Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
XR_001756660.1
Aligned Length:
4392
Identities:
194
Gaps:
4176

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTTGACCTCATGATATGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACCATGCCCAGCCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTTTTTATAAGGTTCATCCCATTATTGATATTCTCTAATTGGTGAGACATTGTTCCCACACTTTCGTTAGTTCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTTGACATGGTTCTTTTCTTTTTCTTGGGAGAGGGTCTCTCTGTCGCCCAAGCTGGAGTGCAGTGATGCAGTCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGGCTCACTGCAGCCTCAACTTCCTGGGCTGAAGTGATCCTCCTACCTCAGCATCCTGAGAGGCTGGGACCATA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGCAGCCAGCTAATTTTTTAAATTTTTTGTAGAGATGGGGGTCTCACCACATTTCCCAAGCTGCTCTCAAACTC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTGGGCTCAAGCAATCCACGGGCCTCAGCTTCCCAGAGTGCTAGGATTATAGGTGTGAGCCACTGCACCAGGCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TACACGTGGTTTCTCCCTTTGAAGTACTAGCCAGGCCTGACCATGCTTAGCTTCCGAGATCAGCAGGTTCCAGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CGGTGCAGCCTCAGATGCAGCATGTTTTAGGTCTTTGAACATATTTAAATGAGCTGACTGAACGTCTTTGTCTA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCAATTGCAGCATCGGGCTGGTCCCATTGGTGACTTTTCCCGTGTCTGGGTCGTCCTTTCGGTTTCCTTTCCAT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GTCTCATAATTTGTTAAAACCTGGACATTTCACGGGCGATAATGTGGCAACTCCGGAAGTCAGATTCTCTTCCC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TGCCAAGGATGTGTTGTTGTTGTTGCCTGTTGGAGCTGTTTCTTTGCTGGGTGACTTTTCTGAACTAATTCTGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CTAAGCATTAATGTCTCCATTCCCTGCGAGCTGTGGCCACTGAAGCCGCTCTTCAGTTACGGCAGTGGTCAGCT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AATGACTGGTCAGAGAGTTCCTTAGGTGCCTGGAAGCGAAGTCTTTGCCGAGTGGGTCTCTCTCTGTGTGCCGG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GCGTGGCTTCAGTGCTCGGCTAGGCAGTGCTCAACTTTCCCTTAGCCGTCACCTGCTGTCTGCACAGCACCTCA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GGTCAGTCACGGGTGAGGGCTCAGGGCCTTGCCGGCCTTCCTGAATATGGGCACAGCTGCAGACAGCCTTACCC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ACGTGCAGGGCACCTAGATTCCCAAGAAGGGGCAAGAGCTGTTCAAAACCACTACAAGCTGGACATGGTGGCTC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ACACCTGTAGTGTCAGTGACTCAGAAGGCTGTAATGGGAGGATGACTTGAGGCCAGGAGTTTGAGACCTAGCAA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GACCCCATCCCCCACCCAAAAAAACAAAAACAACAACAAAAACTCACTGTGGACCGCTCATGCCCCAGCTGCTG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CTTTTTAACCCCAGCTGTTATCCATCACCACAGGCAGCTTCGATTTTCAATCATGGATCTGATGACTTTCAACA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AACTTTCCTGAGGAAAGTGCTGTTCCCACCAGAAGAGATCTCAGGACAAATGTAGACAGCCCTGGCAAGTGGGG  1480

Query    1  -------------------------------------------------------------------------A  1
                                                                                     |
Sbjct 1481  TCTCCCTGGGAGCTAGCAGACAGGTGAAAGACTGACAGTTCTTGGGGAATTAGGCTTTTCTTTTGTTTTGGAGA  1554

Query    2  TGGAGTCTCATTC-TGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGA  74
            |||.||.||||.| |.||.||||||||||||||.|.|||..||||||||||||||||||||||||||||| |.|
Sbjct 1555  TGGCGTTTCATACTTATCACCCAGACTGGAGTGCAATGGTGTGATCTCGGCTCACTGCAACCTCTGCCTC-CCA  1627

Query   75  GG-TCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAAT  147
            || ||||||.|||||||||||||.||||||.||||||||||||||||||||||.|.|.||||.||||.||||| 
Sbjct 1628  GGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCACCACCACGCCCAGCTAA-  1700

Query  148  TTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG--  219
             ||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||..|||||||||.|  
Sbjct 1701  -TTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACATCTGACCTCAGGTG  1773

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1774  ATCCACCCATCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCCTGCCCAGCCCAATTATAGATTT  1847

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1848  TTTAGGTTTAGGTGTTGACAGTAGCTCTCACCTCAGCCTGTTCTCTCTCCTTGTCATGCAGCCCACAGGGGAGA  1921

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1922  TGGTCAGGCCAGTGTGGGGGCTAATGAATAAATGCTACACTGTGCCCACTCAGGTCACGACCCCCAGGAGACCT  1995

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1996  GGAGGACTGAATGCTGCTGCCCCCAAGGAGGAGGCTGCCGTCTTATCCCAGGAGGGAGAGCAGGTGAAGTCCCC  2069

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2070  AGGGGAGGAAGCACCTAGCCCCATTCCTGCTGAGCAGGAGGTGGCAGGTACCCCAGACTGGGAGGTAAGGACAG  2143

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2144  CCCGGGGCTTCGACTGAACGTCTCCAGCGTGGGTCCAACTGAGCAGCCATGGAGCACTGCAGAGTGGGAGGCAG  2217

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2218  CAGGGCAGGGAGGCAGTGCTGGAGGCTGGCTCAACCCCAAGACCAGCAGGCCAAGCTGCCATCCCAGGGGAGCG  2291

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2292  AGGACGTCTGTGCAGAGCTGAGAGGCAGCAGCCATGTGTGAACAGACTGGGCCTCATCCTGGCCCCACCGACTT  2365

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2366  TGTGTGGACAGAGCCTGTTTCCCTGTCTGTGCAACACAGAACCTGCCTGATCTCACTGCTGGATCCCTCTTCTT  2439

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2440  CCTGCCAGGAAAATAAAAAGGTTCAAAAGGAAGTTGCTGCGTATCCATCTGAGGCCTCTGAGGACAGCAAAGAG  2513

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2514  CAAAGGCCCTGGGACCGGGTCTACGTGCCCATGACAGAGCTCTGGCTGGACTGGTTCTGAGCCTCTAACACCCC  2587

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2588  CAAGACTCAGAACCGTGAAGAAAATCTTTCCAATAAATCCAAGAGTTGCTGCTGCTATAGGCCAGGCTGCCACC  2661

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2662  TTTCGGGGCCTCCGTCTTCAGACAAACCCAGCCTGGCTTCATCCACACTCCCTGTCCCCACAGCTGCAGGAACA  2735

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2736  GCACTTCCTGCCACCGAGCCGTGTGACCACAGTGGATTGTCTCTGGAGGGGCCCAAGGGGGCCCTGGCCACCCT  2809

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2810  TCTGACTGACTCGGTGCCAGGGGACAGACCAACGTCCCTCTCGTGCTGACAGCCGGGCCGCACCCTGGCATGAG  2883

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2884  GGCATTTACAGAAATGCTGGCGGAACTGCTGCCAGGGAGGCTGTAGGGTCCTCTGGCAAAAGAGGCCTCAGGTG  2957

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2958  GCTCCTCAGAGTGTCTGTGGTTCTCTGTCCCAGGCTGTTCCCTAAGAAGGTCTGCCCAGGACTCAGGTAATCAT  3031

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3032  ATGCTCATTAGAAACTCTTGGGCACTGCCTGTGTGCCCAGCCCAGCCCATTATGTCGGTGAGGACAGATGTGGA  3105

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3106  GGACAGCAGTCCCTGCCCTTGGTTGGGGCTCCAGGCCAGCAAGGGCCACAGCCCCAGAAGGCAGAGCAGGAAGA  3179

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3180  CAGGACTCGGGGCAGGTGAAGCAGCCTTCTCGTTGGCAGAAGGGAAACAGAAGCCCGGGGTGGGGAAGGGTGGG  3253

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3254  GAAGGGTGGGCCCGGGGTCACACGGGGTAATGGCAGAGCAAGGACTAGGGTCAGGGTCTCTGGCTCTCAGCTGC  3327

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3328  CCATGCCACCTCCTCCTTCTCTGCCCGCCCCAGTGCCTTATGGGTCCAAGGTTGACTCCTGTCCCTAGGGCAGG  3401

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3402  CCTGTGGGCCCTGCCTGATCCCTACTGGGAGGATGGTACCTAGGGTTGGAGCCAAACAAGTGTCCTCCTCCAGC  3475

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3476  GCCAGCCTGGCCCTGAGTGCGAACTCGTCACTGGTCAGGGGTCCAGACAGCAGCATCCCTGAGGGCCCAGAGAG  3549

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3550  GTGGCCAGTCCTGTGGTGAGGTTGAGAGGTGTCAACGTGCTGGCGGTCCTCGCTCGCTCTCAGCGCCTCCTCGG  3623

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3624  CCTCAGCTTCTGCTCTGACCACACTTGAGGAGCCCTTCAGCCCAGCGCTGCACTGTGGGAGCCCCTCTCTGGAC  3697

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3698  TGGTGGAGGCTGGAGCCGGCTCCGTCTGCTTGCGGGGAGGTATGGAGGGAGAGGCGTGTGCGGGAACCTGGGTT  3771

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3772  GCTCGCGGGCCAGCACCAGTTCTGGGTGGGCAGGGGCTCAGCGGGCCCTGCACTCGGAGCGGCCGGCTGGTGCC  3845

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3846  TCTGGCCCCAGGCAGTGAGGGGCTTAGCACCTGGGCCAGCAGCTGCAGAGGGGGCACCGGGTCCCCCAGTACTG  3919

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3920  CTGGCCTGCCGGCGCTCACCACACTTGAATTGTCGCCAGGCCTCAGTCACCTCCCCGCGGGGCAGGGCTCAGGA  3993

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3994  CTTGCAGCCTGCCATGCCCAAGCCTCCCTACGGTGGGCTCCCTGCGAGGCCCAAGCCTCCCGGATGGGTGCCTC  4067

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4068  CCACTGCTCCACGGCACCTGGTCCCGTCCACTGCCCAAGGGCTGAGGAGTACAGGTGCCTGGTGTGGGACTAGC  4141

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4142  AGGCAGCTCTGCCTGTGGCCCTGGCATAGGATCCACTAGGCGAAGCTGGCTGGGCTCCTGAGTCAGGTGGGGAC  4215

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4216  TTGGAGAACTTTTATGTCTAGCCAGAGGATTGTATATGCACCAATCAGCACTCTGTGTCTAGCTCCGGGTTCGT  4289

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4290  GCATGCACCAATTAGCACTCTGTATCTAGCTAATCTGGTGGGGACTTGGGGAACCTTTATTTCTAGCTAAAAGA  4363

Query  220  --------------------------  219
                                      
Sbjct 4364  TTGTAAATACACCAATCAGCACTCTG  4389

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