Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- XR_002956167.1
- Aligned Length:
- 5243
- Identities:
- 189
- Gaps:
- 5034
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCAGTCTGCGCAGGGACTGGCGGGACTGCGCGGCGGCAACAGCAGACATGTCGGGGGTCCGGGGCCTGTCGCGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTGCTGAGCGCTCGGCGCCTGGCGCTGGCCAAGGCGTGGCCAACAGTGTTGCAAACAGGAACCCGAGGTTTTCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTTCACTGTTGATGGGAACAAGAGGGCATCTGCTAAAGTTTCAGATTCCATTTCTGCTCAGTATCCAGTAGTGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATCATGAATTTGATGCAGTGGTGGTAGGCGCTGGAGGGGCAGGCTTGCGAGCTGCATTTGGCCTTTCTGAGGCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGGTTTAATACAGCATGTGTTACCAAGCTGTTTCCTACCAGGTCACACACTGTTGCAGCACAGGGAGGAATCAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGCTGCTCTGGGGAACATGGAGGAGGACAACTGGAGGTGGCATTTCTACGACACCGTGAAGGGCTCCGACTGGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGGGGGACCAGGATGCCATCCACTACATGACGGAGCAGGCCCCCGCCGCCGTGGTCGAGCTAGAAAATTATGGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATGCCGTTTAGCAGAACTGAAGATGGGAAGATTTATCAGCGTGCATTTGGTGGACAGAGCCTCAAGTTTGGAAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGGCGGGCAGGCCCATCGGTGCTGCTGTGTGGCTGATCGGACTGGCCACTCGCTATTGCACACCTTATATGGAA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GGTCTCTGCGATATGATACCAGCTATTTTGTGGAGTATTTTGCCTTGGATCTCCTGATGGAGAATGGGGAGTGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CGTGGTGTCATCGCACTGTGCATAGAGGACGGGTCCATCCATCGCATAAGAGCAAAGAACACTGTTGTTGCCAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGGAGGCTACGGGCGCACCTACTTCAGCTGCACGTCTGCCCACACCAGCACTGGCGACGGCACGGCCATGATCA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCAGGGCAGGCCTTCCTTGCCAGGACCTAGAGTTTGTTCAGTTCCACCCTACAGGCATATATGGTGCTGGTTGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTCATTACGGAAGGATGTCGTGGAGAGGGAGGCATTCTCATTAACAGTCAAGGCGAAAGGTTTATGGAGCGATA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CGCCCCTGTCGCGAAGGACCTGGCGTCTAGAGATGTGGTGTCTCGGTCCATGACTCTGGAGATCCGAGAAGGAA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GAGGCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAGCTGCACCACCTACCTCCAGAGCAGCTGGCCACGCGC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTGCCTGGCATTTCAGAGACAGCCATGATCTTCGCTGGCGTGGACGTCACGAAGGAGCCGATCCCTGTCCTCCC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CACCGTGCATTATAACATGGGCGGCATTCCCACCAACTACAAGGGGCAGGTCCTGAGGCACGTGAATGGCCAGG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ATCAGATTGTGCCCGGCCTGTACGCCTGTGGGGAGGCCGCCTGTGCCTCGGTACATGGTGCCAACCGCCTCGGG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GCAAACTCGCTCTTGGACCTGGTTGTCTTTGGTCGGGCATGTGCCCTGAGCATCGAAGAGTCATGCAGGCCTGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AGATAAAGTCCCTCCAATTAAACCAAACGCTGGGGAAGAATCTGTCATGAATCTTGACAAATTGAGATTTGCTG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ATGGAAGCATAAGAACATCGGAACTGCGACTCAGCATGCAGAAGTCAATGCAAAATCATGCTGCCGTGTTCCGT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GTGGGAAGCGTGTTGCAAGAAGGTTGTGGGAAAATCAGCAAGCTCTATGGAGACCTAAAGCACCTGAAGACGTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CGACCGGGGAATGGTCTGGAACACGGACCTGGTGGAGACCCTGGAGCTGCAGAACCTGATGCTGTGTGCGCTGC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AGACCATCTACGGAGCAGAGGCACGGAAGGAGTCACGGGGCGCGCATGCCAGGGAAGACTACAAGGTGGGCCTT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CTCACCACGCCCACCTGCACCTGCCTTTTCCTGCCACCTGGTGGGACTCAGCCCCACCCCTGCATTTTCTCTGC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ATTTTCTTTCGTTGCCCCAAAAGTAAATCCAAAAAATGCCTTTTTCCCCCCTGGTAACTTTGATCCCTGGGTTC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TCGCCATCTTCTGGATCACTGTGACCTTTTCCTTGCTTTGGGTCGGCATCCACTGATGCCAGCAGTGGCATCTC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CAAGCCAATGTGCTTTGCTGTTAGAAGGCCAAGGTTAGAAGTGCAGCTAGAGTGGCAAGACCAGGAAATAAATG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CCAGTTTATTAAATAACGAGTAAGCCATCATTTCAAGCCTGCCCTGTGGAGGAAATGCCAGTTTATTAAATAAC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GAGTAAGCCACCGTTTCAAACCTGCCCTGTGGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AAACCTGCCCTGTGGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCAAGCCTGCCCTGTGGAG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCAGACCTGCCCTGTGGTGGAAATGCCAGTTTATTA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AATAACGAGTAAGCCACTGTTTCAAACCTGCCCTGTGGAGGAAATGCCAGTTTATTAACGAGTAAGTCACTGTT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TCAAACCTGTCCTGTGGAGGAAATGCCAGTTTATTAACGAATAAGCCACCGTTTCAAACCTGCCCTGTGAAGGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AATGCCAGTTTATTAAATAAGGAGTAAGCCACCGTTTCAAGCCTGCCCTGTGGAGGAAATGCCCGTTTATTAAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TAACGAGTAAGCCACCGTTTCAAGCCTGCCCTGTGGAGGAAATGCCCGTTTATTAAATAAGGAGTAAGCCACCA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TTTCAAGCCTGCCCTGTGGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCAAGCCTGCCCTGT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCATTTCAAACCTGCCCTGTGGAGGAAATGCCAGTTT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ATTAACGAGTAAGTCACCGTTTCAAACCTGCCCTGTGGAGGAAATGCCAGTTTAGTAACGAGTAAGTCACCGTT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TTAAGCCTGTCCTGTGGAGGAAATGCCAGTTTATTAACGAGTAAGCCACCGTTTCAAACCTGCCCTGTGGAGGA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 AGTGCCAGTTTATTAAATAATGAGTAAGTCACCGTTTCAAGCCTGCCCTGTGGAGGAAATGCCAGTTTATTAAA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TAACGAGTAAGTCACCGTTTCATACCTGCCCTGTGGAGGAAATGCCAGTTTATTAACGAGTAAGCCACCGTTTC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AGACCTGCCCTGTGGAGGAAAATGCCAGTTTATTAACAAGTAAGTCACTGTTTCAGACCTGCCCTGTGGATGAA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 ATGCCAGTTTATTAATGAGTAAGTCACCATTTCAGACCTGCGCTGTGGAGGAAATGCCAGTTTATTAAATAAGG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 AGTAAGCCACCATTTCAGACCTGTCCTGTGGTTTGGAAAAGGTATTATAGAGCCTGCCCTGTGGTCACTTGTTC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TTCAGATGAACTGATTTTTGTGCAGAGCGCACGTGTTGGATTCTGCCTGGTAAGAGTTTTTCCCATATGATAGC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AAAAAACGACGGAAAGGGAAGCTTGGGATGCAAATGCAAGTTCAGGATAAACCACATCAGCAAAAGGACAAAGG 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CTCCACAAGGCAGGCGCACAGGCTGGTTCAGGACCGTGTGTAGGCGGCTGGTGGCAGCCTTTCCAGTCAGCTGA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 ACATGGTGAATGGGAAAATCATTTTTATTCACCATGAAATTTTACTGATTTACCCTCCACTAGAATATGCTGAT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GGCTGTGATCACTGCTCAGAACTTGCTCTTGTCTCCTTGTATGTATTAAGAGTTTCCTGCAAAGTATATGAATC 3774
Query 1 ------------------------------------------------------------ATGGAGTCTCATTC 14
|.|||.||||| |
Sbjct 3775 CGTGTTTGCCAGAATACAGAATAATAGTAAATTTATTATTTTTATTTTTATTTTTTTGAGAAGGAATCTCA--C 3846
Query 15 TGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCT 88
||||.|||||.||||||||.||||||.|||||||.|||||||||||||||||||||.||.|.|||||.||||||
Sbjct 3847 TGTCCCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCT 3920
Query 89 CCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACAC-GCAACCATGCCCGGCTAATTTTTTTTGTATTTT 161
||||||||.||||||..||.||||||||||||||.||||| ||.||||||| |||| |||||||||||
Sbjct 3921 CCTGCCTCAGCCTCCCAAGCAGCTGGGATTACAGACACACTGCCACCATGC----CTAA----TTTTGTATTTT 3986
Query 162 TAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG---------------- 219
.||||||||||||||||||||||.||||||.|||||||||||||||||||||||||||
Sbjct 3987 CAGTAGAGATGGGGTTTCACCATATTGGCCGGGCTGGTCTCGAACTCCTGACCTCAAGTGAACCACCCACCTCG 4060
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4061 GCCTCCCAAAGTGCTAGGGTTACAGGCATGAGCCACTGTGCCTGGCCAGTGCATAAATTTAGTTGGTCACAGTC 4134
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4135 AGTTTTAATTAGAATAGAAGCCAGGTGCAGTGCCTCACACCTGTAATCCCAGCATTTGGGAGGCTGAGGCAGGC 4208
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4209 CAATGACTTGAGCCCCAGAGTTGTAGACCAGCCTGGGCAACATGGCGAAACGTGTCTCTACAAAAACATAAAAA 4282
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4283 ATGAGCCAGGTGTGGTGGTAGCACAGGAGGCTGAGGCAGGAGGATTGATTGAGCCTGGGAAGTCAAGGCTCCGG 4356
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4357 CAAGCTGTGATCACACCACTGCACTCCAGCCCAGGTGACATAGCCAGACCCTGTCTCAAAAAAAAAATTTTTTT 4430
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4431 TTAATAAAAACAGGCTGAAAGAAAAGATTGAGGTAGTCTCCCAGCACATGGAGCAAAAAGACAAAGTATTTGAT 4504
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4505 AAACTCTTAGGTACATAAAGGATGCTTAAGGGAACATGCGGACATGGATTACTGTGGACTCACTGCTGGCTGCA 4578
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4579 CACCCCCTGGCCAGCCATGCGGCCTCCGTGGGTTCTGAACATGTTGATGGTGCCAACCTCCTGGGCTGAAGTGG 4652
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4653 AAATGGAATGAGTTCTAGGGCATCTGTCTCTTAGATCATGTTAATGTCTGCTGTGTTTTTTCTGTATTGCTCTG 4726
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4727 TTAGAGTAATAAGAAACGTGATGGTGTTTCTGGCCTCAGGTGCGGATTGATGAGTACGATTACTCCAAGCCCAT 4800
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4801 CCAGGGGCAACAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTTGGCACTG 4874
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4875 GGAAGGTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCGCCA 4948
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4949 GCCATTCGCTCCTACTGATGAGACAAGATGTGGTGATGACAGAATCAGCTTTTGTAATTATGTATAATAGCTCA 5022
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5023 TGCATGTGTCCATGTCATAACTGTCTTCATACGCTTCTGCACTCTGGGGAAGAAGGAGTACATTGAAGGGAGAT 5096
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5097 TGGCACCTAGTGGCTGGGAGCTTGCCAGGAACCCAGTGGCCAGGGAGCGTGGCACTTACCTTTGTCCCTTGCTT 5170
Query 220 --------------------------------------------------------------- 219
Sbjct 5171 CATTCTTGTGAGATGATAAAACTGGGCACAGCTCTTAAATAAAATATAAATGAACAAACTTTC 5233
