Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- XR_001741754.1
- Aligned Length:
- 4084
- Identities:
- 190
- Gaps:
- 3868
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTCCGGACCACCTCGCAGCGCCGCGTCCTTAGGGGCGGGCTCGGGGGGCACCACCCTCGAGGGGCGGAACCCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGGGGGCGGTGGCGTGGATCCGGAGGTACCTGCTTCTTAAATGCTGCATTGAAAGGATGAAACAGAACGGATGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAACAAGAGTTCCCTGAGAAAGGACAGCTCTTAGAGAGATAGGATAATTACTGGACTCAAGAAGATACCAAATC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATGGTGTGCATTTCTGCGTTGTGTTTGGAAGAGGAACTAGGATTGTTATGAAAAGGAAGGATGTGTTCAACTTA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAAGAATTAAACCTCAACCATCTGTCTCTTCCAAATGGCATTCTTGATTCTAAAAATCTTAAGTAGAGTGTAAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTTATTGTTGGATACTGTAGTAGCCAGGCTAAGCTGAGCTATTCAGTGGAACAGATAAACCCGAAAATCTCAGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGCTTAACACAACAAGATTTATTTCTTTTTAGTATCACAATCTGATGTAGATTGGGTTGGTCTCCTGCTTGGCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TTCCATCAAGTGACAGCTCAGGGATCCAAGTTGCTTTTATTTGGAAACTGTCATCTTGAGAGCATTTTGTTTCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGCTGTATGGACAGGAGATCCAGAAGGTGTGGAGAAGTGCATCCTTCCTGGATCACAAATGATACATCACTTTA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCTCACATTCCATTGTTAAGAATTAGTGACATGATCCCACTGGGATTCATGGGGTCTGGGATATGGAACACTTG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GATATTTGGCGAGCATGAACAATCTTTGCCATAGAAACATTGCCTCTATAATGTTATTCTATATCCCTTATCTT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTCATGGTAGATTTCACATAGGATTAGTATCAGGAAAACGTTTTTCTCTCCTAAAATGTTGGTATTCTTCTTTT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTCCCTCTGGAGTCAGGAACTTTAGATTTAATATTAATGACTATCTAATCTGAGATTTTTAGTAGCATCATGTA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCCTATTTCTCTATTGTGTTTCTGGAATAGTTTTATTATTGTATTTTAACTGACTAACTGTATTTGATTTTTTA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AAAATTGCCATAATCCTTTCTAGTTTTAGCTGTTCATTTAATGAACACTTACCAATAGCAGATGTGTTGATAAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GATGAAGGATGTTTTTGGCTGCAACAGAAAAACTAATAAGTGGTTTAAGCAATAAGAGTTTAATTATCTGACAC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AAGAAGTCTGGCAGTTTCAGGATAGGTTAATTCAATGGTGTGATATCATAGAGGATCATGTATACTCACTTTTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTGTTTTATAAACTTCAGCGTTTGATGGTGTTCCCCCTTCCTGTCACATACAGGTTAGTAGTTCCAAGTGTTGC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTGTCATGGTAGACCCTAGTCAGGCCTGGGTCTTGTGACGCAGGAGACAAATATGCTCATAGACTTGTCGTTAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GACATGGCTGCAGTGTGGTGCCACCAGGCCTGCATCACGCCTACTCATCATATAATATTAGATTATATAGTCTG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TGGAAAATGTTGCAAAATGATACTGGTGGCAGGGTCAGAAATTGTATTCAGACTTTGATGTTAGATCCAGGCAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ATGGCTTGTTGAAAAGAGATTTCTCTTTAGAGAGAAATCATGTTGGTGTACCAGGTGACATGTTTGGTTGGGGG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGGGGTGGGGGGACTGCTTGGATAGCATGGTAGTGATAGAAGTGTGATAAGCTGGATGCTGGATATAGTTAGAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GGATTTACTGATCAATTGGATGTGAGGAGTGATATAGAGAGAGATGTTGGGAATGACTCCAAGTTTTGGCCTGA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTGATGGGAAAAATTGAGTTGCTATTTATCAAGATAGGGAAGACCAATGAGTTTGGTGCTGTCATAAAATAAAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGTATCAGATTTTTAGCAACAACTGGAAGTAAGACATTGCAAGGAGTCTGGGCTGGGCTGAGATAGAGTTCAGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TGGGGAGCTGGAATCAGACTGCTGCCCCAGGTCCTGGGACCCTGCCATGCAGAAAAGACACCTGGCATGGGCAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GGACTCCAGTATGCCGGAGCCTCTTCCTCCTTTCTCAGGCCAAATTTGTGTCCTTGCAAAATTTGGCTACAAAT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GTTAAATTTACAAAGACCTCTGATACCCATTATCCCACCCAACTCTCTGGAGAGCCTTTGTAATGTGGTAACTG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CTCTTATGCACATAGCCAAAGACTTGAAAACAGTCTCAGAAAAGCTGTAATTTCTACCTTCATTCATTTAAAGA 2220
Query 1 ------------------------------------------------AT------GG---AGTCTCATTCTGT 17
|| || |||||||.|.|||
Sbjct 2221 AAACTTACTAAACACTTATTTATTTATTTTTATTTTATTTATTTATTTATTTTTGAGGCACAGTCTCAGTTTGT 2294
Query 18 CGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCT 91
.||||||.||||.|||||||||||.|||||||||||||||||||||||||||||||.|.|||||||||||||||
Sbjct 2295 TGCCCAGGCTGGGGTGAAGTGGCACGATCTCGGCTCACTGCAACCTCTGCCTCTCGGGTTCAAGCGATTCTCCT 2368
Query 92 GCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGT 165
|||||.||||||..|||||||||||.|||||.||..|.|.||||..||||.|.|| ||||||||.||||.||
Sbjct 2369 GCCTCAGCCTCCCAAGTAGCTGGGACTACAGTCATGCACCACCACCCCCGACAAA---TTTTTGTACTTTTGGT 2439
Query 166 AGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG-------------------- 219
.||||..|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2440 GGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGGGACCTGACTGCCTCTGCCT 2513
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2514 CCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCTGGTCCCAAACATCTATTAGGTACTTGCTGTATGTG 2587
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2588 GTGAAATAAACCCCAGCTCTCCTGATTCAAGGTTAGTGTTCTTTTCACAAATCTACTTCAATACATCAAATCCT 2661
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2662 ACTTCTCTTTCTTTCTATATTTAACTCATAAATATTCCTCTTCTGTCATTTGTGGTTTTGAAATGTCTGCAAAC 2735
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2736 TCATGGATACTATTCACTTCTAATGAATAGAATAAAGCAGAAGTGATGGAATATAACTTCAGAGGCCATTTCAT 2809
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2810 GAAAGCCACTGTGGCTTCCTACTTGTTCTCTTGCTCTCTCTCTTAGAACACTTGCTCTGGGGAAAGCCAGCTGC 2883
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2884 CATATTGTGAGCAGACCTATGAAAAGGCCCACTTGGTGAAGAACTGAGGCCTCTGGCTGATGGACACATGGGTG 2957
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2958 ACCTTGCAATCAAGTCTTCTGGCTTCAACCAAGCCTTCAGCTGAGACTGCAGCCTCATGAAAGATCCTGAGCTA 3031
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3032 GAAGCATCCTGCCATCCTAATAAGCCACTCTTGAATTTCTGACCCTTAAAAATTGTGAGATAAGCACCTGTGCT 3105
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3106 TTTTTTAAGTGTTAGATTTAAAAAACCCTGAAAAAATAAAGAAGAAAAAAGACAACTCATAATCTCACCACATT 3179
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3180 AAAAAGAATAGCTATAGAAAAATTCCAGTAGTATAAAAAGGAAAAATGGAAATAACTTCCCACCATCCCTGATC 3253
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3254 TTTAGTTCTTTTTCCCACAGTGACATTTTCTTTCCCAAGAAATGTTCATGCATATGCAATATATGTGTAAACCC 3327
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3328 TTTAAGATGTTCACAAAAGGATCATGTTACACTCATTCGAAAAACTTAATATTATATCTTGAAGGTGTCTTCAT 3401
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3402 ATCAGTATATATATATCTATCTTAGTTTGTTAATAGATTTCCCATAATTTAAATGTACCATATTTCTTTTACCA 3475
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3476 GTCCCCATATATGGACATTTAGGATATTTCCAGTATTCTTTTCTGTTATAAAAATATGGTGATAAACATTTTCA 3549
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3550 TGCTTTTTTGAGTATCTTCAAGTAAAGTCCTATGGGTAGCATTCTGGCATCACGTTGTATATGCATTTAAAGTT 3623
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3624 GATGCTATTCACTTGTTCCACAATCTTTGCTCCGAGTTTACACTGATGAAGCATGAGAATGCTATATCCCCACA 3697
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3698 AACCTGTGCATATTGTTGATAGTAAGCATTGTTTGCTATTTTCTGACTATTCATTTTTCTTCTTTTGAGAATTG 3771
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3772 CCATGCCTAGAAGAGTGCCTGTCTTGTAATATATAAGATAATAACTTGATAGCTAGCATTTCTGAGGCTTCTTG 3845
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3846 TGCCTTTAACGTATATTTACTGTTTTGATACTTACAAAGACCCTATGAAGTACGTACTATTATTATCTGCTTAT 3919
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3920 GGCTGGTGGGAAAACTGAGCTGTACAGAATTTAAACAAACTGTCCCAGGTCACACAACTAGGAAGGGTGGAGCC 3993
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3994 AGGATGCAAATGATACGGAATTTTAAAAAATGGGTAGTTGAGTGAATGAATAAATGGATGACCTGTTTACATCC 4067
Query 220 -------------- 219
Sbjct 4068 TTTCTCATTTTTAA 4081
