Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
XR_001755381.2
Aligned Length:
5135
Identities:
188
Gaps:
4921

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGGTGTCCAGGAGTCTCTCTGCTGCCAGCCCCGCCCAGACTCCAGGCAGGTTCTCGTTGCTATGGTGATCGCCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGCAAGCTGGATGCTTGGACGCGCCGCTGCCAGTCCAACGCAGACCCCGCCCACGACGTCGACGATTCGTGTA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCCCGCAGGTCCCGCGTGGCTCTCGTTGCCATGGTGATCGCCGCCGCTGGCTCAGGCGGACCAGGCCGCGCGGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCCCCAGCTTTCACAGCCATCGCTGACTGGGAGCAGGAGACCCCTCCCCACTCTACTTCCACTGCCTGAGCTGT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCCATGCCTCACAGCCCAGTAAGGACTGTGGAAGAATGAGGTCCTCCCTGACACCTTTGGGGCCCCCTGTGAGC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CGCGACCGTGTCATCGCCAGCTTCCCTAAGTGGTACACGCCGGAAGCCTGTTTGCAGCTCAGGGAGCACTTCCA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CGGGCAGGTCAGCGCTGCCTGCCAACGCAGGAACACGGGGACTGTCGGGCTCAAACTCTCCAAGGTGGTGGTGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TTGGCGATCTCTACGTGGGGAAGACCAGCCTCATCCACAGGTTTTGCAAGAATGTTTTTGATCGAGACTACAAG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCCACCATTGGGGTGGACTTTGAAATTGAGCGCTTTGAGATTGCTGGGATTCCCTATAGCCTCCAGATCTGGGA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CACAGCTGGGCAGGAGAAGTTCAAGTGCATCGCATCTGCCTACTACCGGGGTGCCCAGGTGATCATCACGGCCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TTGACCTCACTGACGTGCAGACCCTGGAGCATACCAGGCAGTGGTTGGAGGATGCTCTGAGGGAGAACGAGGCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GGCTCCTGCTTCATCTTCCTCGTGGGAACCAAGAAGGACCTTCTGGCGAGAACGTGAAGGCATTCTTCAGCCGC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GTAGCCGCCCTGGCATTCGAGCAGTCGGTGCTGCAGGACCTGGAGAGGCAGAGCAGTGCCCGGCTCCAGGTCGG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CAATGGAGACCTAATCCAAATGGAAGGGAGTCCGCCCGAGACCCAGGAGAGCAAGAGGCCCTCCAGCCTGGGCT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCTGCTAACTGGGGCCTGCGTGGAAGGCCTCCGCTCCCTGCACACACACGGACAGGAATTTCCGTGACTGTGGT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GTGGAGACTGGAGCCCAAGCTCTGCAGCGTGTCGCCCTCAAGCTGTAGGCCCATGTTCCAGTCCCTCCACCCAC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CCACCGGGCTCAGCTCCAGGGCACAGTCACTTGTCCGTTGCAGGTTGGGCACTAGAAAAGGCCCCCACTGGCTG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CCTGGGAGCCCCACACCACCGGGCCAGTGCAGGCACTGTGGTGATCCCATAAAAGGCCAGTCCATTTGCAGGGT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CATCAGACAGTCACCTTTGGCCTCAAGAGGCCTCAGAACTGCAAACTCCTGCGTCGGTCTATACTACTCGGCCA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TGGCCCACATCAGCAGTCAACCCTGCACTCTTTCCCAGCGATCTTGGATGTGTCCCCAGGATCCGTCACAGTGT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TCCAGGCAACCTGGACTTGTCAAAGTCAGCACCTGAAGGAGAGGCCACCTGCCATTCCCCCTGGGAGTTTTCTG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TTGTCAGCAGGACTTATGGTTCTGGGTCTCAGAGCTTCAGGCCTCACTGTCCTTCTGCCACGGATGCTCAAGGT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCCTGGGCAGACCAGCACCTCTGGAGGACAATGGACAAAATGTCTCTTAGACCTGTTCTGGCTGAAGGGCTATC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TCTGGCACCTCTGAGATCCCTAGGTCCTGCCCTCCTGGTCCGTGGGCCAGGATGTGCAGAACAACCACTCAGGC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CTTTCTGGCCCACCTGGACAGTGCATTTACCTGTGTGCTGCGGGAGGCAGACTGCACAGCTGTCCTAGGGTAAC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TCACTCTGCAGCCCTTGAACATGGCACTGCCCTCCTCTGGCACTCATGCTGGGCCTGTGCCCACTGCTGCCTCT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CCATCCCTCTCTCATTGGCCTATACATCTCTTAGGACCTTTGTAATGGTGTCCATGCACCTTTAGAGGACTTCA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GAGGCCCTGCCAAGTCTAGCATGTTCCTGTCTCCAACACCGCCTCCTGCACATGCAGAGCAGACAGAAATACCC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CACACATTCCCCAGCCTCTCTGCCCAGTATGCTCATCCACAGGGTTTTCTCACTGCTATGAACCAGCCCCACAG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CCCCAGGCCCCTGTCACCTGGCTATGCCCACTCATCCCACCCGTCTCGTGCTGTTGCTTCCCGTAGATGGCGAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CACCTTGCAGGCAGCCTTCTGATCAGTACTGCTCTCCTAGGGCCTGGCACACTGCAGCTGCCCTGTAAATGTTC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AGCTCAGCGATTGCCAAATACCAGTTAGGGAAGAACACTGGCATCTTTTTCTATTCATTCCCCCTTCAACATAT  2368

Query    1  -------------------------------------------ATGGAGTCTCATTC-TGTCGCCCAGACTGGA  30
                                                       |||||||.|||..| |||.||||||.|||||
Sbjct 2369  TTTTTGTAGTTTTTTATATAAATGACTTTTTTTTTTTTTTGAGATGGAGTTTCACCCTTGTTGCCCAGGCTGGA  2442

Query   31  GTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGG-TCAAGCGATTCTCCTGCCTCGGCCTCC  103
            |||.|.||||.|.|||||||||||.||||||||||||||| |.||| |.||||||||||||||||||.||||||
Sbjct 2443  GTGCAATGGCGTAATCTCGGCTCAGTGCAACCTCTGCCTC-CCAGGTTGAAGCGATTCTCCTGCCTCAGCCTCC  2515

Query  104  GGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTT  177
            ..||||||||||||||||||||..|.|.||||||||.||||||    |||||||||||||||||||||||||||
Sbjct 2516  CAAGTAGCTGGGATTACAGGCATGCACCACCATGCCTGGCTAA----TTTTGTATTTTTAGTAGAGATGGGGTT  2585

Query  178  TCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG--------------------------------  219
            ||.|||||||||.|||||||.|||||.||||||||.||||.|                                
Sbjct 2586  TCTCCATGTTGGTCAGGCTGCTCTCGGACTCCTGATCTCAGGTGACCTGCCCACCTCGGCCTCCCGAAGTGCTG  2659

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2660  GGATTACAAGGGTGAGCCACCATGCCCGGCCATAAATGATTTTATTCATTTTTATGTTTTCTTTTGGGCGGCGG  2733

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2734  GATGGAGTCTCTGTCACCCAGGCTGGCGTGCAATGGCACGATCTTGGCTCACTGCAAGCTTCCCCTTCCGGGTT  2807

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2808  CATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACGTGTGACCATGCCGGGCTAATTTTT  2881

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2882  TATATTTTTAGTAGAGAGAGGTTTCACCGTGTTAGCCAGGATGGTCTCGATGATCTGACCTCGTGATCTGCCCG  2955

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2956  CCTCGGCCTCCCAAAGTGCTGGGATTACAGGCCTGAGCCACCGCGTCCGGCCTCCATAAATGACTTTTAAAGGG  3029

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3030  GTTGTATGTTTAGTGTGAACAAAGACAGTACAAAGCATATAAAATACAAGGTGAAAGCCCCCCCCCCGCCACAT  3103

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3104  TAGCTGCGCCCCTGAAGTGTCTCCAGCAGAAGAGATGGATGAATGGAAGGACACACAGATGGACAGAGAGCAGG  3177

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3178  AAAGACTGTTAGCTCTGCTAACAGTCAGGACTATTCCTTCTGGACTCTGTGCCTTTGCCTGCACAGCTAGTGTT  3251

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3252  GATGGCTTGTTTGTTGTTTTCACCAGAGTGAGCTCCTTCTGGACATACTGCCTGGCAGCCTGCCTTCCTAGGGA  3325

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3326  GCTGGCGCCAAGGCCTCTCCCTGATGGCACACAAGGAGCCTCCTTCCTGTAGCAGCGCCCAGTTTTCATGTGGA  3399

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3400  TGGATTGTAGTTCATTTGACCCTCCCCATCCGCGGGCCATCCGGCTTGTGTCCAGCTTTTAGCTCTTGCCAATG  3473

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3474  GTGCTGCAGTGGCCATTCTTGTAGTTATAGCTTTGCGTACTCAGGAAGGCCCTTCTCCCGACTGCGGCCCCCAG  3547

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3548  CCTGGTCCACTAAATGCAGCCTGTGGTCGGGCAGACAGCATTGGGGTCCATTAGGAAGACCAGGTTTGCTGGGC  3621

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3622  ATAAGCTTCACAGGACGGGAGAACCTGCCCATGGTGGACTGTCGTTCTCCACAGCTCCCTTCCCTTGCCCCTTC  3695

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3696  GGGCCTCCAGGATATGTTTGCGGGGGTGGGTGTGGTGTCCAGCTGTTACCAGCTTCTGAGCTAGAGCTGTACTG  3769

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3770  CCTCACGTACACCCCCACCTCTGTAAATGGTCCTTGATTAAATCGTCCTCATATTACCTCCTGCAATGTGCCAG  3843

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3844  CTGATTCCCACACACCCTGACTGACATAGTTGTGGCCTCTCGAACTTTGATATTTGGCCTGGGAGGACAGAAGA  3917

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3918  GTAAGGTCGCCACGGAAACGCAAGGGGCTCAGTTGTCCCCCCACCCCAAGTTGATGCAGCATCTTCTCGGTCAG  3991

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3992  AATTGCTTCAGGGTGGTTTGCGCACCCTCACTTTGATGATTTAATGAAGACATTTCCTTCTTTCCCAGCATCGG  4065

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4066  GCAGTAAGTTTCCTGGGCAGAGGCACTTTCTGTTGGTCTGGTCTTGTGGGCCCAGGCAAGCAGCCCCCTGCAGC  4139

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4140  CAAGGTGCGGCAATGACCACAGTGACCGCGTCCAAGTGCTGCCGAAACGCCTTTTTCCTCTTCCCTGTTTCCCT  4213

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4214  GGACCCTTTCCTGCTCTCTGTCCATCTGTGTGTCCTTCCGTTCACCTGTCTCTTCTGCTGGAGACACGTACCTG  4287

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4288  AAGCAGGTCCTCTCCTGTCACTTCCTGGCTCCCCAGGGCTAGGTCCCAGGGTGCTCTCGCTCTGGCTTTCGAGG  4361

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4362  CTCCTCACCACCCAGCCCACCCCACCCCCACAGGCCCCTGTGCTCCAGTTTCATCCCTGGTCACAATGCAGTCT  4435

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4436  GCAGATGCCAGACCCCTCTTCTGTGCCCAACGGCTGGGACACCCCTACTCCCAGAGAGGCCTCTGTGGACACCC  4509

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4510  CCACAGCTCTCGCAGCACTTGATACCTTGAGTGTGATTGGTCACATCTGGGCTTTCTCCCCCACCCATCTGTGG  4583

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4584  AACCCCAAGAGCCAGGACAGTGACCTCATCACCTCTACTGTCTCCCCTAGCACCTCTGGGAGGAAGGGCCCACA  4657

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4658  GTAGGTGCTCAATAGATGTGTAAAGAAGGCAGGGAAGCAAGAAGGTTGCTCAAACAAGACCATGTTCCCAGCAG  4731

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4732  ACAGATTGCACTCTGACCCAGATGCCACCACACGAAACTTACACCTGCCTGGGGAACAATCCTGTGCTTGGCTC  4805

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4806  TCCTTGGTGGCCAGGGACAGTTGTGCCTCATCCCTCACTTGCAAACCCCAGTCCTGTCTGACCCAGAGACCCTC  4879

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4880  ACAGGGCATCAGCCAGTGAAGGCGGTTTGGGGCTGGAGGATATGTTCTGATCTTGGGAAGAGCTTGGTAGGAGC  4953

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4954  CAGCCACAGAAAGTTTCAGGGCAGAACTGAACAGGTCTCGGGAAGGACACTTCATGCCAGCTAGAGAGGCTCTG  5027

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5028  GGCACAGGAAAGAATTGGACTTCGGGCAGAAAAATGTTTGTGCTATTTAGTACTATGTAACAAATCACTCCAAA  5101

Query  220  -----------------------------  219
                                         
Sbjct 5102  ACTTCATTGCTTAAAGCAACAAGCATGTA  5130

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