Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
XR_001751398.2
Aligned Length:
3832
Identities:
189
Gaps:
3616

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AATCTTGGCGGGAAGGCGCCGGCCGCTAAGAAGCCGAAAGATGTCCAGGTCGGGCGCGGCGGCTGAGAAGGCGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACTCCAGACAGCGACCCCAGATGAAGGTAAATGAATATAAAGAAAATCAAAACATCGCTTATGTGTCTCTGAGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCAGCACAGACTACAGTTTTAATAAAAACAGCTAAGGTCTATCTTGCCCCCTTTTCACTCAGTAATTACCAGCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGACCAGCTTATGTGCCCCAAATCCCTATCAGAAAAGAATTCTAACAATGAAGTGGCGTGTAAGAAGACTAAAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TAAAGAAAACTTGCAGAAGGATTATACCTCCAAAGATGAAAAACACATCTTCCAAGGCAGAATCCACGCTGCAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AATTCATCCTCAGCTGTTCATACTGAAAGTAACAAGCTACAACCCAAGAGAACGGCAGATGCGATGAATCTCAG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGTTGATGTGGAAAGTAGTCAGGATGGAGACAGTGATGAAGATACCACACCATCCCTGGATTTTTCGGGATTGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CACCCTACGAAAGGAAGAGACTGAAGAACATATCAGAAAACGCAGACTTTTTTGCTTCTCTTCAGTTGTCTGAG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TCTGCTGCAAGACTCCGTGAAATGATAGAGAAGAGACAGCCTCCTAAATCCAAAAGAAAGAAGCCTAAGAGAGA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AAATGGGATTGGATGTAGAAGGTCAATGCGATTACTAAAAGTTGATCCTTCGGGAGTTTCATTACCAGCAGCTC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CAACACCGCCGACATTAGTAGCAGATGAAACTCCTTTGTTACCTCCTGGGCCTTTAGAAATGACTTCTGAAAAT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CAAGAAGACAACAATGAACGATTTAAAGGATTTCTGCACACATGGGCAGGAATGAGCAAGCCAAGTAGTAAGAA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CACTGAGAAGGGATTATCTAGCATTAAAAGCTACAAAGCCAATTTAAATGGCATGGTCATTAGTGAAGATACCG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TTTACAAAGTTACCACAGGCCCAATATTCTCTATGGCTCTCCATCCATCAGAAACTAGAACTTTGGTAGCAGTT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GGGGCCAAATTTGGGCAAGTTGGACTTTGTGATTTGACCCAGCAACCTAAAGAAGATGGAGTTTATGTTTTTCA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TCCCCATAGTCAGCCAGTTAGCTGTCTTTACTTCTCACCCGCCAATCCGGCCCACATACTGTCACTGAGCTATG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ATGGCACGTTACGCTGTGGGGATTTTTCCAGGGCTATTTTTGAAGAGGTGTATAGAAATGAAAGAAGTAGCTTT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TCCTCCTTCGACTTCTTGGCAGAAGATGCCTCCACTTTAATAGTAGGACACTGGGATGGAAATATGTCACTGGT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GGATAGACGGACACCTGGAACTTCTTATGAGAAACTTACCAGTTCTTCTATGGGAAAAATAAGAACTGTTCATG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TCCACCCAGTGCATAGACAGTATTTTATCACTGCCGGATTGAGGGATACTCATATTTATGATGCAAGGCGATTG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AATTCCAGGAGAAGTCAGCCTTTGATTTCTTTGACTGAACATACAAAGAGCATTGCTTCCGCCTATTTTTCACC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TCTTACTGGTAACAGAGTGGTGACCACATGTGCTGATTGTAATCTGAGAATTTTTGACAGCAGCTGTATATCTT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CTAAGATTCCGCTCCTCACCACCATCAGGCACAACACTTTCACTGGGCGATGGCTGACCAGGTTCCAAGCCATG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TGGGATCCTAAACAAGAAGACTGTGTCATAGTTGGCAGCATGGCCCATCCACGACGGGTAGAAATCTTCCATGA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GACAGGAAAGAGGGTGCATTCGTTTGGTGGAGAATACCTTGTCTCTGTGTGTTCCATCAATGCCATGCACCCAA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CTCGGTATATTTTGGCTGGAGGTAATTCCAGCGGGAAGATACATGTTTTTATGAATGAAAAAAGCTGCTGAGTT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TTTGGTTTAGGAACATCAATTTGTTCAAATTGACCACTGTCTAAGGAGCCTAGTAATCGGCGTGCCTTAGTGTG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TTTATGTGGTAATGTGTTACATTTAGCAATTATAACATTGTTTTATTAATAAGACTATAAGAAGAGTGTACTTT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TAGTAAGGGAGAAGTCTTGGAGGGTTGCTTCTGCAGGACGGGGAGGGAATTTGAGGGGAGGCTGAGGTGCCGTC  2146

Query    1  -----------------------------ATGGAGTCTCATTC-TGTCGCCCAGACTGGAGTGAAGTGGCATGA  44
                                         |||||||.|...|| |||.||||||.||||||||.|.|.||..||
Sbjct 2147  AGGACTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATAGCGCGA  2220

Query   45  TCTCGGCTCACTGCAACCTCTGCCTCTCGAGG-TCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGAT  117
            |||.|||||||.||||||||.||||| |.||| ||||||||||||||||||||.|.||||..||||||||||||
Sbjct 2221  TCTTGGCTCACCGCAACCTCCGCCTC-CCAGGTTCAAGCGATTCTCCTGCCTCAGACTCCTAAGTAGCTGGGAT  2293

Query  118  TACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCC  191
            |||||||||..||.||||.|||.|||||  |||||||||||||||||||||||||||||||||.||||||||||
Sbjct 2294  TACAGGCACCTGCCACCACGCCTGGCTA--TTTTTTTGTATTTTTAGTAGAGATGGGGTTTCATCATGTTGGCC  2365

Query  192  AGGCTGGTCTCGAACTCCTGACCTCAAG----------------------------------------------  219
            |||||||||||||.||||||||||||.|                                              
Sbjct 2366  AGGCTGGTCTCGAGCTCCTGACCTCAGGTGATCTGCCCGCCTCGGCCTCCAAAAGTGCTGGAATTACAGGCGTG  2439

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2440  AGCCACCATGCCTGGCCATCAGAACTTGTAATCAAGACAGTATGTTGAGAAATTCTAACATTATAAATTACAAA  2513

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2514  GCTTTGACTATTAAAGTTTTTGTGATCTAATGATACAGTTTTGATTCTATAGTAATTTGTGGCTTATTTTATAG  2587

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2588  TTTATAATGAATACTTATTTCTAGACTCATACACTGGAAGGGGACCCGGAAAGGTAATGTAACTCAGTGATTTT  2661

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2662  AAAACTTGATTTTTTTAACTGAGAACTTTTTTTGCCCCCTGCCTGTAGGTTAAGTCTTACGTGAAATGCCAAGA  2735

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2736  TAATTGCTGAGCAGCTTTGGTTACCCAGGGCGGGGTCTGGGTCTGTCTGTACTTTGCCTTTACTCTAGATGGCT  2809

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2810  CCTGAGACACAGGCAGGACTCCCAAGCACCGGGTTGGGATCTGCCCTGGTCCCGGCATTCCAGTATAAGATTGC  2883

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2884  CTCAGACCTGTGTTTTTCAGACTGGGTTTTTGCTCTTCACATGAAATCAAGTTAGATGACAATGACTGGTGTTG  2957

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2958  AAAAAAATGAAAAGGAAAGAATTTGTAAAGAACAGAAAATATATTTGATACCATGGGTAATGGATAAAGAAGTT  3031

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3032  AAAGCTACTGCTTAGAATGAAGAAGGCCCCAGGCTTACCTGTCCCGATCTTTAAACTGTCCGAAGGAAATTCAA  3105

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3106  TAGCCTGTTAAGTGAATACCTTCATTCTTACTTGTATTTGGGGGAATATTATGAAATACTCACCACTTTTGGTA  3179

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3180  TTTTATGAAAATGTTTTCTTTTCAGAAGTTATGGTAATTTCAATGTGTTTGTTGTTGGGAGGGGAGCTGCCAAA  3253

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3254  TCAGTTACTAATATTACTGTGTGACATCTATCCAACTTTTTTCATTATTCTTCATTGCCAAATACTGAAAGACT  3327

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3328  TGTAAATGGCTTTGGCAATATGTTTGAATTCTAAGAGGAAATATTTTCCCATAATTGTATATCAGAGAAATATA  3401

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3402  GTGATATACAATTTCCTTGAAAACCAATTTCTAAATAATTTTCTTCTCTGTAATCTAAGTGTAAAAAGGTTTAG  3475

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3476  TTTTTTAATAGGTTTAGGTGTTTATAAGCAATAGTTCTCTATTTTCTAGTTGATATAAGTAGAAGAATTGACAA  3549

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3550  GTGAGATGGAAATGTTAATTTATAAAGGGAAAGAAAAGCTAGGTGAGGTTGAGTTATAATTAAACTGTTCAGGA  3623

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3624  AACATCGTAAAGGCTTTAGGCTCCCTTTTTCATTTCTATACCAATTAATCTCATGGGTTCTAGAGTGGTTAGTT  3697

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3698  CTACGGGAATTGTTTTTGTTTTTGTTTTTAAAGATGCTGAAAACTACTCTCAATCAAATTAGTACCATCATTTA  3771

Query  220  ----------------------------------------------------------  219
                                                                      
Sbjct 3772  AGCTTTGAATACTTGGCAGTAATTGCCTGGGCTCGTCAATAAATGTTAGCAAATTCTT  3829

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