Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
XR_001737164.2
Aligned Length:
4848
Identities:
191
Gaps:
4633

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAAGGTGGATGCCGGAAGAGGCGTCGCCTGCGGGTCACCCAGAGGACACCCGGCGGGGAATTCCGAGGGTGGGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGAGGAGAGGTAGGAGAGGCCACGGCAGAGGGAGGCCCCGCGCAGAGTGGGAACCATCGCCCGGTGCGGGCCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GAACTTCCAGGGCCGGCTACTCCTCGGCAGAGCGACCGCGCGGTGTCTCAGAGCGCGGCCCGGAGCCGCACTAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAGCGCTGGACGGCGGGAGAGAGGCTCGGAGGACCGGTAGCTCCCAGCAAAGCGGCCCAGCGGATGTCGGGAGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TATCTTCGGGCCCCTGGAGGGCCCGAGCTCCCTGGATGCCCCGAGCATCCACCCGCTGGTGTGCCCGCTGTGCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ACGTGCAGTACGAGCGCCCGTGTCTTCTGGACTGTTTCCACGACTTCTGTGCCGGCTGCCTGCGTGGCCGCGCG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACCGACGGCCGCCTCACCTGCCCGCTGTGCCAGACGTGGAGACCACGTACTTCTGCAACACGTGCGGACAGCCC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CTATGCGCGCGCTGCCGCGACGAGACGCACCGAGCACGCATGTTCGCGCGCCACGACATCGTGGCCCTGGGTCA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCGAAGCCGCGACGTGCCCCAGAAGTGCACGCTGCACGCAGAGCCCTACCTCTTGTTCTCCACCGACAAGAAGT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGCTGTTGTGCATCCGCTGCTTCCGCGACATGCAGAAGGAGAGCCGGGCACACTGCGTGGACCTGGAATCGGCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TACGTGCAGGGCTGCGAGCGGCTGGAGCAGGCGGTGCTGGCCGTGAAGGCCCTGCAGACGGCCACGCGGGAGGC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CATCGCGCTGCTGCAGGCCATGGTGGAGGAGGTGCGGCACAGCGCCGCCGAGGAGGAGGACGCTATCCACGCCC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCTTCGGCAGCATGCAGGACAGGCTGGCAGAGAGGAAAGCGCTGCTGCTGCAGGCTGTGCAGAGCCAATACGAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GAGAAGGACAAGGCCTTCAAGGAGCAGCTCTCTCACTTGGCCACCTTGCTGCCCACCCTGCAGGTCCACCTGGT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CATCTGCTCCTCCTTCCTCAGCTTGGCCAACAAGGCTGAGTTCCTGGACCTGGGCTATGTGAGTCTCCTCTGCT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CCTGCAGATGCCCCCTCCCCACCAGGAGCCCACCCTGCAGACCAAAGCCACCAACTCAGGGGTGGGCAGCCTGT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CACCTGGAGCCTGGACCAGGGATCTCGGGGCTGACCCCCTCCCAACTCCATCATCTGCAAACCTGTTAGGGTCA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CTGTTACAAGGACAGTGAAGCCAGGAAGGGGGCATGAGCCTACAGTCCCCCGTGGGGCGGAGTGACCACTGGAG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TCCAGCCGCCCCCTCTCCTGTGGATTTGGGGATGGGATGGGGGTTTGTCCGGGTGAGTCCCAGAAGAGGGCTGG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CGCTGCTAAGGGACACCAAGTCAAGTGCCAAAGACAGACGTGCTCCGCCTCCATCTCCCCTCTTCCTGCCCCCT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GGCTGCCACACCTCCACCGGCCTGAGGCCCTCCTCACTGCCACAGGAGCTGATGGAGAGGCTGCAGGGCATCGT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CACGCGGCCGCACCACCTAAGGCCTATTCAGAGCAGCAAGATTGCCAGTGACCACCGAGCTGAATTCGCGCGCT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GTCTGGAGCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTGCAAGTGGTGCTAACACGCTGGCAGGG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GGCTTAGGCCCCAAGGCGCTGACGGGGCCCCACTGCCCCTCCCCAGTAGGAAAGATGTCGGGGTCACCCGTCCA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AAAGCCCACGCTGCACCGGTCCATCAGCACCAAGGTGCTGCTGGCGGAGGGCGAGAACACGCCCTTCGCAGAGC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  ACTGCCGCCACTATGAGGACTCCTACCGGCACCTGCAGGCAGAGATGCAGAGCCTAAAGGACCAGGTACAGGAG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CTGCACCGAGACCTCACCAAGCACCACTCGCTCATCAAGGCGGAGATCATGGGAGACGTCCTGCACAAGTCCCT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GCAACTGGACGTGCAGATCGCCTCGGAGCACGCCTCCTTAGAGGGCATGAGGGTCGTCTTCCAGGAGATTTGGG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  AGGAAGCCTATCAGCGAGTGGCTAATGAGCAGGAGATTTATGAAGGTTCCAGACAGTTGGCTGCCGAGTGAACC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CTCTGTCCCTGAGCTAACCCACATACTAGCAGAGGAGGAAGTCAGAGTCGGCCACTAACCAGATGCAAATCCCC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ACACTCTTCCCCTTAGCGCTTGACCGTGCCTCCCAGCTGCTAACTGGCCTCAAATGATGCATGTGAGGTCAGGA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TTCATTGAGTAGAATGCCCCCACCAAGTGCCTCCCTCTTTAATTAGAGGTCATCATGGAAATGGTCGGGATATT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TACGTGGTGCCTGGCTTGAGTAAAAATCTGAAGCCAGATGCTTCAGGATTAAGACCCCATGCTCTGGCCTTGGC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CCCACAGCCCAGCTCCATGACCTTCTCCAGCTGAGGCAGGAGAATGCCTACCTGACCACCATCACCAAGCAGAT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CACGCCCTACGTCCGCTCCATTGCCAAGGTGAAGGAGCGGCTGGAGCCCAGGTCTTTGTTTGTTTGAGACAGTC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TCGCTCTGCCGCCCAGGCTGGAGTGCAATGGCGCCATCTCAGCTCTCACTGCAGCCTCCACCTCCCAGGTTCAA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TCGATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGTTTCAGGCACCCGTGGATGAGCAGTCAGAGA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GTCTACAGAACACGCACGACGACAGCAGGAACAACGCGGCCTCAGCCAGGAATAATCCAGGAAGTGTCCCGGAA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AAGAGAGAGAAGACATCAGAGCCTAAAGGAAACAGCTGGGCTCCGAACGGCCTCTCAGAAGAGCCTCTACTGAA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  AAATATGGATCATCACAGATCCAAACAGAAAAATGGGGGCGATGTCCCCACATGGAGGGAACACCCGACTTAGC  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  AAATGGGACCGGTCCCCAGGGTCAGGCTCTTAGAGCAGGCACAAGACTGGGACACTGGACAGAAGGTTGTTCCC  3034

Query    1  -------------------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATG  43
                                           |||||||.||..|||||.||||||.||||||||.|.|||  ||
Sbjct 3035  ATGATGGTTTTTTTTATTTTTTATTTTTGAGATGGAGTTTCGCTCTGTTGCCCAGGCTGGAGTGTAATGG--TG  3106

Query   44  --ATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGG  115
              |||||||||||||||||||||||||||..|.|.||||||||||||||||||||.||||||.|||||||||||
Sbjct 3107  CAATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGG  3180

Query  116  ATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGG  189
            |||||||||.|..|..||||.||||.|||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct 3181  ATTACAGGCGCCTGACACCACGCCCCGCTAA--TTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGG  3252

Query  190  CCAGGCTGGTCTCGAACTCCTGACCTCAAG--------------------------------------------  219
            |||||||||||||.|||.||.|||||||.|                                            
Sbjct 3253  CCAGGCTGGTCTCAAACGCCAGACCTCAGGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGAGATTACAGGGG  3326

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3327  TGAGTCACCGCGCCTGGCCAATGTTGTTGTTGTTTTTAAGACAGAATTTCACTCTTTGTTGCCCAGGCTGGAGT  3400

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3401  GCAATGGCGCAATCTCTGGCTCACCGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTACCTCAGCCCCCAG  3474

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3475  AGTAGCTGGGATTACAGGCATGTACCATCACACCCGGCTAATTTTTTGTATTTTAAGTAGAGAGGGGGTTTCTC  3548

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3549  CATGTTGGTCAGGCTGGCCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCGGCCTCCCAAAATGCTGGGAT  3622

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3623  TACAGGGGTAAGCCACTGTGCCCGGCCGGTTATTTCTTTAAAAGGTAATCATTTGTCAAGAGTAAAACCCAGAA  3696

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3697  GCTCTGACAGGCCATAATTTCAGATCCTTTGGCTTGGGCAGTTTTGATTTTCCCCGTGTTTGCATGGCATGAAG  3770

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3771  TCTTCGTCCTTGTCACAGTAGCTTGGGATGACTCCCAGTCCACATGGAAAACATCAGGGAGTGACAATCCAGCA  3844

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3845  AGAAATCCCTCGCTAGTTCCACACCTACGCACCGAGCGTCGGTGTGCCAGGCCCTGTGCTGGGCAGAGTGTGGT  3918

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3919  ATGTCAGGGTGTGCCGGTTTTAGGTAACAAGACTCCACCACTGAGTGGCACCTGCCCTATTGCAAAGGAATCCA  3992

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3993  GTTCCTCCGGAATAACAGTCCCACTGTTAACCTGGTGCTACTGGGAAGTTCCACACAGTAATCTGAGCAGTGAC  4066

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4067  TCATGGAAGGATGAGGAACGTTTGCTCCAGCTTCTCTCCCTTTCCAGCAAGGGCAGAGCTCCTAAAGCCAGGGG  4140

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4141  TTAGCACCTGGCCAGCTTATGTGGCAGATGGTCTCAGTTACAACTTCGCTGCTTTCCCAAACTCCTGCAGCCCT  4214

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4215  CCTGAGTCCGACTTCCGTTGATAGCAAGGCACTGGGTGGCAGCAACCTTTTTTCTAGTAGTTTTTTCCCAGCAG  4288

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4289  TTTTCCATTTCTCCACAGTATCCTTTTCATTTAGAGGAGCTTAATAAATGCTTTTTAAAAAGTAACCCACGTGA  4362

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4363  CGTAAAATTTTACAAGTTTTTGTGGCAAAATGATGCCCAGATAGTCACATTTAAGCAAATATTCAGCTTGATTC  4436

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4437  AGTGATTAACAGCAAATGGGTCTACGTGCTAACATGGCAGCACATTCAACACATAACACATCACTCACATTGAC  4510

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4511  GTCCACTGTCCCTGCACCTGCTACTTCAGGGGCACTGAGGCTCCTGTTCCAAGGCCTTACAAACCTATGTGGTG  4584

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4585  GCCTGCAGGGCAAAAGGAATTATCATTACAACTGGTTAGAGGTAGGAATTCAGAAAGAAATTGAGGAGGCCAAA  4658

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4659  CACACGTCGTTTGAGGCTAAAGGCTTAAGACGCTTCTTACCCAAGAGTGACCTCAGAGTTTCACATCCCAGACA  4732

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4733  ATCACACTGTGGTTGAGTGAAATCAAGTGCAGTTTTATTTAAGAACTGGAAAGAATAATCAGTATCTGTGAAAG  4806

Query  220  --------------------------------------  219
                                                  
Sbjct 4807  AAAATCCAATTTAGAATATTTAAATAAACATTTATGTA  4844

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