Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
XR_001738696.1
Aligned Length:
3888
Identities:
189
Gaps:
3672

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCCGCGCAGGCGCTGTGGTGGGCTCCGGTGCACTGTGGGATGGAAACCGGAGCGGCGCGTCCTGGCAGGACCGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCGGCGGCGGCGGCGGGGCCGGCGGCGGCCAGGGACCCGGGCTTAGGCTCGGCCAGGCCGGCTGAGGGGCGCGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCGGCCAGCGGGCGGCGGACGCCGTCATGAACGCGGCGGTGGTGAGGCGGACGCAGGAGGCGCTGGGGAAAGTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ATTCGGAGGCCGCCGCTGACCGAGAAGCTGCTGAGCAAGCCCCCGTTCCGCTACCTGCACGACATCATCACGGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGTGATTAGAATGACTGGTTTCATGAAGGGCCTCTACACAGACGCCGAGATGAAGTCTGATAATGTGAAGGATA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AAGATGCAAAAATTAGCTTCCTACAAAAGGCCATAGACGTGGTTGTAATGGTGTCGGGAGAGCCACTGTTGGCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AAACCAGCCCGAATCGTGGCGGGGCATGAGCCTGAAAGAACAAACGAGCTGCTCCAGATAATTGGAAAATGCTG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TCTCAACAAGCTCTCTAGTGACGATGCGGTGCGGAGGGTTTTAGCTGGAGAGAAGGGAGAAGTGAAAGGCCGGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCTCACTGACCTCAAGATCTCAGGAATTGGATAATAAGAATGTGCGAGAAGAAGAGTCCAGAGTTCACAAAAAT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ACAGAGGATAGAGGAGACGCTGAAATAAAAGAGAGAAGTACAAGCAGAGATCGAAAACAGAAGGAAGAATTGAA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AGAAGACCGCAAGCCAAGAGAAAAGGACAAGGACAAGGAGAAGGCCAAGGAGAATGGCGGAAACAGACACAGAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAGGGGAGAGAGAGAGAGCCAAAGCCCGGGCCAGGCCAGACAACGAGCGACAGAAAGACAGAGGCAACAGGGAG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CGGGACAGAGACTCCGAGCGCAAGAAGGAGACAGAGAGAAAGAGTGAGGGGGGGAAAGAGAAGGAGAGACTGAG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGACAGGGACCGAGAGCGCGACCGGGACAAAGGGAAGGACAGGGACAGACGGAGAGTGAAAAACGGGGAGCACT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CCTGGGACCTGGACAGGGAGAAGAACAGAGAGCATGACAAACCTGAGAAAAAGGTGACTCCACCAGTGATGCAG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AAGGAGATGCTGGACCTGCTGGCCAAGATAAGTCTGAGGTGCCAGAGACTCCAGAAATTCCTAATGAGCTTTCA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TCCAACATCAGAAGAATTCCTCGGCCTGGGAGTGCAAGACCAGCCCCTCCCCGGGTCAAACGGCAAGACAGCAT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GGAGGCGCTACAAATGGATAGGTCAGGGAGTGGTAAAACCGTTTCAAATGTGATTACAGAGTCACACAATTCTG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  ACAATGAAGAGGATGATCAATTTGTGGTGGAAGCTGCCCCTCAGCTCTCTGAAATGTCAGAAATTGAAATGGTA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ACAGCAGTGGAACTAGAAGAAGAGGAGAAGCATGGTGGACTTGTGAAAAAAATTTTGGAGACGAAGAAAGATTA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TGAGAAATTGCAGCAGTCACCCAAACCTGGGGAGAAGGAGCGATCTCTCTTTGAGTCGGCATGGAAGAAGGAGA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AGGACATCGTTTCCAAGGAGATAGAGAAGCTCCGCACGTCCATCCAGACCCTGTGCAAGAGCGCACTTCCCCTG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GGGAAGATCATGGACTACATCCAGGAAGACGTGGATGCCATGCAGAATGAGCTGCAGATGTGGCACAGCGAGAA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CAGGCAGCACGCCGAGGCCCTGCAGCAGGAGCAGAGGATCACAGACTGTGCCGTGGAGCCCTTAAAGGCTGAGC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TCGCGGAGCTGGAGCAGCTGATCAAAGACCAGCAAGACAAGATCTGTGCTGTGAAGGCCAACATCCTCAAGAAT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GAAGAAAAAATCCAGAAAATGGTATATAGTATCAATTTGACTTCGAGAAGGTGAACACTCAAAAGTTTCAGAGA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TGAAAAGTCACCTCAGTTTAAAAGCAAAAAGGAAGATAGAAAATCATTACTCTTTTAAGTTCCAGTTTGCTAAG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  AAAATGAACAGTTTACAATGTTATTATCCAGCTAATTTTCAGAGCTTTAAAACTGTAAGCATGTTAAGTGTATT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  AAAAAAACCATGTTTTCTTACCTCCTTCCAGATGGAATACTGGCTAGTTATAAATAGCGCTTCCAAACACCTCT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GTGAAAAGTTTTTTTGAAAGCCTGTTCTTTGTGTTTCTGCTGTAACCTGTTTAGTTCTGTACCAGAACTCTCTA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GCAGGTAAGTGGTGTGGGCATACCAAGGGAACAGTAGTCCTTTATTTTGGTTTAGTGGAAAGACTTTCAGAGGT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CAGTGCCGAATGAAGGATGACTGTGTACTTTTTGATAGGCACTTGATAAGTAGAATGAGGCCTGAAAATGAATA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CATTATATTTTTAGTTAATTTCCAATGGAAAGGGCTAACCTCAGCCTGTCTCCATATCAGGTACCTATCAACTG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GATTGTTTTCATTTTTGTTTTTTGACCTCTTTGTAATTGCATGTACTTCTCTATGTAATTTTCCTCTTGATCTC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TACTATCGTTTGCTTGTGTTTCTAGTCCTTAAAGTTCATAAATTTAAAAAGGAGATTTCAGGATGGCCTTTATG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GACGTTGTCTGGACATACATCCTCACTTTCTTCCGCAGTTTACCCTGGTTTTCCTCAGACAGAGGCTAGCGCAG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  CCCCCCGGAGTCCTTGTTCTCCTTAAGAGGGTCTCGCTCTGCAAAGCATTGGCGCCATGGCTTTTCCTTTGCAT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GGGTGTGCATACCGAGAGACAGGCAGCTTAGGAAAAACAACATAAGGAAGACTTAAAAGGATGCACTGATTTAC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  GACGTTTTTTGATGTTAGCCATTTTTTTGGAAATTGTTTTTTAAAGCAAAAGTTTTTTAAAAACATGGTTTATA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GTTTTTCACTTACATATACTATTGTAAATACTTAGCAGAGTCTTAAGTTACTGTATAAAACATTTCATTGTGTT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TGAAGACATACTTATGGGTCTTGAGGTCTGGGTCCTAATACTTTTAAATAGTGTATTTATTATGTAAACTGAGG  3034

Query    1  -------------------------------------------------------------------ATGGAGT  7
                                                                               |||||||
Sbjct 3035  AGTGCCATTTAAAGTGTGAGGATTGCCTGAAAAGGTTTTGTTTCTTTCTTTTTTTTTTTTTTTTGAGATGGAGT  3108

Query    8  CTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAG  81
            ||.|.||||||||||||.||||||||.||||||...|||||||||||||||||||.|.|||||.||||.|||||
Sbjct 3109  CTTACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCACCGCCTCCCGAGTTCAAG  3182

Query   82  CGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTG  155
            .||||||||||||||.||||||.|||||.||||||.|||||||.|||||.|||||||||.|||||   ||||||
Sbjct 3183  TGATTCTCCTGCCTCAGCCTCCTGAGTAACTGGGACTACAGGCGCACGCCACCATGCCCAGCTAA---TTTTTG  3253

Query  156  TATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG----------  219
            ||||||.||||||||||||||||||||.|||||.|||||.|||||||.|.|||||||||||..|          
Sbjct 3254  TATTTTCAGTAGAGATGGGGTTTCACCGTGTTGACCAGGATGGTCTCCACCTCCTGACCTCGTGATCCGCCTGC  3327

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3328  CTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCCGGCCAGGTTTTGTTTCTTTAAGGATTA  3401

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3402  GCACAAATGGCACCGTTGGGTTTTTCTTCATACAATTTCCAAAATAAATTCTGTACTCAGGTTGTTATATGATT  3475

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3476  TTCTGAGCTGAATAAGTTCAGGAGCAGATTATTAAGATCTGCCATTCTGAAACGCTGGTCTTTTTCTCCTTCCT  3549

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3550  ATAGTGCACCATAAAATTCTGTTTGATCAGATTATATTACATACATTTTGGGGGAGTGGAGGGACATGAGTTAA  3623

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3624  GTAGCCCTTCATGTATTTATAATCTCTTTTCTACTGAATCAAATGACTTAGCCATGACCCTGAATGGACCTTGT  3697

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3698  TTTACTTCAAGTTGAGATGTCTGCCTTTTATGAATTTGTATATGTGAATAGAGTTTGGGGGTTGCCAAAAATTG  3771

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3772  CATACATTGTATGTAAGTAAAATTTTTTATGAAGTAGTCTGTCAAATTGTATCATAAAGTTTATTTTTCTTTTA  3845

Query  220  ----------------------------------------  219
                                                    
Sbjct 3846  TACGTAAATCATTAAAAATAATCACATATTTTTTCCATAA  3885

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