Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- XR_001746839.1
- Aligned Length:
- 7113
- Identities:
- 189
- Gaps:
- 6901
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGCTGGGATTACAGGCGTGAGCCACTGTGCCCAACCAGGTGTTCTTAAATATAATTTTTTATCTCCTTTCCTAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAAGAGGGGTTTTTAGAACTGTTTGCTTGGCAGGTGAAGAATCTGCACGTTGTGGTTCTTTATTACTGAATGAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAAATACCAGACTTTACCTTAGCTTTATTTGTTCCCCAGTTCAACGGAATTTAACCTTAGAATTTCCTAAAGAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCTTTCTAAAAGTTTTTTATTTCTCTAAGTGTCATAGTACTGCATTTATGAATCCCAAATTGGCTTCCACTGTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TATTTAAACTTGATATAAGATACAGGAAGATTATTTTGTCACCACCCTCTTTCTATTCCAAACACTATTTACAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAAGGAAACTTTAGTAAGAGAAGATATTTTGGAAAAGATTTTGTAACCAACTTACACTTGTGTCTGTTTTTGTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TTTTTTGGTTTAAATTCAAGGGGAGGCCAAGCGTGATGGCTCATGCCTGTAATCCTAACACTTCGGGAGGCCAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CACGGGTGGACCGCTTGAGCTCCGGAGTTCCAGAGGAGCCTGGGCAACATGGTGAAACCCTGTCTCTACCAAAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ATACAAAAACATTGCCCAGATGTGGTGGCATGCACCTGTGGTCCCAGCTATTTGAGAAGCTAAGGTTGTAAAAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAAATCAACACTTAAGATTTTACTAAGAGATCATTCAACTTCAAATCTGAAGCACAAGAAGTCAGCAAAATTAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATGGCTATCATTGATTTGAGAATGGATTTTCACTTACATTTTAAATTAAATTGCTAACACTACAAAGTGTTTAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GGAAAACATGAACATTTCTGTTTTACTTCAGTTGTGAAGAGACTCTAATTTCCATCTCTGTTTAGAAATTCCTA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AATGTGCAAATATAGGTTCTTTGCAAGCAGAACCACCAAGTAGTCCTTGGCACACAGAATTTATAAACCTAAAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGAATATTGAATGGAAAACTTAGAGAACAGTTGGAATGGGAGATACCATTATCCCAAGTCCAATGGTTGGTTAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CAAATAGCTTTTCGATTCTCTCCAAATTAAGCTCACACCAACAGTTTTGTATTGTGAGGCAGCTGGTTCTGTTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CTTTTCCTCCCCTGCTCTGCTCCTTCTCTGTCCTTCTGTAGCTGCAAGCCTCAGGGGTTGACCCACGCAGGCTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGCTCACTGATGTCCTTCTCTTGCTTTTGGTTGGATTTCGTCAGCAGGTGAAGCCCAGGGAGCAAAAAGAGGGA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GTTGCCAGATTATTTCTACCTCCACGCCCTCCCTGCCTGTCAAGGACTGAGTCCCAGGAAGATGCCAGCTCCAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGCTTTCCCGCTCTTGCCGTCTCAGGCCACTCTGGCTGGCCGCTGGGTCCCTCAACATCCCCTGTTGGTTCCTT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TAGCCCAGCCTACACCGCTGGAAATAGGCCCTTTATGAGATTCTCTTCTAAATCCTAGAAGAGTGTACCCTCCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTTCCTGAAGAATCCTGACAAGTATGTAAACATTACTTAATAATTGTTAGGTAAAAATACTATAAATATTAAAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTATAAGTAAATAAAAATATTTAATTTTACATAAGACAAAGCTAAAAATTTCAGTTTATAATTTTTAAACATAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ACAATAAATTTCCCAGAAAGAAATTGCTGACTACCAACCAAATTTTCATTTTTATTTTTTAAATGTTGGAAAAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTTTGTCAGAAAGATTCTTATCAACCAATCAAATTGTGTTAGCAGTTGTGTTAGTAGTCACAAGGAAAATAATC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AGTCATATTAGTTTTCTTACTATTGTTCATATTTTGTCTTTCAAAAATAGGTGTAATGTACAAATACTTCTTAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTAGATATGCTTAAATAAAACATTTCATATTGTATTGATTTGGGTATATTGTAGAAAATAAAAAGTTCCTCTTC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AAAGCTTCCCTTCTTGTTAAAGAATAAATCATAAGTGTTAGAATTAACAGTTTCTTTTAAAGACTAACTTTATG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CTAGACATGCTCACAGACACGTAGTACATTCTATGTCCTCGTACTTTAACCAAGATATCTGTGCTAGACGTGCA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CACAGGCATGTCTCAGCTCGCAGCCTATGCCCTTTCCTTATTTGGGAATGTTTATTCCTTATTTGGAAATGTTA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TTACTTTTCTAAGTCCTTTCGTAAGCAACTTCATTTTTTTTCCTTTGTTTTTCTATTGCCTTTACCTGTTTAAA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AAAGTTTTAAACTGTTAGCCAATCGGGTTTTAGTTTAGATTGTGAGGTCTGGCTCCAGCCAATGGAGACAGGAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ACAGTAGCAGGGACAAACTGGGTAAGGGATAAAAATTGCTTCGCTCCATTGTTCCGGGGTGCTCTCGCCATTGT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TCCAACTGCCATAAACACCCTTTCTGCAGAAAGCAAAAATGGCCTTGCTGAGAGAATTAAATTTATGTTCGAGT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GCTATTTCTTTGTGGCACTGGGGAACAAGCATTCTATTTCTAAATAAACATTTTTACGTATAACAGTACTGAAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ATAACCATGGACTGTTTGCAAATTATATTGGAATCATGTAGACACAGCTTTAATAATGGATAATATAATTATTA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CTTTTTCTAGCCAAAAATCAGGAGCAGACTATGTATACAAGTCTGGAATGGAGGACTTTCCATTCTAGAAGAAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GAGTGGCCATTTTCAACTCTTCTTCCTTTTGAGACCTCACTAAAATTAGAGGAACAGAATTTAAAAATACATTA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CATCTCCATGATAAAGAGAACAGGAAAGGAAATATCAACAGACAAGGGGATTTGACAGATATTTTTGGAGGGAA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GAAACGGTGGAGCAGAGGTAATTAAGCCGATTGGAGAGAGGCTGTCCTGCAGACCGAGTGAGACAAGGTCCTGG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CACTGGAGAGGCTGCTGCCTGGATCCCTCCCCCAACACAAGAAATCAGGAAATCACCACTCCTCTTGCCCCAGG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CCAGAGACTAGGTTTCTGTAGACATGGAAGGTAGAGGCTGCGGACCTGGACCCCAGACACAGGTGAGAGGAGAG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GCTTTGCGCTAAAGAGAGAGAGAGAGAGAAAAGGAGGTGGGGAAGAAGAAAGGAAAGAAAGGAGGAAGAGAGAA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GGCCAGGCGCGGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAACACAAAAAATTAGCCGGGCGTGGTC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAACGGCGTGAACCCGGGAGGCAGAGCTTGC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 AGTGAGCCAAGATCGGGCCACTGCACTCCACCCTGGGTGACAGAGCGAAACAACGTCTCAGAAAAAAAGAAAGA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AAGAAAGGAGGAAGAGAGAAAAGGAGCGTGGAAAGAAAAGAAAATTTCAGGAGCTTCTACATTGGTTATGCCAG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CAGAAACAGTTAAGCCATGGAAACTGAGTCACATACACGCTGTTTTTCTTCTCTGGTGCATGACCTTTGCTTCT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GACCTTTGTGTTGAGATGTTATGAATTAACCACCCTTCCTATTCTTCATTCAAACCTCAACTAAATGACATTGG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 AGATAGAGACCCTTACCTCTTTACGATGGATGTTAAGTAACTCCCATAGAGTATAGTCAATGGTGGCCAGCCAA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 CTTGTGTGTGTGTGTTTTATATCTTATATTTAAAAAATGAAAAAAATGTTGTAATTCTGGCCAGATACGTGGCT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 CACAACTGCAATCCCAGCACTTTGGGAGGCCAAGGTAGGCGGATCACTTGAGGCCAGAAGTTCGAGACCAGCCT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 GGCCAACAGGGTAAAACTCTGTGTCTACTAAAAATACAAAAAATTAGCCAGGCGGGCATGGTGGCGCACGCCTG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TTATCCCAGCTGCTCGGATGACTGAGGCTTGAGAATCCCTTGAACCTGGGAGGTGGAGTTTGCAGTGAGCCAAG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 ATCATGCCACTGCCCTCCAGCCTGAGCAACAAAGCAAGACTTTGTCTCCGAAAAAAAAAGAGCATGTTGTAATT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 CTGTTCAGCACCCCTGTTTTTTGCTTATATGAATGATCTTCACCTTTCCCCGCACTGAGGAGTGATGATCACCA 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 TTCTTTGGTGTCTGCTACCCTAACACTTGGCGCTTGAATAAACTCTTTTAAGTGGAGCCTGAGCCTTTTGATTA 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 TTTTAGGTTGACAGGAGGAAGGGAGGAAGGGTGGGTTAAAATTAAATCTGCATACTAAGCAATAATATCCTTGC 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 TGCTCTTCTTCAACTGTTTGTAGGTTATTTCTGCTCTCAGGCTTCTGTTCTACCCCTAACTCTCCTGGCTACCC 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 AAAGGCCGGAGGTTATCTACTGGGGAAATCTCAAAAGACTGTAGAAAAAATGTCTCAAATTCTGGTTTTGGGAG 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 TCTTCCAAAAAAAAATTTTTTTTAATTTGGCTTGCCTCTTGAATATCCTATAGAGAAGTCCCAAACTGACAAAC 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 CTGGGCTGTCCTCCCAGATGCTCTACTGAGCTGTCAGTCTCTCCCTCTGGAATGGGAATAGAGCACCAAGCATA 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 ACCTGTTATTTGAAGAAAGGCTGCTACACTACACACGGACCCAAATGAACAAATATCAGGAGAACAGAAGTTAG 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 GGGAAACAGAAGTGATGAAGAGAACAGAATAAAAGTTTTATTTTAAAATTATTATTATTATTATTATTATTATT 4736
Query 1 -------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAAC 61
| |||||||.|.||||||||||.||||||||.|.|||||||||||.||||||||||||.
Sbjct 4737 ATTATTTGAGACCA---AGTCTCACTGTGTCGCCCAGGCTGGAGTGCAATGGCATGATCTTGGCTCACTGCAAA 4807
Query 62 CTCTGCCTCTC-GAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACC 134
|||||||| || |.|.||||||.|||||..||||||.||||||..|||||||||||||||||..||.|||.|||
Sbjct 4808 CTCTGCCT-TCTGGGTTCAAGCAATTCTTGTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGTTACCCGCCACC 4880
Query 135 ATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTC 208
|.||||.||||| ||||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||
Sbjct 4881 AAGCCCAGCTAA---TTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGACTGGTCTCAAACTC 4951
Query 209 CTGACCTCAAG--------------------------------------------------------------- 219
|||||||||||
Sbjct 4952 CTGACCTCAAGTAATCCACCTGCCTCAGCATCCCAAAGCACTAGGATTACAGGCATGAGCCACCGCACCTGGCC 5025
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5026 AGAATAAAACTTTTAATATCTTTTATTAACACCGCACCCAGCCAGAATAAAACTTCTAAAATCTTTTATTACTA 5099
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5100 TCATCAGATAAAATAAGACATTACATTCATGAAACAGAACAGGTATTAGAATATAAGAGAGAAGAAAATCCTCA 5173
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5174 AACAAAATTGTGGCAGCTGAACTAAAAACATCAAATAAGGATTGGAGTGTAATATTAAAGAAATTTCCCAGGAA 5247
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5248 GCAGAACAAAAAGAAAGTAAAATAGAAAAGGATAATAGAGCAAGTGCAATTAATTCAGAGAATCAATCCAGAAG 5321
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5322 GCCCTGATACCTGACTGAATAGGGTTCCAGAAAGAGGAACAGAGAAAAAGGATGTGAAGAGTTGCATTGATAAT 5395
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5396 AGTACTACTAACACTATTTTTTGTTCTTTGTCTTCAAGAAAACCTCTCAGAGTTGCAGTGTATGAGTCTCTGGA 5469
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5470 TTGAAAGGGCTCAATAGATGCCCAGCATAACGATGAAGAGGACCCACATCTAGACATATATTGGCCTGAAATTT 5543
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5544 TCATGTATTTGGGATCAAGAGAAAATCCTGAAAGCTTGTAAATTAATGCTGTTCAATATGGTGGTCATTAGCCA 5617
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5618 CGGCTGACTGTTCAGCACTGGAGATGTGGCCACTCTGAATGGAGATGTGCTGTAAGTGTAAAATAGACACTGAA 5691
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5692 TTTTGGTGGGCTCAGTAGAAAAAAAAAGAGTAAAATGTCTCATTAATATTTTTCATTTTGAAAACATGTTGAAA 5765
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5766 TGATTTTGTATATATATATTTTTTTTAATTAATTTTTTTTTTTTTGAGATGGAGTCTCACTCTATGGCCCAGGC 5839
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5840 TGGAGTGCAGTAGCGCAATCTTGGCTCACTGCAACCTCCACCTCCCTGGTTCAAGCAATTCTCCTGCCTCAGCC 5913
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5914 TCCTGAGTAGCTGGGACTGCAGGCATGCGCCACTATGCCCTGCTAATTTTTGTATTTTTAGTAGAGACGGAGTT 5987
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5988 TCACCATATTGGTCAGGCTGGTCTTGAACTCCTGACCTCGTGATCTACCCACCTCGGCCTCCCAAAGTGCTGGG 6061
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6062 ATTACAGGCCTGAGCCACCACGCCTGGCCGAAATAATATATTTTTTAAACATTGGGCTAAATATAACATATTAT 6135
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6136 TACAACTACTTCCAGTTGTTTCTTTTTATTTTAAGGTGGCTCCTGGAAAATTTTAGATGACATAGACGGTTTCT 6209
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6210 GTTCTGTGTCTGTTAGACGGTGCTCTGCAGAGAAGCAGACAGGTCATGCATAAGGACACTGAGGCCAGAATGAT 6283
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6284 ATCTGACCTTCAGCAGCAGCTCTAGGAAACTGAAGAAAAATGATCCCCCTATTCAGAGAGAAATAGTTTTCAAC 6357
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6358 CTTAGTAGTCTACATTCTGGCAAACTTTCAGTCAACTGAAAGACAGTTAGAGACATGCAAGCACACAAAAGTTT 6431
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6432 ACCTTCTTTGCTGTCTCCTTGAACGTTCCTGAAGGAAGTACCCCAGGAAATAAACTTGTAAACCAATGGCATGG 6505
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6506 AAGGCATGGGATTTAAAAGCAGGATGTCCAGTATAGGACTCGGAGCAAGTTGTGCAGCAGGTCCAGGAAGCAGA 6579
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6580 CAAGCCCGTGCAGAACAGGAAGTCAGGGGGCTCAGTGGGAAGTCATGGCACCAGTGGATTTGCTGACATAGGGA 6653
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6654 GTCTTCTGGCTCATTGGAAGACACGTATGTAGACAACAAAGTTATTTTTTGAGAGGTGATAATTTAAGAAAAAA 6727
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6728 GTTGTACTCTTCCTGGCTCATGTGAACAGTATCTATATGACACAAATAATAATGTGAACTCAAAGACTGTGTGG 6801
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6802 TATGCTTACACCAGGGGAATGGGGGAGGGAGAGCAAAGTGCACTTGAGTTAGATAACATCTGTCAAGACAGGGA 6875
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6876 GAAAAAAGATAATGTCTAAAATAAATAACAGCACATGCATACTCCTTAGGAATTGGAAGGTAAATGGCAGAAGA 6949
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6950 AATGGCTTAACAATTTGTACGTGGTTTCTTGTGACTTCTTATGACTGTATAAGACCAGGGAGCAATAGGGAGGG 7023
Query 220 -------------------------------------------------------------------------- 219
Sbjct 7024 GAGGCACAAGGGATGCTATTTTGTTTCTATTACTATTTGATTTTGTAAAACTATACACATCAATTAAAATGATA 7097
Query 220 --------- 219
Sbjct 7098 AATATTATA 7106
