Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- XR_001754566.1
- Aligned Length:
- 3745
- Identities:
- 193
- Gaps:
- 3527
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCCTCGGTGGACTACACTCCCCAGAGTCCTCGGGAGTCGTCCAGGTACACGCCCCAGAATATTGGTCATAGCGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCACCCGGGACTGCGCGACCCGGAATCCTTGGAAGGACTTCTCGGAAGGACTCCTCTCTGACAGTAGTGACAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AATATTCTTCACTGTGGCTTCTTCCATTGTGACCCAGACCAATCTACTTAAGGTCCGCAAATACTGCTCACGTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTCCCATGAAGTCCATCATGTGGGGAGTGTTTTCCTTGTAGGATTACGCTGCTCTCAAGTGCATACATGATGAT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTTTTTGTCCAAGCATCAGAGGTGATCCCAGCATCTTCACAGTACCAGCCTTTCCCCAAGATCCTCGCCAGAGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAAGGGTTACCCAGATCATCCTGCCACTGGTGAGTTGCTTTGTTGTCATGTACTGGGTGGACCTTATCATCTCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCCTCTTCATCCCTGTTATGGACGTATAACCCAGTCATCCTGAGCATCTAGAACCTTGTAGCCTGTGTCTATGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CACTCTCGTTCCATTGGTACAAATCCGCTCTGATAAAAGAATAGTTAATATTCTCCAAAAAATGGAATTAAAGT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCTATAATTTTTTAATGTGTTGGTGATGAAAAATATTTCTAAAAATTAGTCTCATTCTATAGTTAAATTGTTCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGTAGCCCCAGATTTAGCTTACTGAGTTTAAATAAAATGCGTGGAATTACACTTTTATTATATTTTTATGCTTC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TGAAACTGAGGCATCTAAGGACTATGTAGTTTCTTCAGTTCAATGTTCACCATAGATTGACATTTCAGATATCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGTCTTTTGCACTTTTATTTTTATGTTAACTTTGTACAAGAAAATGTTTCTCTCTTTTTGAAGTACATTCTTAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AAAATTTGTTTTGGTAATCAAATCTCTCAATGTTTTTACTTTTGAAAATATTTACTTACTCTGTTTATGAATGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TACTTTAGCTAAATATTCAATTCTAGCTTTTAAGCCATGCTTGCTCATTGTAACCTCCCTGACTAAAAAAAATT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATGTCAATTTGGATTTTAAATTTAATCTAGAATTCATTTTAAAGGGTTTTAAATGAAATTTATATGTGGCTAGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TACTGTTTTGGTAATACTCGATAGTTTCCCGCCTCTATTGGGATATTATTGACAAAAATTTTGTATATTTATGG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGCACAATATGATGTTTTGAGGTATAGACACGTGCACGCAGACACATAAACACACACACACACACACATTGTAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AATTACCAAAATCAAGCTTAATAACATGTCAATTACTTCTCATACAAGGGTATTTTTGGTGTATGGTGAGAACA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTTGAGATCTACTTCATTAATATAATTTACTTATACAATACATATTATTAATATAGTCTCTATGCTGTATACAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ATATTTATATTAACTTCTCTTTTGTTATTGTTGGAGACAGTTGTCTGTCTTTGTTCCCCAGGCTGGAGTGCAGT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGCATTATCATAGCTCACTGAAACGTCAAACTCCTGGGTTCAAATCATTCTCCCACCTCAGCCTCAAAAGTAGC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TAGAACTACAGGGGTGCACCACTATGCCAAGCTAATTTGTAGGAACAGAGTCTTGCTATGTTACCCAGGCTGGT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CTTGAACTCCTGGCCTCAAGCAATCCTCCTGCCTTAGCCTCCCAAAATACAGGGATTATAGGCATGAGCCACAT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GCCTAGCTTTATAACATTTTCTTTATTCATTTATGTGTTGATGGACATTTACATTGTTTTCATATCTTGTCTAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGTGAATATTGCTTCAAGAAACATAGGAGTGAAGATATCTCTTCAATATGTGATTTTATGTTCTTTGGATATTT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AACCATAGGTAGGATTCCTGAATCATATGATAGTTTTATTTTTAATTTTTTGATGAATAATCATGCTGTTTTCC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ATAATGGCTTTACCAATTTACATTCCCAGTGACAGTGTACAAGGTTCCTTTTCTCTCCATCATTGATAACATTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GTTTTCTTTTGAATTTTTAATAAACATTACCCTAACATGTGCTTGAGGTGCTATCTCATTTTGGTTTTGATTTG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CATTCTCCTGATGATTACTAATGGCTTCTTTGAAAAAGGATCCATTTAGATTATTTGGCTACTTTTAAAAAGAA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGTGTTATTTTTATTGTTATTTTTATTCAGAGGGGGTTATATTTTATGAATTTCTTACAGATTTTGAATGCTAA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CCCTTTATCTGATATTTGGCTTACAAGTATTTTTCTTCGGTTCTGTGGATTGCCTTTTAAATTGATTGACTGTC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTTTGCTATGCAGTAGAAACTTTTTAGTTTGATGTCGTTTCATTTTTTTTCTCCCTGGGCTTTTAGTGTCAAAT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACAAAAAATAATTATTGCCGCAAACAATGCCAAAGAATTTTCCCCAATGTTGTTTTCTAAAAGTTTTATGGTTT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CAGGTCCAATATTGAAGTCTTTAATCTCTTAAGTTAATTTTTGTGTATTCTGTAAAAGATGGGTTAAATTTTTT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTGCATGTGTATATCCAGTTTTCCCATCACCATTTATTGAACAGTGTATTCTTTCTTCACTGTATATTTATATA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TCTTTGTTGAAAATTAGTTGACTGTGTTCAGATGGATATTTCTGAGCTCTCTATTCAGTTTCATTGGTCTATGT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GTCTGTGTTAATGCCAGCATCATGCTGTTTTGATGACTGTAGCTTTGTTATATCATTTGAAATTAAGAAGTTTG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 ATGCCTTCAGCTTTGTTCTTGCTCAAAATTCTTTGGTTATTTTGGGTCTTTTCTAATTCCTTACAAACTTTAGA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AATTTTTTATTTTTCTGGAAAATGATATTTTAATTTTGATGGAGATTGCTTTAAATTTTTTTTTTTTTTTTTTG 2886
Query 1 --ATGGAGTCTCATTCTGTC-------GCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCT 65
|||||||||||.|.|||| ||||||.||||||||.||||...|||||||.|||||||||||||||.
Sbjct 2887 AGATGGAGTCTCACTGTGTCACCCAGGGCCCAGGCTGGAGTGCAGTGAGGTGATCTCAGCTCACTGCAACCTCC 2960
Query 66 GCCTCTCGAGG-TCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGC 138
.||| ||..|| ||||.|.||||.||||.|||.||||||.|||||||||||||||||||..|||||.|||||||
Sbjct 2961 ACCT-TCCTGGTTCAAACAATTCCCCTGACTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCACGCCACCATGC 3033
Query 139 CCGGCTAATTTTTTT-TGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTG 211
|.||||||||||||| |||.||||||||||||||||||||||||||||||||||||.||||||.||||||||||
Sbjct 3034 CTGGCTAATTTTTTTGTGTGTTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGACTGGTCACGAACTCCTG 3107
Query 212 ACCTCAAG------------------------------------------------------------------ 219
||||||||
Sbjct 3108 ACCTCAAGCAATCCACCCACCTCGGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACTGCACCCGGTGAGA 3181
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3182 TTGCTTTAAATCTTTATATCACTTTTAGTAGTATGAATGTTTTAATATTAATTTATCCAATCCATGAACACTAA 3255
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3256 GTTTTTTTTGTCTCTTCTATAATTGCCTTTGCCACTATTTTAGAGTTTTTATTGTACAAATCTTTTACCGTCTT 3329
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3330 AGTTATAAGTATTATTTTTTATGTTATGGCATATGGAATTTTCTTAATTTTTCCCATATATTTTGTTGTAAGTG 3403
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3404 TATAGAAATGCAATTTATTGTTTTGTACATTGATATAGTATCCTGCAACATTGCTGAATTAGTTTATTAGTTTT 3477
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3478 AAAAGTTTTTTTCCTGTAATGATGAGCACACGGGACTGTGTTTACACACTCATTAATATTCTGTTAACATATCA 3551
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3552 CAGTGCCTAAAAATGTGCTCTGTTGTATTTCTGCGGTGACCAATTTAATGGCATCTTTTAGTCCTAATTTTTTT 3625
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3626 TTCTTTTAAAATACTTTTGTCTGGTATTGTATAATGGTGTGTTACTTTTCAGTTGTGCTACACATTTATTTCCA 3699
Query 220 --------------------------------------------- 219
Sbjct 3700 GGCAGAGTTAGTCAAGCTTTCTAATAAAGTTATTTAATACCTTTA 3744
