Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
XR_001755380.2
Aligned Length:
5221
Identities:
188
Gaps:
5007

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGTGTCCAGGAGTCTCTCTGCTGCCAGCCCCGCCCAGACTCCAGGCAGGTTCTCGTTGCTATGGTGATCGCCGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGCAAGCTGGATGCTTGGACGCGCCGCTGCCAGTCCAACGCAGACCCCGCCCACGACGTCGACGATTCGTGTAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCGCAGGTCCCGCGTGGCTCTCGTTGCCATGGTGATCGCCGCCGCTGGCTCAGGCGGACCAGGCCGCGCGGAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCCCAGCTTTCACAGCCATCGCTGACTGGGAGCAGGAGACCCCTCCCCACTCTACTTCCACTGCCTGAGCTGTG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCATGCCTCACAGCCCAGTAAGGACTGTGGAAGAATGAGGTCCTCCCTGACACCTTTGGGGCCCCCTGTGAGCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GCGACCGTGTCATCGCCAGCTTCCCTAAGTGGTACACGCCGGAAGCCTGTTTGCAGCTCAGGGAGCACTTCCAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GGGCAGGTCAGCGCTGCCTGCCAACGCAGGAACACGGGGACTGTCGGGCTCAAACTCTCCAAGGTGGTGGTGGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGGCGATCTCTACGTGGGGAAGACCAGCCTCATCCACAGGTTTTGCAAGAATGTTTTTGATCGAGACTACAAGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCACCATTGGGGTGGACTTTGAAATTGAGCGCTTTGAGATTGCTGGGATTCCCTATAGCCTCCAGATCTGGGAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ACAGCTGGGCAGGAGAAGTTCAAGTGCATCGCATCTGCCTACTACCGGGGTGCCCAGGTGATCATCACGGCCTT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TGACCTCACTGACGTGCAGACCCTGGAGCATACCAGGCAGTGGTTGGAGGATGCTCTGAGGGAGAACGAGGCAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCTCCTGCTTCATCTTCCTCGTGGGAACCAAGAAGGACCTTCTGGGGCCGCATGTGAGCAGGCCGAAGCAGACG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CTGTGCACCTGGCCAGGGAGATGCAGGCCGAGTACTGGTCAGTGTCGGCCAAGACTGGCGAGAACGTGAAGGCA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TTCTTCAGCCGCGTAGCCGCCCTGGCATTCGAGCAGTCGGTGCTGCAGGACCTGGAGAGGCAGAGCAGTGCCCG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCTCCAGGTCGGCAATGGAGACCTAATCCAAATGGAAGGGAGTCCGCCCGAGACCCAGGAGAGCAAGAGGCCCT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CCAGCCTGGGCTGCTGCTAACTGGGGCCTGCGTGGAAGGCCTCCGCTCCCTGCACACACACGGACAGGAATTTC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CGTGACTGTGGTGTGGAGACTGGAGCCCAAGCTCTGCAGCGTGTCGCCCTCAAGCTGTAGGCCCATGTTCCAGT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CCCTCCACCCACCCACCGGGCTCAGCTCCAGGGCACAGTCACTTGTCCGTTGCAGGTTGGGCACTAGAAAAGGC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CCCCACTGGCTGCCTGGGAGCCCCACACCACCGGGCCAGTGCAGGCACTGTGGTGATCCCATAAAAGGCCAGTC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CATTTGCAGGGTCATCAGACAGTCACCTTTGGCCTCAAGAGGCCTCAGAACTGCAAACTCCTGCGTCGGTCTAT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  ACTACTCGGCCATGGCCCACATCAGCAGTCAACCCTGCACTCTTTCCCAGCGATCTTGGATGTGTCCCCAGGAT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CCGTCACAGTGTTCCAGGCAACCTGGACTTGTCAAAGTCAGCACCTGAAGGAGAGGCCACCTGCCATTCCCCCT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GGGAGTTTTCTGTTGTCAGCAGGACTTATGGTTCTGGGTCTCAGAGCTTCAGGCCTCACTGTCCTTCTGCCACG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GATGCTCAAGGTTCCTGGGCAGACCAGCACCTCTGGAGGACAATGGACAAAATGTCTCTTAGACCTGTTCTGGC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TGAAGGGCTATCTCTGGCACCTCTGAGATCCCTAGGTCCTGCCCTCCTGGTCCGTGGGCCAGGATGTGCAGAAC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AACCACTCAGGCCTTTCTGGCCCACCTGGACAGTGCATTTACCTGTGTGCTGCGGGAGGCAGACTGCACAGCTG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TCCTAGGGTAACTCACTCTGCAGCCCTTGAACATGGCACTGCCCTCCTCTGGCACTCATGCTGGGCCTGTGCCC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  ACTGCTGCCTCTCCATCCCTCTCTCATTGGCCTATACATCTCTTAGGACCTTTGTAATGGTGTCCATGCACCTT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TAGAGGACTTCAGAGGCCCTGCCAAGTCTAGCATGTTCCTGTCTCCAACACCGCCTCCTGCACATGCAGAGCAG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  ACAGAAATACCCCACACATTCCCCAGCCTCTCTGCCCAGTATGCTCATCCACAGGGTTTTCTCACTGCTATGAA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CCAGCCCCACAGCCCCAGGCCCCTGTCACCTGGCTATGCCCACTCATCCCACCCGTCTCGTGCTGTTGCTTCCC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GTAGATGGCGAGCACCTTGCAGGCAGCCTTCTGATCAGTACTGCTCTCCTAGGGCCTGGCACACTGCAGCTGCC  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CTGTAAATGTTCAGCTCAGCGATTGCCAAATACCAGTTAGGGAAGAACACTGGCATCTTTTTCTATTCATTCCC  2442

Query    1  -------------------------------------------------------ATGGAGTCTCATTC-TGTC  18
                                                                   |||||||.|||..| |||.
Sbjct 2443  CCTTCAACATATTTTTTGTAGTTTTTTATATAAATGACTTTTTTTTTTTTTTGAGATGGAGTTTCACCCTTGTT  2516

Query   19  GCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGG-TCAAGCGATTCTCCT  91
            ||||||.||||||||.|.||||.|.|||||||||||.||||||||||||||| |.||| |.|||||||||||||
Sbjct 2517  GCCCAGGCTGGAGTGCAATGGCGTAATCTCGGCTCAGTGCAACCTCTGCCTC-CCAGGTTGAAGCGATTCTCCT  2589

Query   92  GCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGT  165
            |||||.||||||..||||||||||||||||||||..|.|.||||||||.||||||    |||||||||||||||
Sbjct 2590  GCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCTGGCTAA----TTTTGTATTTTTAGT  2659

Query  166  AGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG--------------------  219
            ||||||||||||||.|||||||||.|||||||.|||||.||||||||.||||.|                    
Sbjct 2660  AGAGATGGGGTTTCTCCATGTTGGTCAGGCTGCTCTCGGACTCCTGATCTCAGGTGACCTGCCCACCTCGGCCT  2733

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2734  CCCGAAGTGCTGGGATTACAAGGGTGAGCCACCATGCCCGGCCATAAATGATTTTATTCATTTTTATGTTTTCT  2807

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2808  TTTGGGCGGCGGGATGGAGTCTCTGTCACCCAGGCTGGCGTGCAATGGCACGATCTTGGCTCACTGCAAGCTTC  2881

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2882  CCCTTCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACGTGTGACCATGCC  2955

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2956  GGGCTAATTTTTTATATTTTTAGTAGAGAGAGGTTTCACCGTGTTAGCCAGGATGGTCTCGATGATCTGACCTC  3029

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3030  GTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCCTGAGCCACCGCGTCCGGCCTCCATAAATG  3103

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3104  ACTTTTAAAGGGGTTGTATGTTTAGTGTGAACAAAGACAGTACAAAGCATATAAAATACAAGGTGAAAGCCCCC  3177

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3178  CCCCCGCCACATTAGCTGCGCCCCTGAAGTGTCTCCAGCAGAAGAGATGGATGAATGGAAGGACACACAGATGG  3251

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3252  ACAGAGAGCAGGAAAGACTGTTAGCTCTGCTAACAGTCAGGACTATTCCTTCTGGACTCTGTGCCTTTGCCTGC  3325

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3326  ACAGCTAGTGTTGATGGCTTGTTTGTTGTTTTCACCAGAGTGAGCTCCTTCTGGACATACTGCCTGGCAGCCTG  3399

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3400  CCTTCCTAGGGAGCTGGCGCCAAGGCCTCTCCCTGATGGCACACAAGGAGCCTCCTTCCTGTAGCAGCGCCCAG  3473

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3474  TTTTCATGTGGATGGATTGTAGTTCATTTGACCCTCCCCATCCGCGGGCCATCCGGCTTGTGTCCAGCTTTTAG  3547

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3548  CTCTTGCCAATGGTGCTGCAGTGGCCATTCTTGTAGTTATAGCTTTGCGTACTCAGGAAGGCCCTTCTCCCGAC  3621

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3622  TGCGGCCCCCAGCCTGGTCCACTAAATGCAGCCTGTGGTCGGGCAGACAGCATTGGGGTCCATTAGGAAGACCA  3695

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3696  GGTTTGCTGGGCATAAGCTTCACAGGACGGGAGAACCTGCCCATGGTGGACTGTCGTTCTCCACAGCTCCCTTC  3769

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3770  CCTTGCCCCTTCGGGCCTCCAGGATATGTTTGCGGGGGTGGGTGTGGTGTCCAGCTGTTACCAGCTTCTGAGCT  3843

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3844  AGAGCTGTACTGCCTCACGTACACCCCCACCTCTGTAAATGGTCCTTGATTAAATCGTCCTCATATTACCTCCT  3917

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3918  GCAATGTGCCAGCTGATTCCCACACACCCTGACTGACATAGTTGTGGCCTCTCGAACTTTGATATTTGGCCTGG  3991

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3992  GAGGACAGAAGAGTAAGGTCGCCACGGAAACGCAAGGGGCTCAGTTGTCCCCCCACCCCAAGTTGATGCAGCAT  4065

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4066  CTTCTCGGTCAGAATTGCTTCAGGGTGGTTTGCGCACCCTCACTTTGATGATTTAATGAAGACATTTCCTTCTT  4139

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4140  TCCCAGCATCGGGCAGTAAGTTTCCTGGGCAGAGGCACTTTCTGTTGGTCTGGTCTTGTGGGCCCAGGCAAGCA  4213

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4214  GCCCCCTGCAGCCAAGGTGCGGCAATGACCACAGTGACCGCGTCCAAGTGCTGCCGAAACGCCTTTTTCCTCTT  4287

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4288  CCCTGTTTCCCTGGACCCTTTCCTGCTCTCTGTCCATCTGTGTGTCCTTCCGTTCACCTGTCTCTTCTGCTGGA  4361

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4362  GACACGTACCTGAAGCAGGTCCTCTCCTGTCACTTCCTGGCTCCCCAGGGCTAGGTCCCAGGGTGCTCTCGCTC  4435

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4436  TGGCTTTCGAGGCTCCTCACCACCCAGCCCACCCCACCCCCACAGGCCCCTGTGCTCCAGTTTCATCCCTGGTC  4509

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4510  ACAATGCAGTCTGCAGATGCCAGACCCCTCTTCTGTGCCCAACGGCTGGGACACCCCTACTCCCAGAGAGGCCT  4583

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4584  CTGTGGACACCCCCACAGCTCTCGCAGCACTTGATACCTTGAGTGTGATTGGTCACATCTGGGCTTTCTCCCCC  4657

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4658  ACCCATCTGTGGAACCCCAAGAGCCAGGACAGTGACCTCATCACCTCTACTGTCTCCCCTAGCACCTCTGGGAG  4731

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4732  GAAGGGCCCACAGTAGGTGCTCAATAGATGTGTAAAGAAGGCAGGGAAGCAAGAAGGTTGCTCAAACAAGACCA  4805

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4806  TGTTCCCAGCAGACAGATTGCACTCTGACCCAGATGCCACCACACGAAACTTACACCTGCCTGGGGAACAATCC  4879

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4880  TGTGCTTGGCTCTCCTTGGTGGCCAGGGACAGTTGTGCCTCATCCCTCACTTGCAAACCCCAGTCCTGTCTGAC  4953

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4954  CCAGAGACCCTCACAGGGCATCAGCCAGTGAAGGCGGTTTGGGGCTGGAGGATATGTTCTGATCTTGGGAAGAG  5027

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5028  CTTGGTAGGAGCCAGCCACAGAAAGTTTCAGGGCAGAACTGAACAGGTCTCGGGAAGGACACTTCATGCCAGCT  5101

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5102  AGAGAGGCTCTGGGCACAGGAAAGAATTGGACTTCGGGCAGAAAAATGTTTGTGCTATTTAGTACTATGTAACA  5175

Query  220  -----------------------------------------  219
                                                     
Sbjct 5176  AATCACTCCAAAACTTCATTGCTTAAAGCAACAAGCATGTA  5216

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