Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
XR_001748856.1
Aligned Length:
4279
Identities:
186
Gaps:
4068

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAAGTTGTAGGCGGGGCGCGAGGTTCTAGTACCCGAGCTCATACTAGGGACGGGAAGTCGCGACCAGAGCCATT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGAGGGCGCGGGGACTGCAACCCTAATCAGAGCCCAAATGGCGCAGTGGGAAATGCTGCAGAATCTTGACAGCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCTTTCAGGATCAGCTGCACCAGCTTTACTCGCACAGCCTCCTGCCTGTGGACATTCGACAGTACTTGGCTGTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGGATTGAAGACCAGAACTGGCAGGAAGCTGCACTTGGGAGTGATGATTCCAAGGCTACCATGCTATTCTTCCA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTTCTTGGATCAGCTGAACTATGAGTGTGGCCGTTGCAGCCAGGACCCAGAGTCCTTGTTGCTGCAGCACAATT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGCGGAAATTCTGCCGGGACATTCAGCCCTTTTCCCAGGATCCTACCCAGTTGGCTGAGATGATCTTTAACCTC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTTCTGGAAGAAAAAAGAATTTTGATCCAGGCTCAGAGGGCCCAATTGGAACAAGGAGAGCCAGTTCTCGAAAC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACCTGTGGAGAGCCAGCAACATGAGATTGAATCCCGGATCCTGGATTTAAGGGCTATGATGGAGAAGCTGGTAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AATCCATCAGCCAACTGAAAGACCAGCAGGATGTCTTCTGCTTCCGATATAAGATCCAGGCCAAAGGGAAGACA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CCCTCTCTGGACCCCCATCAGACCAAAGAGCAGAAGATTCTGCAGGAAACTCTCAATGAACTGGACAAAAGGAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AAAGGAGGTGCTGGATGCCTCCAAAGCACTGCTAGGCCGATTAACTACCCTAATCGAGCTACTGCTGCCAAAGT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TGGAGGAGTGGAAGGCCCAGCAGCAAAAAGCCTGCATCAGAGCTCCCATTGACCACGGGTTGGAACAGCTGGAG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ACATGGTTCACAGCTGGAGCAAAGCTGTTGTTTCACCTGAGGCAGCTGCTGAAGGAGCTGAAGGGACTGAGTTG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CCTGGTTAGCTATCAGGATGACCCTCTGACCAAAGGGGTGGACCTACGCAACGCCCAGGTCACAGAGTTGCTAC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AGCGTCTGCTCCACAGAGCCTTTGTGGTAGAAACCCAGCCCTGCATGCCCCAAACTCCCCATCGACCCCTCATC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CTCAAGACTGGCAGCAAGTTCACCGTCCGAACAAGGCTGCTGGTGAGACTCCAGGAAGGCAATGAGTCACTGAC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TGTGGAAGTCTCCATTGACAGGAATCCTCCTCAATTACAAGGCTTCCGGAAGTTCAACATTCTGACTTCAAACC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AGAAAACTTTGACCCCCGAGAAGGGGCAGAGTCAGGGTTTGATTTGGGACTTTGGTTACCTGACTCTGGTGGAG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CAACGTTCAGGTGGTTCAGGAAAGGGCAGCAATAAGGGGCCACTAGGTGTGACAGAGGAACTGCACATCATCAG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CTTCACGGTCAAATATACCTACCAGGGTCTGAAGCAGGAGCTGAAAGACCCCTGGCTTCCCTCATCATCTGTCT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GTGGCTATCTGTCCCACAGGGCAGAACTGTAGGACTGAGGATCCATTATTGTCCTGGGCTGACTTCACTAAGCG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AGAGAGCCCTCCTGGCAAGTTACCATTCTGGACATGGCTGGACAAAATTCTGGAGTTGGTACATGACCACCTGA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AGGATCTCTGGAATGATGGACGCATCATGGGCTTTGTGAGTCGGAGCCAGGAGCGCCGGCTGCTGAAGAAGACC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  ATGTCTGGCACCTTTCTACTGCGCTTCAGTGAATCGTCAGAAGGGGGCATTACCTGCTCCTGGGTGGAGCACCA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GGATGATGACAAGGTGCTCATCTACTCTGTGCAACCGTACACGAAGGAGGTGCTGCAGTCACTCCCGCTGACTG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AAATCATCCGCCATTACCAGTTGCTCACTGAGGAGAATATACCTGAAAACCCACTGCGCTTCCTCTATCCCCGA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  ATCCCCCGGGATGAAGCTTTTGGGTGCTACTACCAGGAGAAAGTTAATCTCCAGGAACGGAGGAAATACCTGAA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  ACACAGGCTCATTGTGGTCTCTAATAGACAGGTGGATGAACTGCAACAACCGCTGGAGCTTAAGCCAGAGCCAG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  AGCTGGAGTCATTAGAGCTGGAACTAGGGCTGGTGCCAGAGCCAGAGCTCAGCCTGGACTTAGAGCCACTGCTG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AAGGCAGGGCTGGATCTGGGGCCAGAGCTAGAGTCTGTGCTGGAGTCCACTCTGGAGCCTGTGATAGAGCCCAC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ACTATGCATGGTATCACAAACAGTGCCAGAGCCAGACCAAGGACCTGTATCACAGCCAGTGCCAGAGCCAGATT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TGCCCTGTGATCTGAGACATTTGAACACTGAGCCAATGGAAATCTTCAGAAACTGTGTAAAGATTGAAGAAATC  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  ATGCCGAATGGTGACCCACTGTTGGCTGGCCAGAACACCGTGGATGAGGTTTACGTCTCCCGCCCCAGCCACTT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CTACACTGATGGACCCTTGATGCCTTCTGACTTCTAGGAACCACATTTCCTCTGTTCTTTTCATATCTCTTGCC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CTTCCTACTCCTCATAGCATGATATTGTTCTCCAAGGATGGGAATCAGGCATGTGTCCCTTCCAAGCTGTGTTA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ACTGTTCAAACTCAGGCCTGTGTGACTCCATTGGGGTGAGAGGTGAAAGCATAACATGGGTACAGAGGGGACAA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  CAATGAATCAGAACAGATGCTGAGCCATAGGTCTAAATAGGATCCTGGAGGCTGCCTGCTGTGCTGGGAGGTAT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  AGGGGTCCTGGGGGCAGGCCAGGGCAGTTGACAGGTACTTGGAGGGCTCAGGGCAGTGGCTTCTTTCCAGTATG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  GAAGGATTTCAACATTTTAATAGTTGGTTAGGCTAAACTGGTGCATACTGGCATTGGCCCTTGGTGGGGAGCAC  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  AGACACAGGATAGGACTCCATTTCTTTCTTCCATTCCTTCATGTCTAGGATAACTTGCTTTCTTCTTTCCTTTA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  CTCCTGGCTCAAGCCCTGAATTTCTTCTTTTCCTGCAGGGGTTGAGAGCTTTCTGCCTTAGCCTACCATGTGAA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  ACTCTACCCTGAAGAAAGGGATGGATAGGAAGTAGACCTCTTTTTCTTACCAGTCTCCTCCCCTACTCTGCCCC  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  TAAGCTGGCTGTACCTGTTCCTCCCCCATAAAATGATCCTGCCAATCTAATGTGAGTGTGAAGCTTTGCACACT  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  AGTTTATGCTACCTAGTCTCCACTTTCTCAATGCTTAGGAGACAGATCACTCCTGGAGGCTGGGGATGGTAGGA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  TTGCTGGGGATTTTTTTTTTTTTAAACAGGGTCTCACTCTGTTGCCCAGGCTAGAGTGCAATGGTGCAATCACA  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  GCTCACTGCAGCCTCAACCTCCTGGGTTCAAGCAATCCTCCTACCTCAGCCTCCTGGGTAGCTAGCACCATGGC  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  ATGCGCCACCATGCCCTATTTTTTTTTTTTAAAGACAGGGTCTTGCTATATTGCCCAGGCTGGTCTTGAACTGG  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  GCTCAAGTGATCCTCACGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTGTGCTTGGCCAGGA  3552

Query    1  ----------------------ATGGAGTCTCATTC-TGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGC  51
                                  |||||||.||..|| |||.|.||||.||||||||.|.|||..||||||||||
Sbjct 3553  TTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCTCTCTTGTTGTCCAGGCTGGAGTGCAATGGTGTGATCTCGGC  3626

Query   52  TCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAG---  122
            |||||||||||||.||||..||.|.|||||.||.|||||||||||.||||||..|||||||||||||||||   
Sbjct 3627  TCACTGCAACCTCCGCCTTCCGGGTTCAAGTGACTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGATTACAGATC  3700

Query  123  -GCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGC  195
             |||    |.|||||||||.|||||    ||||||||||||||||||||.||||||||.|||||||||.|||||
Sbjct 3701  TGCA----CCACCATGCCCAGCTAA----TTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGC  3766

Query  196  TGGTCTCGAACTCCTGACCTCAAG--------------------------------------------------  219
            ||||||||||||||||||||||||                                                  
Sbjct 3767  TGGTCTCGAACTCCTGACCTCAAGTGATCTGTCCACCTCGGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCC  3840

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3841  ACTGTTCCCAGCAGGAATTTCTTTTTTATAGTATTGGATAAAGTTTGGTGTTTTTACAGAGGAGAAGCAATGGG  3914

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3915  TCTTAGCTCTTTCTCTATTATGTTATCATCCTCCCTTTTTTGTACAATATGTTGTTTACCTGAAAGGAAGGTTT  3988

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3989  CTATTCGTTGGTTGTGGACCTGGACAAAGTCCAAGTCTGTGGAACTTAAAACCTTGAAGGTCTGTCATAGGACT  4062

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4063  CTGGACAATCTCACACCTTAGCTATTCCCAGGGAACCCCAGGGGGCAACTGACATTGCTCCAAGATGTTCTCCT  4136

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4137  GATGTAGCTTGAGATATAAAGGAAAGGCCCTGCACAGGTGGCTGTTTCTTGTCTGTTATGTCAGAGGAACAGTC  4210

Query  220  -------------------------------------------------------------  219
                                                                         
Sbjct 4211  CTGTTCAGAAAGGGGCTCTTCTGAGCAGAAATGGCTAATAAACTTTGTGCTGATCTGGAAA  4271

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