Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- XR_001737762.2
- Aligned Length:
- 6357
- Identities:
- 192
- Gaps:
- 6143
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTCTCTGCCATGTGGTTGTGCTTGCTGGGCTTTCCTTGTCCTACTAGGAGACCTGTATGTGGACATGGAAACA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGTAAATAAAGCGGGCATTAAGACAGTGATCAAAGAAATGTCATTCCCTAAAAGCAGATGGTCATGATCTGGGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCCATTAATAGATTTCAAGGGGAGATGACCCTGAAATTTTACAAAAAATTTTTGGTATTTATTTTCATATGCAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTCTCTATAAAGAATATATAACTTTCATATGGTTATTTTAAAAAGATTAAAAACTAAAATAATATTAAAGGTTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACAGGTCATTTATATGTGTAACCCATTAGCAAGTCACCAGGCAATCCTCAGAAATGGGGGGGAAGTTGAGACCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCAATGGCATTGTTTTTTAGCATCCAAAGCACAAAGGGACTTGCAAGAATCACTGAGTGACCAGAGCTCTGTAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTCACCCAACATTCCTGTGCAAGGGGGTCACACCACGACTGAGCTAAAACTTACTGTTTTATTCCAGAGTCCAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATCACATGAGATAAAACTTACTTCTTGAATATGCAACATTAGAGAAAACTGAAGTTATTCAGTTATTCAACTTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AAGTTCTCATGTAATAGTTGTGGCCATAACAAAGTGGGTGAACTAAAGTTTTAAAATTAGAAAAAAGCAGTCTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GAACATATGAAGATAGTTGCTCTAGGGTAAAGCCAAGCATCAGGCATCCTTCTCTTTTTTTTTCTTGATCATTC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTCTGTTTGGTATCTTTGAATTTTTGATATGCTCTGTCTGCTTACAGGGATGTACTGCTATAATGACACAAATT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTATGATTATAAATTAATTAATATGTTGCCTTTTCAGATTGTATGCATGGTTTCAATTTTAGGAGAAAACCAAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTTCAAATTCTTAGGCAGATGGTAAAAAAAACTTGTTCCAATTGTTTGAAGTCAGTAGACAACGCCATTACATA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TATAATTGGGGACTTAACAGCCTAGAAGACAATGCGCCATTACATATATAATTGGGGACGTAACAGCCTAGAAG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CCATTCTAGAAAGTGTTCCTCTGCATTCCCTGTGCTGTGGAATAGCTGCCATGCTCTTTGGTGCCACTTCCCCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TCCTGCAATAATGAGATTGGTTAGAATTGGTCAGAGGCACTGACTGTGCTAGGCTTTGCCAGCCCTCAATACCT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGTGTGACACAGAATGACAGACACAGCAGGGATAGAGGGGAATGAGTGGGGCACAATGTGGTTGCACGTGTGCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GAGGCCTTGAGACACCCTGAGTCTGCCTGCTGCTCCTGGACCATACTGGAGAGATGCCTGTGTGCCAGTCACAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CACCACAATGACTGCTTTATGTCATCATTATTTCACTATATTATTTCTGTTATATTTATTATACAATAAGGGTG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCTCTGGGTGAGGAAAATTTTTCTCCAGAAAATATTTTAAATGCACGTTTGGATTCTATCAGTTTTCTCTAAGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CAAGGCACAGAGGCTCAGAGCTCTCCATCAAATGTGCTCTCACAAGCCTAAAAACTTTGAGGGTGAATATGGCA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CTGAGATTGGCCTTCTTCCCATTTCACAGATGGAAAAGTGAAGATCCCAAAGATGGCCTGCATCAGACCACCAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAAGCCAAAATCAGGCCTCAGGGGTCTCAGGTCTTCTGGTCCATGAGACCACCCTGTGCCAATGAACACTGCAT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTGATACAGAAAGCAGGCTTGGAAAGATCTAATTCTACTGAAGAGAAAAAGACAGGATCATGTCAAGCTGCAGA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AGGTTTGGAATCCAACTGAGTTTAAAGCTGCTTATTCTTTCACAGCAAATGCCGTATTTCCCTTCTGATGAACG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGCCTGAAGAAGGCGTTTTCCTTTGTTTGATTTTGTGAGTGGCTCCTGGGAACAGATGCTTTCTTGCTATTTCA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GAAGACTTAGGAAATTTTTCAGTTTTCCACTAGACTGCATGCGTCCTGAGGACAGGCTTTGCTGCATCTTCAGT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ACCTCCAGAAGAGCCCAGAACAGGTGCTTCCTTCAAGCAGCGCAATGAATGGGGCAAGTGTTTCTGGAAGAGCA 2072
Query 1 ------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACT 56
|||||||.|||.|||.||.|||||.||||||||.|.|||||.||||||||||||||
Sbjct 2073 GGTAGGGCTGGCTGTGAGATGGAGTTTCACTCTTTCACCCAGGCTGGAGTGCAATGGCACGATCTCGGCTCACT 2146
Query 57 GCAACCTCTGCCTCTCGAG-GTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACG 129
|||.||||||||| ||.|| .||||||||||||||||||||.||||||..|||||||||||||||||||.|.||
Sbjct 2147 GCAGCCTCTGCCT-TCCAGTTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCGCCCG 2219
Query 130 CAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCG 203
|.|||||| |||||||| |||||||||||||..||||||.|||||||||||||||||.||||||||||||.|
Sbjct 2220 CCACCATG-CCGGCTAA---TTTTTGTATTTTTGATAGAGACGGGGTTTCACCATGTTGTCCAGGCTGGTCTTG 2289
Query 204 AACTCCTGACCT-------CA--------AG------------------------------------------- 219
|||||||||||| || ||
Sbjct 2290 AACTCCTGACCTTGTGATCCACCTGCCTCAGCTCCCCAAAATGCTAGGATTACAAGCAAGAGCCACCGTGCCCA 2363
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2364 GCCCACCATCTCCATTTTGCAAAGGAGGAAACTGAGACACAGTGACACCAAGGATGACAACTGGAGTAAACCAT 2437
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2438 GGAGGCAGGATTCTCACCCTAACAGATACCTCAACAGGCCAAATTTAAGTACTTGTGGAAGGAAAACTACCATG 2511
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2512 TCTTGAGCACCTAGCGTACTTCAGGCACCATGTTAGGTACTTTGTATGGGTTAACTAATTTGGTCATCGTAAGT 2585
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2586 CCTTGTGAAGGGGGCACTGTAAGTCCTGTGTTACAAATGCAACAACTTAGATGGAGAGAAGTTAAGTAATGTGT 2659
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2660 CTCTCTTTGCCCAGCTTGTAAGTGGCAGAGCTGGGACTTAAACCCAGAGGAGACATACACATGACTGTGTTGTG 2733
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2734 TTGTCAATTTTTAAAAGTTACATTACTTAATTGATTGGTTAATTCTTTTAACGTGTGATGTTTGAAATGTGTAG 2807
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2808 GCATCTAAGACAGTATGTGGGCAGGGGGTGGGCAGGGAGACACACAAAGATGACTCTGACCTGGCTACTAGCAG 2881
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2882 GCATAAGCCGTAAGTAAATGACTACAGTGCAAGGAGGAATGGGAGGAGTGCCGCTCAGGCTGGAGAGCATTCTG 2955
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2956 GGGTGCTGGGGATGGCAGAGGGTACTTGTGTCTGCTGCTTTTACCTTCTGCACCCTGGGGAGGGTGGTTCAGAA 3029
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3030 GTCAGCCTGCCCCAACGCAAAGCCCAGGCTGCAGATGCTTTGACCCAATTCTGCTCAAGCTGTTGGTCATCTCC 3103
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3104 TTCCAACACTCAAGAGACTGGCTTTTGTCCCTGGATGGATCATCTCTGCTCTGATGATTCTGGCATCCATGTGA 3177
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3178 GAACCAGCAGGGGAACAGCTATGCAACAGAGGCCTCTGGAACCTCACGCTCTTTAGATGTTAAATTGAAATCAG 3251
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3252 GTGCTTTATGACTCGTCTGTATTCAGGAGCCCATCAACGCTGCATGGGAACTGCTGTGGATTCAAAAGGAACAC 3325
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3326 CAGTGTCATCCCTGCATGGCCCTTTACTCCACTGTGCTCCATGTTCTCCTCACTCCCTCCCAAGGGAGTTTTCT 3399
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3400 CCCATCTGCAGACCCTGCTGGGTGGGGCAGAAAGAGCACTGGGTTTGGACTCAGAAGATCCAGGCCCACTATCT 3473
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3474 GGTCTGTCACTCAGCAGCATGACTGTCACGAAGGCTCTCCTAGGCCTCAGTCTTCTGAGCAGTAAAATGGGATA 3547
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3548 ATAATGCCTTCTTGCAGAGCTGCCATGTGGGTTACATGAGAAGTATGTGGAACGGTAGGTGTCACACTTACTGC 3621
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3622 AATTTCCAGGCCTCACGGACTGGCATACAGCTATGGCCAAGTCATTCCCACCCTTCAATCCTCTGTGAAGGGCT 3695
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3696 TCCTGACTGTTCCAGCCTGCCTGACTTCTGGAGGGATGTAGGACTGACCCGAAGTATTTGGCCAACCACGGGGA 3769
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3770 GGGGCAGAGGGGGCAGACACTGGGTGAATCTGGGCTTTGGGCTGTGTGGGGCTAGTGGGCTCCTCCAGTGTACA 3843
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3844 ATTCTTGAGAGGCTTCCCAGTACTGGTAGAATACCACCCAAACCTCTAATGTGCTCCACACAGTCCTGCATCCT 3917
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3918 CTGGCCTCTGACTCCCCAGCTTCATCTCACACCACACTCCCCCATGCTCTCAGTGTTCCACTGCAAACAGCTTT 3991
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3992 CCACCCCCAATAGCTTTCCTTATGGTCCTCCAACATGCCAGGCTCTTCCCTGCCTCAGAGCCTCGGCAGACACT 4065
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4066 GTCTGGAAGGTACTTTTTCCCACTGCTCCCTTGGGCAACTGAGTAATCCTTAGGTCTAAACCCAAGTGTCACTT 4139
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4140 CCTCTGGGATACCTCCCCTGATCCATGCACCACCTCCTCCCACGCTGAACGAAACTAGGTCTCTGCTATAGAAC 4213
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4214 TGCATCTTCTCCTGATTCATAGAACTTATCACCATTTGTAATTATATACATGTGAACCTATTTATGATTTAATG 4287
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4288 TGTCTCTCTTCGTGTGGATTGGAACACCTTAACTGATCACTGCTACTGACGAGGATCCACCACAGCCTCGGATA 4361
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4362 TAGTGGTATTCCATCAGCGTGTATGAAGAGTGAATGTCTACATGAAACAGGTAGCGACAAGGGGCAAGAGGATG 4435
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4436 GAGGAGAGTGGGAAGGGAGTGGTGGCAGTGATGTGCCTGAGAGGTACCACGGTGGGCAGCAGGGAAAAAGCAGA 4509
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4510 GGGCTCTAGGAAGTGAAAGAATGGGTCAGGAGGAAGACCTGAGAGTGGGCTGTTTGCATTTAAGATTTCAGAGG 4583
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4584 GGCAGCCATGAAGCATGGCCTGTTTTGAGGCTCCTAGGAAGGGGAAGATGCAGCCTTGTGATGGAGTTTTGTAC 4657
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4658 AGTTAGGGCATCCAGAGTGCCCTGGGACTGGGAACTGGCAAGGAAATAAGAGAGAGCTCTGGAATGGGGGGTGA 4731
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4732 GGGGGAGGGTACCGATGGTGCCTATGTCCCTGTGTTATGGGGTGGCCCTGCACTCCAGATGTCACCAGTATCCC 4805
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4806 TTGGACTCAGTAGGAGGGAGCTCTCTCCAGGGAAAAGGGAACTCTGTTAACATAACCGCGGTGGGGGTTAAAGA 4879
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4880 GCAGCTTTCCCTCAGTGGTACAGAGCCCTGTGGCTGGCAGCGCTGCACAGACTCCTCGAGACTCAGCTCCCACT 4953
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4954 GTCCCTGAGCCACACTGGGGCTCTTCGCCCTCCTGGCAGCAATTATAAAGTTGAACAGCAGAGGCAGGGGAGGA 5027
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5028 TCGAAAGCCAAACAGGAAGCCAATAATTGCCTCTTGCAGAAATAGCTCTTTCAAAATAAAAGTGAGGTCCTGAG 5101
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5102 GTTCCTACCCAGGTCAGTTATACAATGCTGCTCCTGTCCTCCCAGAGCCCTGTAATCTTCTTCCCAGTGTCTAC 5175
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5176 TTTCTGGCCCTGAACTCCAGTACAGGTCAAAAGATGTCCATGTGAAAACTAAGAAATGAAAAGTCCAATCCCCC 5249
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5250 ATGCAACACTTTTTAGGGCTTCTGAGCACGTAAACACAAACAAACATACAACATTTTCTAAGCCTGGTCATCAC 5323
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5324 AATCATCTGTCCACACACTGACACATGAACCTTCTCAGGTTCCGGACAGGCAGAGCAATGCCTCACTGAAACTG 5397
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5398 AACCCTTACTCAACAGGAAGACTAGGCTGAAAAAAACAAAACAGGGGAAGTAGGTGTCAGGAACCAAAGGAGGA 5471
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5472 GGCCACTCCAAGGACAATGGAATGAGAGCTCTCCAAGGTCACAGGCTATTAACTCGGTCCTTTCATGGGTAAAA 5545
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5546 CTAACCCCTTTGAAGGGAATGCAGTCCCAATCAAAGTCAGTAATAAAAGCCACCTCAGAGATATGGCTCATGAG 5619
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5620 CCATCAGTTCGAATGATTTCTTCACCACCTGCCATGTGCTTGGTACTGTCCTGGGTGCAGGCGACAACAAGACT 5693
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5694 CATGAAATGGTGTCCCTGCTCTAATTCTGGGACAGAATTAGAGCAGATCACTTCAATACAATGTGGGATATTTG 5767
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5768 GGGACAGAGACATGTCATCAGGGGCAGCAGCAAAAGCCATCTGGCCATCTGGGAAGAGGTGGATGATGGTGACC 5841
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5842 ATAATGATGGCTAGTGTTTATTGAGGGCTTACTCTGTGCAGGTATTGCTCATGGCACTTCACATGCACCAACTG 5915
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5916 ATCAATCCTCACAACAACCCAGTGAAGCTGGTACTAACTTTATTTCCATTTTAAAGTTGGGGTGGGGGTGCGAC 5989
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5990 TGAGGTTTGGGGAGGTGAAGAAACTGGCCTAGGGCAACACAGGATTTGAACGTAGGCTGACTGGCTCCTGAGCA 6063
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6064 GCATCCTGGGTGAAGGATGAGCAGCAGAGGAGGAAGCAGCATGAACAATGGCCTCAAGGTGTGGCACGGGCAGG 6137
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6138 AAGGGTAGAACTACTTGTTTCTGTATTTCTTAAACACAATGTTGGGCCAAGAGTGAGGGAAGTCAAGGCTGAAG 6211
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6212 GGGAGGTGGTGGCCTTGACAGCTCCCCCATGAAAGTCTGGTTGGGTTGGTGCAAGAAGGATGGTGATATGGTTT 6285
Query 220 ------------------------------------------------------------------- 219
Sbjct 6286 GGCTGTGTCCCCACCCAAATCTCATCTTGATTTCCTACATATTGGGGGAGGGACTCAGTGGGAGGTA 6352
