Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- XR_001739279.1
- Aligned Length:
- 3537
- Identities:
- 189
- Gaps:
- 3322
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATCGTGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTGCGTCTCAAAAAAAAAAAAAAAAGTTTGTTGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTGGCAGCTGGTGAGAGCATACCTGTATTTTATAATTTTTCACTTGACCACCTTCTCTGGTTCAAGTCATCAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTTGTACAATTTTAGCAAACTTAGCAAAGTCTGGTGCTGCAACCAGAGTCTGCCCTGTGCTTTTGGAAATAATG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAAAAAATAAGCAGTTGTGGCAGAAATTTGAAAAGTAAGGGTTTTTTGTTCCTTTTTTTTCTTCTTTTTTTTTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTTTCTTCGAGCCTCTGGGCACTTTGAAATATTCTCAAAATAGGGAAAAATTGTATACATATTTGGAATATTCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGTTTTTAGTTAGACCCTCCTTTATAGCACCATCCATTCTGCCTTACGTATTTGGCATTGATGTAGTTTTAAAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATAAATTTGATGTTGACTTGTAAGTATTAAAATTTAATCTACTTCCTTCCGGGGCCATAATTCTCTACTTTGTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GTCCTTGGTTACCTTGGCAATCCCATTGCTGTCATAAGCACAGGGTTCTAACTGCAGGGGTGGGGTGAGCATCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGGCCTGCAGGCTCCCAGGGGCCCTGCCGTCCATGGGACCAGACCCCTCCTAGCAGCAACAGTGGGAACCAGGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTACGTGCTTTTTGGCAAGAATGTGATTCTGAATGTTAGCCCTTTGTGACTTGTTTGAAAAACAGTTCCTCCAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GTCCCCAGAACAGATTATTGCTGTCTTCAGAAGGACATCACCTTCTTGCCCAGAGCATTCATGTTTTTGGAAGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TCAAGAGTAGAAGTACTGATGCCACTCCTCACGGGTTCCAGGTCCTGCCATGCACTCAGGATTCCTGAGTCCTT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CAGTGTGCTGGGCTGTGTGTGAGGTGGCAGGAATAGAACACCAAGAAGAATATGTCCTCTCTTTGGAGGGACCT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ACAGTCCAGCAAGAGGAACAGAATCCTGTAAACAAATCAGTGCAGTAAAATCTGAGGACCACATCTGTAGGAAT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCTTGGAGTCCTGTGGATGTGCAAGGGTGCAGGTGGTCCCAGGGCGTGGGGCTGTGGTGAGGGAGGGCCTTATA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TGATGTCGTACCGTTGAGTCTTGAAGTCCAGGCAGTTACCTGTGGGTTACCAAATGCTAAGGCACTAAGCTGGT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCATTCTGGTCTTCTGTACCTGCCTCCCTGCCTTAGGTAAATATTGATCTACTCCTGAGGTGGTGGCCAGCTCG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GCGTCTGCGGTAGGATTTTCACAGTCACCTGGTCTCTAGAGGGCTGCTCAGACCAAGAATTTGGGGTGATCCTC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AATTCTTCCCATGCACCCCACGTTTCCAGGCACCGGTGCCTTCCTTTGTGGAGCATATACATGCATTCCAGGCC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CGCACTGTCTGATGAGGCAGCCTAAGACAAATCCAGCTCTCAGCCGCCACATTGCAAGTACTCAGTAGCCACAC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GTGGCTGGTGGCTACCATATTGGCTCAGCAACCACCGGGAGAGCCATCACCTGGAAACTTGCTGAAATGCAGAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CCCCGGGTTCCACCCAGGACAATTTTTACAGCATCTCCACGTACACCACAGGCACGTGAGAGCTTGCGAAGCAC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGTTCGAGACGGAACCCCGGCTGCACACTGGAGTTGCTTGGGCGTTTGTGAAGCAGAGCTGCCTGGCTCCACTC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CCTAAAATTCTGACTTAAATTAGTCTGGGTGGGGCTTCGAGCCTTGGCATTTTTTAAAGCCTCCTCCCAAATAG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GGTTGATAATCACTGATAAACAGACAGTTACGTAACAACCTTAGGCAGTTGATACGTGCTGTAAAGGAAAGTCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGCATAACATGGGGATAGAAAGTGGTTCTGGAGATCAGGAAACCGAAATCAGGAAAAGCCTCTCTGCAGAGGTG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ACATTTGAGCAGGCTGGAATGCAGAGAGGAAGCCAGCCACAGAAGATGTGGGAATAGAACAGCTTGGGAAAAGG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CCCTGAAATGCCAATGGGCGGGATCATGGAAGGACTGAAGGAAGGTCAGGGTGTGTGGGGAGGAGTGGGCGAGG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AAGAGAAGGATGAGAGACGGGCAGAGGGGTGGGCAGTGCCAGGTCACAGAGGGCCTTGTCCATCTTGGGGAAGG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AATTTGGATTTTGTTCTAGTGTGATGGGAAGCTGTTGAAGGGTTTTGAGCAGGGAATAACATGGTCCGATATCC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ATTTTAAAGACTTCACTGTGGTTCTAGGGAAAACAGACTAGCAGGGCATGAAAGGAAAGAGGGAGACCAGTTGT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GGGGTGAGGGGCTATTGCAGTCATCTAGGCAAGAGGTCTTGGATGAGGAGGTAGCAGGGGGGGTGGTGGTAAGT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GGCCTGATTGAGGTCCATTGTACAAGAAGAGGGGTCCAAACCTACTGATGGATTGTCATTATTGTGTGCTAGTG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GCATAGAGGTAGACCCAATAGAACTCCTGCCCCAAACAGGGCAACAGCCAAGCTCAGTTCATCCAAGCCCCCTG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AACAGACCTTCCAGCATCCCCATGGTGAAGCTGTTGCTGTCTAGAGCTACTTAGTGTCAGAATCCAGGCCAGCT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CTGTGCTGCTTGATGTGACTGGTTATAGGACTTGTGTTGGGACCAGTTCCAGGGTCAATCAAGGAAAGATTGAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GCATAGCTGCATAGACTGGGGCCCAGGGAAAGAGAGAAGCATGGCTGCATAGACTGAGACTGAGGGATCTGCTC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 ATGCGACCCTCTGCTGTTTCTATGCAGACTACAGCAGGTGATACTTATGGGCATTGTCAGATGCCTGGGATGCT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ATCCCCATTTCAGCTCCCCAAACACTCCTCTTTCTTTCCCTACTAAAGAGAGGTGACGTTCCGTGATATGAACC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TACCTCCTTTGCTTACGCCTTTTCTGTGTAATGTGGCCTCCAAGTGGATTGCTAGGGCCCTTCCAGGTACTTTT 2960
Query 1 ---------------------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCA 41
.||||||||...||.||..|||||.||||||||.|||||..
Sbjct 2961 TTTCTTTTCTTTTTCTTTTTTATTTTGTTTGAGGTGGAGTCTTGCTCGGTTACCCAGGCTGGAGTGCAGTGGTG 3034
Query 42 TGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAA--GCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTG 113
.||||||||.||||||||||||||||||||||||.|||| |.||||||||||||||.||||||.|||.|||||
Sbjct 3035 CGATCTCGGTTCACTGCAACCTCTGCCTCTCGAGTTCAAGGGGGATTCTCCTGCCTCAGCCTCCTGAGCAGCTG 3108
Query 114 GGATTACAGG-CACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGT 186
|||||||||| .|| .||.|||||||||||||.| ||||||||||..|||||||||||||||||||||||||
Sbjct 3109 GGATTACAGGTGAC-TGCCACCATGCCCGGCTGA---TTTTTGTATTACTAGTAGAGATGGGGTTTCACCATGT 3178
Query 187 TGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG----------------------------------------- 219
|||||||||||||||.|||||||||||||||.|
Sbjct 3179 TGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCCACCTCGGCCTCACAAAGTGCTGGGATTATAG 3252
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3253 GCGTGAGCCGCTGCGCCCGGCTGCCTTTCCAGGTGCTTTTATACCATTATCGTTTTTATCATGTCAACAATGTC 3326
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3327 TTGGAATAAACAGACTACCAACCCGAGCTGGAATACTTGGGCTGTATTTTTATGATGATGGTCATTTCTATGAA 3400
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3401 GGGATTTGACTGATTTAGTTTCTTCACTCATAAATGTATATTGGGCCCCTACCGTATGTTGTCACTGCCAGGTG 3474
Query 220 ----------------------------------------------------------- 219
Sbjct 3475 CCAGGGATGTAAAAGTGGACAGGATGGCCTGGACGTCTAAAAAAAAAAAAAAAAAAAAA 3533
