Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- XR_001748866.2
- Aligned Length:
- 5707
- Identities:
- 186
- Gaps:
- 5499
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCACTCCCGGCCTTAGTCGGGTGCGCGCGTGCAGGGCTGTTTCCGGCTTAGACTCAGTGGACCGGAATCTGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCGGGTGTACCTGGCTGAGTCTCTGTGGCCGCGGAGGCGCGGAGCTAAGCGGCTCGGATTATCCTGGGCAGAC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAGAGACTTGACCAGCTAAACACTTCCGTCGGTCCGGGGCGTGGACGGGGCCAGATCAGCCTCCTGCTCTCCCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGTCAGGGCCACGGAAAGGCACAAATCCATCCGTGCGACTCCTGGTACCCAGACCGGGAGGTTGTCTAGTCACG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CGCGGTCTGTGTTGGGCGAGAGCTGAGGAGCCGGCGTCCCTGCCAACGACTCGGCCCCGGGACGGTCAGGAGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGGGGCCCTGGTCCCGCACCTGTCTTCGGGCGGACGCATCCCTCACGGTCTCTCCGCAGCCCGCGGGTCCTGCC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCCGCAGGCAGCGCGCGAACGTGGGCGTGGGGATGGCCACCAGTTTCCGGACAGCTTCGTGCTGGCCTGTAACT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CACATGGGAGGTCTAAACTGGAAATACATAAAGACACCTTATTGTATTCGTGGAAGCTCAGAGTGTGACCAACT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGAACCCTCAAGAGGACCGAGATTTAAAGTAACCAGCTTGATAAGCACCTCAACGTAATAAGGGCACAGTAGTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCTTCATTTTTCTCATCACAGCCTCAGGCTTCCTGTCAGCCCTTCCCTAGTGCTCGTCGTGAGGAGAGCTGATG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATGCTCTGGTCACAGCCTTGTTTGTTATTGACTCTCAGTTACTTTCAGGTATGGGAAAGTTCAGTCCACACTCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CACTCCAAGCTCTTGTACCTCCCCTCATTCTAGCCTGCAGAGGGGAGATGGAGGAGGCTTGTCTGTATTCCCAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTCATTTACTTGTTGCCCTCCGACGGGGGCTCCTTCTGGGTTGGGGTGGGAAAATCAGTGGTTAGAGAAAAAGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CACAGAGTCTCCTGTTGTGCGGTGGTCAGTACCCAGAGTTATGACAGGCATCAGTGGGGCTTGGTTGGAGCCTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGACAGGGCTCTGCCCTGCAGTTCCATGGTGTATGTGATTCTTTCTCTCACTGCATGCAGACTCACCCAGAAGT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCACTCACTGCCTCTTCCCCTGGGGTCTCCCTCCCTGCAGGTAGTGCTGCTGAGGAGGAGCCTGCTAATGAGCT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CAAGTGTCAAGTTCGGGAATCTTCTGGGTGTTCCTTGGGCCCAGGGAAACAGTGCCCTGCCTGAGGGATTATTG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TCATTCAAGGATATATCTATGGAGTTCACCTGGGATGAATGGCAGCTACTGGATTCTACACAGAAGTACCTGTA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CAGAGATGTGATATTGGAAAACTATCATAACCTGATATCAGTGGGGTATCATGGTACCAAGCCTGACTTAATCT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCAAGTTGGAACAAGGAGAAGATCCATGGATAATAAATGCCAAAATTTCCAGGCAGAGCTGTCCAGATGGCTGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GAAGAATGGTACCAGAACAATCAAGATGAGCTTGAGAGTATTGAAAGAAGCTATGCTTGTAGTGTGTTGGGAAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ACTTAATCTGAGCAAAACCCATGATTCTTCAAGACAGAGACTCTATAACACACGTGGAAAAAGTTTGACACAAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ACTCAGCTCCAAGCAGAAGTTATTTAAGAAAGAATCCTGATAAGTTTCATGGTTATGAAGAACCATATTTTCTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AAGCATCAAAGAGCTCATAGCATAGAAAAAAACTGTGTGTGTAGTGAATGTGGGAAAGCTTTTCGTTGTAAGTC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ACAGCTCATTGTACATCTCAGAATTCATACAGGAGAGAGACCTTATGAATGCAGTAAATGTGAAAGAGCCTTCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GTGCCAAGTCAAACCTTAATGCTCATCAGAGAGTTCATACAGGAGAAAAACCCTACTCATGTAGTGAGTGCGAG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AAGGTCTTCTCTTTCAGGTCACAGCTCATTGTCCATCAGGAAATTCACACAGGAGGGAAACCCTATGGCTGCAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGAATGTGGGAAAGCCTACAGTTGGAAATCACAGCTTCTTTTACACCAGAGAAGTCACACAGGAGTGAAACCGT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ATGAATGCAGCGAATGTGGGAAAGCCTTTAGTTTGAAGTCTCCATTCGTTGTACACCAGAGAACTCATACAGGA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GTGAAACCCCATAAATGCAGTGAATGTGGGAAAGCCTTTAGGAGTAAGTCCTATCTCCTTGTTCACATCCGAAT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GCATACAGGAGAAAAACCCTATCAATGCAGTGATTGTGGGAAAGCCTTCAATATGAAGACACAACTCATTGTAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ATCAGGGAGTTCACACAGGAAATAATCCTTATCAATGCGGTGAATGTGGGAAAGCCTTTGGTAGGAAGGAACAG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTCACTGCACATCTGAGAGCTCATGCAGGAGAGAAGCCCTATGGATGCAGTGAATGTGGGAAGGCTTTCAGCAG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CAAGTCATACCTTGTTATACATAGGAGAACACACACCGGAGAGAGACCCTATGAATGTAGTTTGTGTGAGAGAG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CCTTTTGTGGAAAATCACAGCTGATTATACATCAGAGAACTCATTCAACTGAGAAGCCCTATGAATGCAATGAA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TGTGAAAAAGCCTACCCTAGGAAGGCATCACTTCAGATACACCAGAAAACTCATTCGGGAGAGAAACCTTTTAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ATGCAGTGAATGTGGAAAAGCCTTCACTCAGAAGTCATCTCTCAGTGAACATCAGAGAGTTCACACCGGAGAGA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AACCATGGAAATGCTCTGAATGTGGGAAATCCTTCTGTTGGAATTCAGGGCTTCGTATACATCGGAAGACTCAT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AAATGAGAAATCAGAATGATGCAATGTGAGAAACTGATGTTCAGGAGACTTCGGATAATATAGACAGGATTTAC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AAGCAGGAGGCCCTAAAATTACACTCATGTCAAAAATCAGAGAGGAGAGAGACCAACCATATTTGGGATGAGTG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TAAAAGCTTTCAGAAATAAGTTACAAATCTTTGTAGATGAAAATAATGGAAGGAATGTGGAGCAATAAATGTAT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CAAATGTTGTAGTATCATCATGAAGATTCAGAGAATTTACACTAGGAACACCTTATAAGTTGAATAAATTAAGG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AAGCATTTTCCCATTGAAAGTGTGTTCCATGGAAAGTCACATTCCAGATTTGAAGCTGTGTTTTTGTAAAATAA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AATCTTGGTATGAACAGTTGACTTCATGGTGGAGTATAAAGTTGTTTTTTTAAAAATATGTAAATAATGTTCAG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GAAAAACGCAGGGAACAGAGTCTTAAAGTTAATGGATATTTAATGTGACTTTCCTGAGTTAACACTGAATAGTA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TTTCTAAAATTTTTTGTACTTTATTTTTTAATGTAACTTGTTCTATCTATCTATATATATATTTGATAGTTTGT 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GGAATAATATCCCCCAGTATTTTCCATATTAAATGCTAATTATCTTTTGATTTCTTTTTCATAAGCAGATCTGG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CATTTATTACAGGGCTGCCGCTTAAGAGAACTCATTATAATGAACGTTTATTATATTTTGCAGTTCCATGCCTG 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 TTGTCCATTGATTGACATGAGCACCCCTGTTTTCTCTGGAGAAATACCTCCCCTCTCTGGGGTGCTTCCTGTGG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TAGTGTCTTTCAGGTATCCGTTCCACTAGCTACAGGAATATCTGGGAAGAACCTGAGGACTCAGCCTAGCAAGC 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 TCTTGTGATAGACTTTGAATAGCAGTATCTGCGAAGAACCTGAGGCCTCAGCCTAGCAAACTCTTCTGATAGAC 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TTTGAATAGGAATGTCTGGGAAGAACCTGAGGACTCAGCCTAGCAAACTCTTCTGATAGACTTTGAATAGGAGT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 ATCTGGGAAGAACCTGAGGACTCAGCCTAGCAAACTCTTCTGATAGACTTTGAATAGGAATGTCTGGGAAGAAC 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 CTGAGGACTCAGCCTAGCAAACTCTTCTGATAGACTTTGAATAGGAGTATCTGGGAAGAACCTGAGGACTCAGC 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 CTAGCAAACTCTTCTGATAGACTTTGCACTGCAGATGCTTCATTTAAGGCTATAGAGTAGATGTTGGCAATATA 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TAAAATTCAAACTTGAGTGTCCATAAATAACTGTTGTTGGAACATGGCTAAATATATTTGTGTATTATTTGACT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 GCTTTTGCACAGCCATGGCACAGTTGAGTAGTTGAGGTATAAAAAACCTGCCACCTCCTGATACAGATAGAACC 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 CCTTCCCTTTTCTGGGAAAATGTGGAATTTGCCTTGCAGGAGGAAGCTTATTCTGCCAGTTCCCCATGGCTTAT 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 TTTTACCAGTTTGGTAACAATAATCTACACTAAACATGCCCTGGGATGGGATTGCTCATTTAGGAAAATATGTA 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 GAATTCATAGAGCATTGCAGGAATGAGTAATGTATCAAAACTTCTCAGCATGACAACACCCAGGGCAACGTGAC 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 AAAACCCTGTCTACAAAAGTTTCTTAAAAGCTGGTTACAGCGGTGCACACCTGCAATCCCAGCTACTCAGGAGG 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TTGAGGCAGGAGGATCACTTGAGCCCAGGAGGTCAAGGATGCAGTGAGCTGCACTGTACTCCAGTCTGGGCAAC 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 AGTGAGACCCTGTCTCAAAAAAAAAGTTGGGGGAGGGGGTAGATACTTGTGAAATCCTTTGAGGGTGTTCAGTG 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 AAGGGCAATTACTTACAGCATATACTTGGTGCACTGACACCCAGCAGTGATGATGGTTTTGCTTTCTGTTTTTT 4736
Query 1 ----------------------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGC 40
|.|||||||..|||||||.|||||.|||||||||| |.||
Sbjct 4737 TTTTTGTTTTGTTTTGTTTTTTTTTTTTTTTGAGACGGAGTCTTGTTCTGTCACCCAGGCTGGAGTGAA-TTGC 4809
Query 41 ATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGG 114
|..|||||||||||||||||||||.|||||..|.|.||||||||||||||||||||.||||||..|||||||||
Sbjct 4810 ACAATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCATAGTAGCTGG 4883
Query 115 GATTACAGG-------CACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCAC 181
||||||||| ||| ||| |||.|||||| |||||||||||||||||||||.||||||||||
Sbjct 4884 GATTACAGGTGTGTGCCAC-CGC------GCCTGGCTAA---TTTTTGTATTTTTAGTAGAGACGGGGTTTCAC 4947
Query 182 CATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG------------------------------------ 219
||.|||||||||||||||||.|||.|||||||||||.|
Sbjct 4948 CACGTTGGCCAGGCTGGTCTTGAATTCCTGACCTCAGGTAATCCACCTGCCTCGGCCTCCCGAAGTGCCGGGAT 5021
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5022 TACAGGCGTGAGCCACCATGCCTGACCATGATGATGGTTTTAAAAGTTAGCTGTAGCAGCTAAGGCAAGACCAG 5095
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5096 ATCCAACACTGGCTTATGGCAAGGGGAAGAACAAAAGTCAGGAACTTTGCCATAATCTAGAAGAAAGAATGATA 5169
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5170 ATGCTTTGTGACATGCTGGATTGTATCCATTATGTGTTCCTAAGACCCTCAGCCCTCTCCCTCCACCAAGACCC 5243
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5244 AATAAAAGTGTGTTATTGAAAGTAGTAGCTACTGGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTG 5317
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5318 GGAGGCCAAGGTGGGTGGATCACAAGGTCGGGAGTTCGAGTTCAGCCTGGCCAATATGGTGAAATCCCGTCTCA 5391
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5392 ACTAAAAATACAAAAATTAGTCGGGCATGGTGGCGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGG 5465
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5466 AGAATCGCTGGAACCCGGGAGGTGGAGGTGGCAGTGAGCAGAGATTGCGCCATTGCACTCCAGCCTGGGTGACA 5539
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5540 GAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAGAAAAGAAAATGACAAACACATGTTCTGTGTATATGACAC 5613
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5614 AATCCTAACTGTGGCATGTATCTATGTCTTCACTTGCATCGGCCTCAATTATCAACTTGTGGCAAAAGAATAAG 5687
Query 220 --------- 219
Sbjct 5688 AAAGAGAAC 5696
