Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- XR_001741752.1
- Aligned Length:
- 4250
- Identities:
- 190
- Gaps:
- 4034
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGGGTGGAAGCTGTATCTCCTTTGCTACAACCTTGCTACCTAGAGCTATTTTTTGATAAAAGCAAGCTTTGAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCAAATTTTGCCTCAGGTACAAGGATCTATTGTTCCGCAAGCACAAAAACAATTATATAGCCAGTTCATATAAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CACAGTGAAGTCCTCATTCTCTCTCCTTTCAGGTTTCTGAGCAAGATGCTTGCATGAAAGATTCAATCTAAGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAATGCAAAAATATTGTGAAAGCAGCAGGATCAGCTAGCCTTCCAGTTGGCTTCTTAAATGCTGCATTGAAAGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATGAAACAGAACGGATGTGAACAAGAGTTCCCTGAGAAAGGACAGCTCTTAGAGAGATAGGATAATTACTGGAC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCAAGAAGATACCAAATCATGGTGTGCATTTCTGCGTTGTGTTTGGAAGAGGAACTAGGATTGTTATGAAAAGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAGGATGTGTTCAACTTAGAAGAATTAAACCTCAACCATCTGTCTCTTCCAAATGGCATTCTTGATTCTAAAAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCTTAAGTAGAGTGTAAAGTTATTGTTGGATACTGTAGTAGCCAGGCTAAGCTGAGCTATTCAGTGGAACAGAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AAACCCGAAAATCTCAGTGGCTTAACACAACAAGATTTATTTCTTTTTAGTATCACAATCTGATGTAGATTGGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTGGTCTCCTGCTTGGCTTTCCATCAAGTGACAGCTCAGGGATCCAAGTTGCTTTTATTTGGAAACTGTCATCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TGAGAGCATTTTGTTTCCAGCTGTATGGACAGGAGATCCAGAAGGTGTGGAGAAGTGCATCCTTCCTGGATCAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAATGATACATCACTTTAGCTCACATTCCATTGTTAAGAATTAGTGACATGATCCCACTGGGATTCATGGGGTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TGGGATATGGAACACTTGGATATTTGGCGAGCATGAACAATCTTTGCCATAGAAACATTGCCTCTATAATGTTA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TTCTATATCCCTTATCTTCTCATGGTAGATTTCACATAGGATTAGTATCAGGAAAACGTTTTTCTCTCCTAAAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGTTGGTATTCTTCTTTTTTCCCTCTGGAGTCAGGAACTTTAGATTTAATATTAATGACTATCTAATCTGAGAT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTTTAGTAGCATCATGTATCCTATTTCTCTATTGTGTTTCTGGAATAGTTTTATTATTGTATTTTAACTGACTA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACTGTATTTGATTTTTTAAAAATTGCCATAATCCTTTCTAGTTTTAGCTGTTCATTTAATGAACACTTACCAAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGCAGATGTGTTGATAAGGATGAAGGATGTTTTTGGCTGCAACAGAAAAACTAATAAGTGGTTTAAGCAATAAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AGTTTAATTATCTGACACAAGAAGTCTGGCAGTTTCAGGATAGGTTAATTCAATGGTGTGATATCATAGAGGAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CATGTATACTCACTTTTTCTGTTTTATAAACTTCAGCGTTTGATGGTGTTCCCCCTTCCTGTCACATACAGGTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AGTAGTTCCAAGTGTTGCTTGTCATGGTAGACCCTAGTCAGGCCTGGGTCTTGTGACGCAGGAGACAAATATGC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TCATAGACTTGTCGTTATGACATGGCTGCAGTGTGGTGCCACCAGGCCTGCATCACGCCTACTCATCATATAAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATTAGATTATATAGTCTGTGGAAAATGTTGCAAAATGATACTGGTGGCAGGGTCAGAAATTGTATTCAGACTTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GATGTTAGATCCAGGCAAATGGCTTGTTGAAAAGAGATTTCTCTTTAGAGAGAAATCATGTTGGTGTACCAGGT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GACATGTTTGGTTGGGGGTGGGGTGGGGGGACTGCTTGGATAGCATGGTAGTGATAGAAGTGTGATAAGCTGGA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGCTGGATATAGTTAGAAGGATTTACTGATCAATTGGATGTGAGGAGTGATATAGAGAGAGATGTTGGGAATGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CTCCAAGTTTTGGCCTGAGTGATGGGAAAAATTGAGTTGCTATTTATCAAGATAGGGAAGACCAATGAGTTTGG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGCTGTCATAAAATAAAATGTATCAGATTTTTAGCAACAACTGGAAGTAAGACATTGCAAGGAGTCTGGGCTGG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GCTGAGATAGAGTTCAGATGGGGAGCTGGAATCAGACTGCTGCCCCAGGTCCTGGGACCCTGCCATGCAGAAAA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GACACCTGGCATGGGCAAGGACTCCAGTATGCCGGAGCCTCTTCCTCCTTTCTCAGGCCAAATTTGTGTCCTTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CAAAATTTGGCTACAAATGTTAAATTTACAAAGACCTCTGATACCCATTATCCCACCCAACTCTCTGGAGAGCC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTTGTAATGTGGTAACTGCTCTTATGCACATAGCCAAAGACTTGAAAACAGTCTCAGAAAAGCTGTAATTTCTA 2368
Query 1 ------------------------------------------------------------------AT------ 2
||
Sbjct 2369 CCTTCATTCATTTAAAGAAAACTTACTAAACACTTATTTATTTATTTTTATTTTATTTATTTATTTATTTTTGA 2442
Query 3 GG---AGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCG 73
|| |||||||.|.|||.||||||.||||.|||||||||||.|||||||||||||||||||||||||||||||
Sbjct 2443 GGCACAGTCTCAGTTTGTTGCCCAGGCTGGGGTGAAGTGGCACGATCTCGGCTCACTGCAACCTCTGCCTCTCG 2516
Query 74 AGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAAT 147
.|.||||||||||||||||||||.||||||..|||||||||||.|||||.||..|.|.||||..||||.|.||
Sbjct 2517 GGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGTCATGCACCACCACCCCCGACAAA- 2589
Query 148 TTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG-- 219
||||||||.||||.||.||||..|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2590 --TTTTTGTACTTTTGGTGGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGGG 2661
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2662 ACCTGACTGCCTCTGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCTGGTCCCAAACATCTATT 2735
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2736 AGGTACTTGCTGTATGTGGTGAAATAAACCCCAGCTCTCCTGATTCAAGGTTAGTGTTCTTTTCACAAATCTAC 2809
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2810 TTCAATACATCAAATCCTACTTCTCTTTCTTTCTATATTTAACTCATAAATATTCCTCTTCTGTCATTTGTGGT 2883
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2884 TTTGAAATGTCTGCAAACTCATGGATACTATTCACTTCTAATGAATAGAATAAAGCAGAAGTGATGGAATATAA 2957
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2958 CTTCAGAGGCCATTTCATGAAAGCCACTGTGGCTTCCTACTTGTTCTCTTGCTCTCTCTCTTAGAACACTTGCT 3031
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3032 CTGGGGAAAGCCAGCTGCCATATTGTGAGCAGACCTATGAAAAGGCCCACTTGGTGAAGAACTGAGGCCTCTGG 3105
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3106 CTGATGGACACATGGGTGACCTTGCAATCAAGTCTTCTGGCTTCAACCAAGCCTTCAGCTGAGACTGCAGCCTC 3179
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3180 ATGAAAGATCCTGAGCTAGAAGCATCCTGCCATCCTAATAAGCCACTCTTGAATTTCTGACCCTTAAAAATTGT 3253
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3254 GAGATAAGCACCTGTGCTTTTTTTAAGTGTTAGATTTAAAAAACCCTGAAAAAATAAAGAAGAAAAAAGACAAC 3327
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3328 TCATAATCTCACCACATTAAAAAGAATAGCTATAGAAAAATTCCAGTAGTATAAAAAGGAAAAATGGAAATAAC 3401
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3402 TTCCCACCATCCCTGATCTTTAGTTCTTTTTCCCACAGTGACATTTTCTTTCCCAAGAAATGTTCATGCATATG 3475
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3476 CAATATATGTGTAAACCCTTTAAGATGTTCACAAAAGGATCATGTTACACTCATTCGAAAAACTTAATATTATA 3549
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3550 TCTTGAAGGTGTCTTCATATCAGTATATATATATCTATCTTAGTTTGTTAATAGATTTCCCATAATTTAAATGT 3623
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3624 ACCATATTTCTTTTACCAGTCCCCATATATGGACATTTAGGATATTTCCAGTATTCTTTTCTGTTATAAAAATA 3697
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3698 TGGTGATAAACATTTTCATGCTTTTTTGAGTATCTTCAAGTAAAGTCCTATGGGTAGCATTCTGGCATCACGTT 3771
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3772 GTATATGCATTTAAAGTTGATGCTATTCACTTGTTCCACAATCTTTGCTCCGAGTTTACACTGATGAAGCATGA 3845
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3846 GAATGCTATATCCCCACAAACCTGTGCATATTGTTGATAGTAAGCATTGTTTGCTATTTTCTGACTATTCATTT 3919
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3920 TTCTTCTTTTGAGAATTGCCATGCCTAGAAGAGTGCCTGTCTTGTAATATATAAGATAATAACTTGATAGCTAG 3993
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3994 CATTTCTGAGGCTTCTTGTGCCTTTAACGTATATTTACTGTTTTGATACTTACAAAGACCCTATGAAGTACGTA 4067
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4068 CTATTATTATCTGCTTATGGCTGGTGGGAAAACTGAGCTGTACAGAATTTAAACAAACTGTCCCAGGTCACACA 4141
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4142 ACTAGGAAGGGTGGAGCCAGGATGCAAATGATACGGAATTTTAAAAAATGGGTAGTTGAGTGAATGAATAAATG 4215
Query 220 -------------------------------- 219
Sbjct 4216 GATGACCTGTTTACATCCTTTCTCATTTTTAA 4247
