Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- XR_001756648.1
- Aligned Length:
- 5441
- Identities:
- 194
- Gaps:
- 5225
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTTGACCTCATGATATGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACCATGCCCAGCCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTTTTTATAAGGTTCATCCCATTATTGATATTCTCTAATTGGTGAGACATTGTTCCCACACTTTCGTTAGTTCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTTGACATGGTTCTTTTCTTTTTCTTGGGAGAGGGTCTCTCTGTCGCCCAAGCTGGAGTGCAGTGATGCAGTCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGGCTCACTGCAGCCTCAACTTCCTGGGCTGAAGTGATCCTCCTACCTCAGCATCCTGAGAGGCTGGGACCATA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGCAGCCAGCTAATTTTTTAAATTTTTTGTAGAGATGGGGGTCTCACCACATTTCCCAAGCTGCTCTCAAACTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTGGGCTCAAGCAATCCACGGGCCTCAGCTTCCCAGAGTGCTAGGATTATAGGTGTGAGCCACTGCACCAGGCC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TACACGTGGTTTCTCCCTTTGAAGTACTAGCCAGGCCTGACCATGCTTAGCTTCCGAGATCAGCAGGTTCCAGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CGGTGCAGCCTCAGATGCAGCATGTTTTAGGTCTTTGAACATATTTAAATGAGCTGACTGAACGTCTTTGTCTA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCAATTGCAGCATCGGGCTGGTCCCATTGGTGACTTTTCCCGTGTCTGGGTCGTCCTTTCGGTTTCCTTTCCAT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTCTCATAATTTGTTAAAACCTGGACATTTCACGGGCGATAATGTGGCAACTCCGGAAGTCAGATTCTCTTCCC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TGCCAAGGATGTGTTGTTGTTGTTGCCTGTTGGAGCTGTTTCTTTGCTGGGTGACTTTTCTGAACTAATTCTGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTAAGCATTAATGTCTCCATTCCCTGCGAGCTGTGGCCACTGAAGCCGCTCTTCAGTTACGGCAGTGGTCAGCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AATGACTGGTCAGAGAGTTCCTTAGGTGCCTGGAAGCGAAGTCTTTGCCGAGTGGGTCTCTCTCTGTGTGCCGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GCGTGGCTTCAGTGCTCGGCTAGGCAGTGCTCAACTTTCCCTTAGCCGTCACCTGCTGTCTGCACAGCACCTCA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GGTCAGTCACGGGTGAGGGCTCAGGGCCTTGCCGGCCTTCCTGAATATGGGCACAGCTGCAGACAGCCTTACCC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ACGTGCAGGGCACCTAGATTCCCAAGAAGGGGCAAGAGCTGTTCAAAACCACTACAAGCTGGACATGGTGGCTC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACACCTGTAGTGTCAGTGACTCAGAAGGCTGTAATGGGAGGATGACTTGAGGCCAGGAGTTTGAGACCTAGCAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GACCCCATCCCCCACCCAAAAAAACAAAAACAACAACAAAAACTCACTGTGGACCGCTCATGCCCCAGCTGCTG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTTTTTAACCCCAGCTGTTATCCATCACCACAGGCAGCTTCGATTTTCAATCATGGATCTGATGACTTTCAACA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AACTTTCCTGAGGAAAGTGCTGTTCCCACCAGAAGAGATCTCAGGACAAATGTAGACAGCCCTGGCAAGTGGGG 1480
Query 1 -------------------------------------------------------------------------A 1
|
Sbjct 1481 TCTCCCTGGGAGCTAGCAGACAGGTGAAAGACTGACAGTTCTTGGGGAATTAGGCTTTTCTTTTGTTTTGGAGA 1554
Query 2 TGGAGTCTCATTC-TGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGA 74
|||.||.||||.| |.||.||||||||||||||.|.|||..||||||||||||||||||||||||||||| |.|
Sbjct 1555 TGGCGTTTCATACTTATCACCCAGACTGGAGTGCAATGGTGTGATCTCGGCTCACTGCAACCTCTGCCTC-CCA 1627
Query 75 GG-TCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAAT 147
|| ||||||.|||||||||||||.||||||.||||||||||||||||||||||.|.|.||||.||||.|||||
Sbjct 1628 GGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCACCACCACGCCCAGCTAA- 1700
Query 148 TTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG-- 219
||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||..|||||||||.|
Sbjct 1701 -TTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACATCTGACCTCAGGTG 1773
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1774 ATCCACCCATCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCCTGCCCAGCCCAATTATAGATTT 1847
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1848 TTTAGGTTTAGGTGTTGACAGTAGCTCTCACCTCAGCCTGTTCTCTCTCCTTGTCATGCAGCCCACAGGGGAGA 1921
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1922 TGGTCAGGCCAGTGTGGGGGCTAATGAATAAATGCTACACTGTGCCCACTCAGGTCACGACCCCCAGGAGACCT 1995
Query 220 -------------------------------------------------------------------------- 219
Sbjct 1996 GGAGGACTGAATGCTGCTGCCCCCAAGGAGGAGGCTGCCGTCTTATCCCAGGAGGGAGAGCAGGTGAAGTCCCC 2069
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2070 AGGGGAGGAAGCACCTAGCCCCATTCCTGCTGAGCAGGAGGTGGCAGGTACCCCAGACTGGGAGGTAAGGACAG 2143
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2144 CCCGGGGCTTCGACTGAACGTCTCCAGCGTGGGTCCAACTGAGCAGCCATGGAGCACTGCAGAGTGGGAGGCAG 2217
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2218 CAGGGCAGGGAGGCAGTGCTGGAGGCTGGCTCAACCCCAAGACCAGCAGGCCAAGCTGCCATCCCAGGGGAGCG 2291
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2292 AGGACGTCTGTGCAGAGCTGAGAGGCAGCAGCCATGTGTGAACAGACTGGGCCTCATCCTGGCCCCACCGACTT 2365
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2366 TGTGTGGACAGAGCCTGTTTCCCTGTCTGTGCAACACAGAACCTGCCTGATCTCACTGCTGGATCCCTCTTCTT 2439
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2440 CCTGCCAGGAAAATAAAAAGGTTCAAAAGGAAGTTGCTGCGTATCCATCTGAGGCCTCTGAGGACAGCAAAGAG 2513
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2514 CAAAGGCCCTGGGACCGGGTCTACGTGCCCATGACAGAGCTCTGGCTGGACTGGTTCTGAGCCTCTAACACCCC 2587
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2588 CAAGACTCAGAACCGTGAAGAAAATCTTTCCAATAAATCCAAGAGTTGCTGCTGCTATAGGCCAGGCTGCCACC 2661
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2662 TTTCGGGGCCTCCGTCTTCAGACAAACCCAGCCTGGCTTCATCCACACTCCCTGTCCCCACAGCTGCAGGAACA 2735
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2736 GCACTTCCTGCCACCGAGCCGTGTGACCACAGTGGATTGTCTCTGGAGGGGCCCAAGGGGGCCCTGGCCACCCT 2809
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2810 TCTGACTGACTCGGTGCCAGGGGACAGACCAACGTCCCTCTCGTGCTGACAGCCGGGCCGCACCCTGGCATGAG 2883
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2884 GGCATTTACAGAAATGCTGGCGGAACTGCTGCCAGGGAGGCTGTAGGGTCCTCTGGCAAAAGAGGCCTCAGGTG 2957
Query 220 -------------------------------------------------------------------------- 219
Sbjct 2958 GCTCCTCAGAGTGTCTGTGGTTCTCTGTCCCAGGCTGTTCCCTAAGAAGGTCTGCCCAGGACTCAGGTCACGAC 3031
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3032 CCCCAGGAGACCTGGAGGACTGAATGCTGCTGCCCCCAAGGAGGAGGCTGCCGTCTTATCCCAGGAGGGAGAGC 3105
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3106 AGGTGAAGTCCCCAGGGGAGGAAGCACCTAGCCCCATTCCTGCTGAGCAGGAGGTGGCAGGTACCCCAGACTGG 3179
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3180 GAGGTAAGGACAGCCCGGGGCTTCGACTGAACGTCTCCAGCGTGGGTCCAACTGAGCAGCCATGGAGCACTGCA 3253
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3254 GAGTGGGAGGCAGCAGGGCAGGGAGGCAGTGCTGGAGGCTGGCTCAACCCCAAGACCAGCAGGCCAAGCTGCCA 3327
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3328 TCCCAGGGGAGCGAGGACGTCTGTGCAGAGCTGAGAGGCAGCAGCCATGTGTGAACAGACTGGGCCTCATCCTG 3401
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3402 GCCCCACCGACTTTGTGTGGACAGAGCCTGTTTCCCTGTCTGTGCAACACAGAACCTGCCTGATCTCACTGCTG 3475
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3476 GATCCCTCTTCTTCCTGCCAGGAAAATAAAAAGGTTCAAAAGGAAGTTGCTGCGTATCCATCTGAGGCCTCTGA 3549
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3550 GGACAGCAAAGAGCAAAGGCCCTGGGACCGGGTCTACGTGCCCATGACAGAGCTCTGGCTGGACTGGTTCTGAG 3623
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3624 CCTCTAACACCCCCAAGACTCAGAACCGTGAAGAAAATCTTTCCAATAAATCCAAGAGTTGCTGCTGCTATAGG 3697
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3698 CCAGGCTGCCACCTTTCGGGGCCTCCGTCTTCAGACAAACCCAGCCTGGCTTCATCCACACTCCCTGTCCCCAC 3771
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3772 AGCTGCAGGAACAGCACTTCCTGCCACCGAGCCGTGTGACCACAGTGGATTGTCTCTGGAGGGGCCCAAGGGGG 3845
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3846 CCCTGGCCACCCTTCTGACTGACTCGGTGCCAGGGGACAGACCAACGTCCCTCTCGTGCTGACAGCCGGGCCGC 3919
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3920 ACCCTGGCATGAGGGCATTTACAGAAATGCTGGCGGAACTGCTGCCAGGGAGGCTGTAGGGTCCTCTGGCAAAA 3993
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3994 GAGGCCTCAGGTGGCTCCTCAGAGTGTCTGTGGTTCTCTGTCCCAGGCTGTTCCCTAAGAAGGTCTGCCCAGGA 4067
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4068 CTCAGGTAATCATATGCTCATTAGAAACTCTTGGGCACTGCCTGTGTGCCCAGCCCAGCCCATTATGTCGGTGA 4141
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4142 GGACAGATGTGGAGGACAGCAGTCCCTGCCCTTGGTTGGGGCTCCAGGCCAGCAAGGGCCACAGCCCCAGAAGG 4215
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4216 CAGAGCAGGAAGACAGGACTCGGGGCAGGTGAAGCAGCCTTCTCGTTGGCAGAAGGGAAACAGAAGCCCGGGGT 4289
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4290 GGGGAAGGGTGGGGAAGGGTGGGCCCGGGGTCACACGGGGTAATGGCAGAGCAAGGACTAGGGTCAGGGTCTCT 4363
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4364 GGCTCTCAGCTGCCCATGCCACCTCCTCCTTCTCTGCCCGCCCCAGTGCCTTATGGGTCCAAGGTTGACTCCTG 4437
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4438 TCCCTAGGGCAGGCCTGTGGGCCCTGCCTGATCCCTACTGGGAGGATGGTACCTAGGGTTGGAGCCAAACAAGT 4511
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4512 GTCCTCCTCCAGCGCCAGCCTGGCCCTGAGTGCGAACTCGTCACTGGTCAGGGGTCCAGACAGCAGCATCCCTG 4585
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4586 AGGGCCCAGAGAGGTGGCCAGTCCTGTGGTGAGGTTGAGAGGTGTCAACGTGCTGGCGGTCCTCGCTCGCTCTC 4659
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4660 AGCGCCTCCTCGGCCTCAGCTTCTGCTCTGACCACACTTGAGGAGCCCTTCAGCCCAGCGCTGCACTGTGGGAG 4733
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4734 CCCCTCTCTGGACTGGTGGAGGCTGGAGCCGGCTCCGTCTGCTTGCGGGGAGGTATGGAGGGAGAGGCGTGTGC 4807
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4808 GGGAACCTGGGTTGCTCGCGGGCCAGCACCAGTTCTGGGTGGGCAGGGGCTCAGCGGGCCCTGCACTCGGAGCG 4881
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4882 GCCGGCTGGTGCCTCTGGCCCCAGGCAGTGAGGGGCTTAGCACCTGGGCCAGCAGCTGCAGAGGGGGCACCGGG 4955
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4956 TCCCCCAGTACTGCTGGCCTGCCGGCGCTCACCACACTTGAATTGTCGCCAGGCCTCAGTCACCTCCCCGCGGG 5029
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5030 GCAGGGCTCAGGACTTGCAGCCTGCCATGCCCAAGCCTCCCTACGGTGGGCTCCCTGCGAGGCCCAAGCCTCCC 5103
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5104 GGATGGGTGCCTCCCACTGCTCCACGGCACCTGGTCCCGTCCACTGCCCAAGGGCTGAGGAGTACAGGTGCCTG 5177
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5178 GTGTGGGACTAGCAGGCAGCTCTGCCTGTGGCCCTGGCATAGGATCCACTAGGCGAAGCTGGCTGGGCTCCTGA 5251
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5252 GTCAGGTGGGGACTTGGAGAACTTTTATGTCTAGCCAGAGGATTGTATATGCACCAATCAGCACTCTGTGTCTA 5325
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5326 GCTCCGGGTTCGTGCATGCACCAATTAGCACTCTGTATCTAGCTAATCTGGTGGGGACTTGGGGAACCTTTATT 5399
Query 220 --------------------------------------- 219
Sbjct 5400 TCTAGCTAAAAGATTGTAAATACACCAATCAGCACTCTG 5438
