Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- XR_001737164.2
- Aligned Length:
- 4848
- Identities:
- 191
- Gaps:
- 4633
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAAGGTGGATGCCGGAAGAGGCGTCGCCTGCGGGTCACCCAGAGGACACCCGGCGGGGAATTCCGAGGGTGGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGAGGAGAGGTAGGAGAGGCCACGGCAGAGGGAGGCCCCGCGCAGAGTGGGAACCATCGCCCGGTGCGGGCCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAACTTCCAGGGCCGGCTACTCCTCGGCAGAGCGACCGCGCGGTGTCTCAGAGCGCGGCCCGGAGCCGCACTAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGCGCTGGACGGCGGGAGAGAGGCTCGGAGGACCGGTAGCTCCCAGCAAAGCGGCCCAGCGGATGTCGGGAGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TATCTTCGGGCCCCTGGAGGGCCCGAGCTCCCTGGATGCCCCGAGCATCCACCCGCTGGTGTGCCCGCTGTGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACGTGCAGTACGAGCGCCCGTGTCTTCTGGACTGTTTCCACGACTTCTGTGCCGGCTGCCTGCGTGGCCGCGCG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACCGACGGCCGCCTCACCTGCCCGCTGTGCCAGACGTGGAGACCACGTACTTCTGCAACACGTGCGGACAGCCC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTATGCGCGCGCTGCCGCGACGAGACGCACCGAGCACGCATGTTCGCGCGCCACGACATCGTGGCCCTGGGTCA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCGAAGCCGCGACGTGCCCCAGAAGTGCACGCTGCACGCAGAGCCCTACCTCTTGTTCTCCACCGACAAGAAGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGCTGTTGTGCATCCGCTGCTTCCGCGACATGCAGAAGGAGAGCCGGGCACACTGCGTGGACCTGGAATCGGCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TACGTGCAGGGCTGCGAGCGGCTGGAGCAGGCGGTGCTGGCCGTGAAGGCCCTGCAGACGGCCACGCGGGAGGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CATCGCGCTGCTGCAGGCCATGGTGGAGGAGGTGCGGCACAGCGCCGCCGAGGAGGAGGACGCTATCCACGCCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TCTTCGGCAGCATGCAGGACAGGCTGGCAGAGAGGAAAGCGCTGCTGCTGCAGGCTGTGCAGAGCCAATACGAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GAGAAGGACAAGGCCTTCAAGGAGCAGCTCTCTCACTTGGCCACCTTGCTGCCCACCCTGCAGGTCCACCTGGT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CATCTGCTCCTCCTTCCTCAGCTTGGCCAACAAGGCTGAGTTCCTGGACCTGGGCTATGTGAGTCTCCTCTGCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCTGCAGATGCCCCCTCCCCACCAGGAGCCCACCCTGCAGACCAAAGCCACCAACTCAGGGGTGGGCAGCCTGT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CACCTGGAGCCTGGACCAGGGATCTCGGGGCTGACCCCCTCCCAACTCCATCATCTGCAAACCTGTTAGGGTCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTGTTACAAGGACAGTGAAGCCAGGAAGGGGGCATGAGCCTACAGTCCCCCGTGGGGCGGAGTGACCACTGGAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TCCAGCCGCCCCCTCTCCTGTGGATTTGGGGATGGGATGGGGGTTTGTCCGGGTGAGTCCCAGAAGAGGGCTGG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CGCTGCTAAGGGACACCAAGTCAAGTGCCAAAGACAGACGTGCTCCGCCTCCATCTCCCCTCTTCCTGCCCCCT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGCTGCCACACCTCCACCGGCCTGAGGCCCTCCTCACTGCCACAGGAGCTGATGGAGAGGCTGCAGGGCATCGT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CACGCGGCCGCACCACCTAAGGCCTATTCAGAGCAGCAAGATTGCCAGTGACCACCGAGCTGAATTCGCGCGCT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GTCTGGAGCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTGCAAGTGGTGCTAACACGCTGGCAGGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GGCTTAGGCCCCAAGGCGCTGACGGGGCCCCACTGCCCCTCCCCAGTAGGAAAGATGTCGGGGTCACCCGTCCA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AAAGCCCACGCTGCACCGGTCCATCAGCACCAAGGTGCTGCTGGCGGAGGGCGAGAACACGCCCTTCGCAGAGC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ACTGCCGCCACTATGAGGACTCCTACCGGCACCTGCAGGCAGAGATGCAGAGCCTAAAGGACCAGGTACAGGAG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CTGCACCGAGACCTCACCAAGCACCACTCGCTCATCAAGGCGGAGATCATGGGAGACGTCCTGCACAAGTCCCT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GCAACTGGACGTGCAGATCGCCTCGGAGCACGCCTCCTTAGAGGGCATGAGGGTCGTCTTCCAGGAGATTTGGG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AGGAAGCCTATCAGCGAGTGGCTAATGAGCAGGAGATTTATGAAGGTTCCAGACAGTTGGCTGCCGAGTGAACC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CTCTGTCCCTGAGCTAACCCACATACTAGCAGAGGAGGAAGTCAGAGTCGGCCACTAACCAGATGCAAATCCCC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ACACTCTTCCCCTTAGCGCTTGACCGTGCCTCCCAGCTGCTAACTGGCCTCAAATGATGCATGTGAGGTCAGGA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTCATTGAGTAGAATGCCCCCACCAAGTGCCTCCCTCTTTAATTAGAGGTCATCATGGAAATGGTCGGGATATT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TACGTGGTGCCTGGCTTGAGTAAAAATCTGAAGCCAGATGCTTCAGGATTAAGACCCCATGCTCTGGCCTTGGC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CCCACAGCCCAGCTCCATGACCTTCTCCAGCTGAGGCAGGAGAATGCCTACCTGACCACCATCACCAAGCAGAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CACGCCCTACGTCCGCTCCATTGCCAAGGTGAAGGAGCGGCTGGAGCCCAGGTCTTTGTTTGTTTGAGACAGTC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TCGCTCTGCCGCCCAGGCTGGAGTGCAATGGCGCCATCTCAGCTCTCACTGCAGCCTCCACCTCCCAGGTTCAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TCGATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGTTTCAGGCACCCGTGGATGAGCAGTCAGAGA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GTCTACAGAACACGCACGACGACAGCAGGAACAACGCGGCCTCAGCCAGGAATAATCCAGGAAGTGTCCCGGAA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AAGAGAGAGAAGACATCAGAGCCTAAAGGAAACAGCTGGGCTCCGAACGGCCTCTCAGAAGAGCCTCTACTGAA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AAATATGGATCATCACAGATCCAAACAGAAAAATGGGGGCGATGTCCCCACATGGAGGGAACACCCGACTTAGC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AAATGGGACCGGTCCCCAGGGTCAGGCTCTTAGAGCAGGCACAAGACTGGGACACTGGACAGAAGGTTGTTCCC 3034
Query 1 -------------------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATG 43
|||||||.||..|||||.||||||.||||||||.|.||| ||
Sbjct 3035 ATGATGGTTTTTTTTATTTTTTATTTTTGAGATGGAGTTTCGCTCTGTTGCCCAGGCTGGAGTGTAATGG--TG 3106
Query 44 --ATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGG 115
|||||||||||||||||||||||||||..|.|.||||||||||||||||||||.||||||.|||||||||||
Sbjct 3107 CAATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGG 3180
Query 116 ATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGG 189
|||||||||.|..|..||||.||||.||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3181 ATTACAGGCGCCTGACACCACGCCCCGCTAA--TTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGG 3252
Query 190 CCAGGCTGGTCTCGAACTCCTGACCTCAAG-------------------------------------------- 219
|||||||||||||.|||.||.|||||||.|
Sbjct 3253 CCAGGCTGGTCTCAAACGCCAGACCTCAGGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGAGATTACAGGGG 3326
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3327 TGAGTCACCGCGCCTGGCCAATGTTGTTGTTGTTTTTAAGACAGAATTTCACTCTTTGTTGCCCAGGCTGGAGT 3400
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3401 GCAATGGCGCAATCTCTGGCTCACCGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTACCTCAGCCCCCAG 3474
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3475 AGTAGCTGGGATTACAGGCATGTACCATCACACCCGGCTAATTTTTTGTATTTTAAGTAGAGAGGGGGTTTCTC 3548
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3549 CATGTTGGTCAGGCTGGCCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCGGCCTCCCAAAATGCTGGGAT 3622
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3623 TACAGGGGTAAGCCACTGTGCCCGGCCGGTTATTTCTTTAAAAGGTAATCATTTGTCAAGAGTAAAACCCAGAA 3696
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3697 GCTCTGACAGGCCATAATTTCAGATCCTTTGGCTTGGGCAGTTTTGATTTTCCCCGTGTTTGCATGGCATGAAG 3770
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3771 TCTTCGTCCTTGTCACAGTAGCTTGGGATGACTCCCAGTCCACATGGAAAACATCAGGGAGTGACAATCCAGCA 3844
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3845 AGAAATCCCTCGCTAGTTCCACACCTACGCACCGAGCGTCGGTGTGCCAGGCCCTGTGCTGGGCAGAGTGTGGT 3918
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3919 ATGTCAGGGTGTGCCGGTTTTAGGTAACAAGACTCCACCACTGAGTGGCACCTGCCCTATTGCAAAGGAATCCA 3992
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3993 GTTCCTCCGGAATAACAGTCCCACTGTTAACCTGGTGCTACTGGGAAGTTCCACACAGTAATCTGAGCAGTGAC 4066
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4067 TCATGGAAGGATGAGGAACGTTTGCTCCAGCTTCTCTCCCTTTCCAGCAAGGGCAGAGCTCCTAAAGCCAGGGG 4140
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4141 TTAGCACCTGGCCAGCTTATGTGGCAGATGGTCTCAGTTACAACTTCGCTGCTTTCCCAAACTCCTGCAGCCCT 4214
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4215 CCTGAGTCCGACTTCCGTTGATAGCAAGGCACTGGGTGGCAGCAACCTTTTTTCTAGTAGTTTTTTCCCAGCAG 4288
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4289 TTTTCCATTTCTCCACAGTATCCTTTTCATTTAGAGGAGCTTAATAAATGCTTTTTAAAAAGTAACCCACGTGA 4362
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4363 CGTAAAATTTTACAAGTTTTTGTGGCAAAATGATGCCCAGATAGTCACATTTAAGCAAATATTCAGCTTGATTC 4436
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4437 AGTGATTAACAGCAAATGGGTCTACGTGCTAACATGGCAGCACATTCAACACATAACACATCACTCACATTGAC 4510
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4511 GTCCACTGTCCCTGCACCTGCTACTTCAGGGGCACTGAGGCTCCTGTTCCAAGGCCTTACAAACCTATGTGGTG 4584
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4585 GCCTGCAGGGCAAAAGGAATTATCATTACAACTGGTTAGAGGTAGGAATTCAGAAAGAAATTGAGGAGGCCAAA 4658
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4659 CACACGTCGTTTGAGGCTAAAGGCTTAAGACGCTTCTTACCCAAGAGTGACCTCAGAGTTTCACATCCCAGACA 4732
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4733 ATCACACTGTGGTTGAGTGAAATCAAGTGCAGTTTTATTTAAGAACTGGAAAGAATAATCAGTATCTGTGAAAG 4806
Query 220 -------------------------------------- 219
Sbjct 4807 AAAATCCAATTTAGAATATTTAAATAAACATTTATGTA 4844
