTAAGTTATAAGACACTTTGTTTACAA 5916
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5917 TAGCATAAAATACTTAGCAAAAGACATGTATGACCTGTAGGCTGAAAACAATAAAACATGACAGGAAGATCTGC 5990
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5991 ATAAATGAACAGCTATACCGTGTTCATGGATTCAAAGTCTCAATATTGTTAAGCTGGCAATCCTTTTTGAATTA 6064
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6065 TTCAATAAATTCAATGCAATTCCCACGAAAATCGTAACTTTTTTTTTGAAAAAAATTTGCAAGAGTATTTTAAA 6138
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6139 TTTTATATGGGAAGTCAAAGGACCTAGTATAGCCACATCGTTTTGAAAGAGGAGAACAATATTGGAACACTTCA 6212
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6213 GCTACCTGATTTCAAGAACAATATGTGGCTCTGAAGGAATGAACCAATTTTATTCTTTGATCTATAAATTGGCA 6286
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6287 TTTAAATAATTTCCAAATGAGGAGAGATGGGTAGCTCTGAGATAAGCATGTGACTTCCCAAGGTGGCCAATTTG 6360
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6361 AAGGGTAATTCTCCTTTGGGATGATTGCTAAGGGAAAAAAAAAATCCATGTTGAACATAAGGTTTGTAATCAAG 6434
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6435 ACAACTGGATTTAAATATTGGATGCACCATTCAGCTCTCTAAAACTGAGTATCTTCATCTTAAAATGGGATGTG 6508
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6509 CAGTGTAAGGATTAAGGCAGTAAAGTATAGAGGCTAAGCCGTGTGCTATAGCACTGGAGCTATCTTACCCAGGT 6582
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6583 TTGAATCTAGCTTGGCCATTTTCTAGCTATGTGGCCTTGGGTATGTTTAACCTTACTTTGCTTCATCTTGCTCA 6656
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6657 TTTGTACAAGCACTGCTCGTTTTATTGCATTTCACTTTATTGCACTTCACATATATTGCATTTCTTACAAATTG 6730
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6731 AAAGTTTTTGGCAACCTTGTGTGGGATAAGTCTATTGGTGCCATTTTTCTAACAGCATGTACTCACTTCATGTC 6804
Query 220 ------------------------------------------- 219
Sbjct 6805 TCTGTGTCAGCATTTTTTAGCAATAAAGTATTTTTTAAATCAA 6847
