Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
XR_002956379.1
Aligned Length:
4019
Identities:
192
Gaps:
3804

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTATACATATATTTATTCTGCTATGTATATGTTCACATAGCAAAAAAATAAAATAAAATAAAAAGGAAAGAGCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AATCTACTATTGTGAATGTTAAAAGCAACAAGGAGAAAAATGAACAGCAGCAATAGTGCAGTGATATTTTTCTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAGATTTTACGCCACGGGTGCAAGAAGATAGTATAAGATTGTATTAATTTCACATACTTATTATCCAAAATAAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTGTAGAGTTTCCCCGCTAAGACATACATGTGACATTTGTCCTTTGACACGTTGCAGAATTAGGGCAACAGCCG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGAAGGTGAGCGTCTCCAGGAGCAGGTGCAGGCGCTGGGAGGCGGCTCGCGCACCAGAGGGCAGCAGCGCCCTG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCCAGGGCAGAGGCACCCCTGGAAGGCTCAGGAGCTCGGCTCCTGGTGAAGCCAGGACTTTAGGAATCGCATTT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCTCCCCACTGGCGTGAAGAGAAGTGCTAGCTCATCTATTTACATTCTAGGTTCAGAAAGGGGACCCCAAAATG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TTATGTGACATCCAAGAATCCAGTTCATCTTTCAATGTTAGGCAGAAAAATGAAACCTTATTCAAATGTTAACA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CTAATTCTAAATACAGTATTCTGAACATTTAGATGGACCGGCTGTGGGCACTGTGGTAATTATTAGTGGGCTAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AGGAGAAGAGGCCCCTGTGTACAGGGCGCATCCCAGGTGACCCTAGACTTGCTGCACAGGGCCAGCCATATCTC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTGAGTGGCCTTGGCCTAGTGGGCTGCCTCGGCTACCGCTTACCTACAGCTGGGGAGATGCAGACCCTCCCCTC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TGGTTAAAGAGAGGAGTCCGGCTGCCTCCCCTCCATGAAAGTGGTTTTCTCAGTATCTCTCCCCCTTCTTACAT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GGTGTGTTTGTGATTACTGCGTGCACATGGACACACGGCCACCCGCTGAAGAGCATCCCAGACTTTCTTTCACC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TGGCTGTAACCATGTGACTAAGTGAAGGCTCCCACCTTGGGAGCAGAAATGATTTCCACAGCTTTCCAGTTGTG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TCTTTAAGGCCACCTGCTTCCCGCATCCTGCTTCTTGTTGTCTAGAATGGAAATGGGCTGGAAGGAGGTACAAC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AGCTCCCTTGTGCTGAGGACAGCCTCGAGGTGAGGAGAACAGCACTCTGCCCATCATTCCTGACTGTCCACCTG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GACTCTCAATGAAGAGAGGAATCAGCCAAGAAGTAGAAAATAAATCGTTCCTGCCTTAGCTCTTATATGGATTT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ACCTAAATAAGGCATCAGGAATATCATGCTATTGGCAAATGCAACACAAGGAAGAAGATTGCAGCTGTGCATAC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TGAGTCATAAGCATGAAATCAGGTCACAGCAAACCACCCTGAGCTCTGCAAACACACCAGAGCGAGGGGCCTTC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GTCCGAATGCTGCAGCCTCTTTATTCTGTGAGATCACAAAGACTGAGTGCATCAGATTCTCAGAGCAGCCAGCG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GAATGTAGAATGCAGACCACCCCAAGCTCTGCAAACATGCCAGAGCGAGGGTGGCCTTCATCCGAATGCTGCAG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CCTCTTTATTCCGTGAAATCCCTGAGCACAAAGACCATGAACATGTCAGGTTCTCCACACAGCAGCCAGCAGAA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TGTAGAATGCATCAGGGCAGCTGTGCTGTGAGGCTGCAATGACTCAAATCATCTAATGGTCTGCACCTGAAAAG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CCGAAATGGGAATGAATGTTTGGAACATAACTTATTGGAAAGGCGGAAAGTATGTACAAAGAAATTCTCACATG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TTTCAGGTTAACTTTAATAGGAAAATATGCCCCACCTTCAGGGAAATAGATGTTAGGGGCTGGATGGTGTCCCC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TTAAAATTCATATGTCAAAGTCCCAACCCTCAGTATCTCAGAAAGTTGTGATATTTAGAGACTGGGATTTTAAA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CCGGTGATTAAGTTAAAAGGGCCTTTTCGGTGGGCTGTAATCCAATCTGACTAGTGTCCTTATAAGAAGCGTCA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GCTCACAGAGGAAAAGCCATTTGAGGCCTCAGGAGAAACCAACCCTGCCAACACCTTAACCAGCCTCTAAAAAT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GTGAGAAATAAATGTGTTGTTTAAGCCACTCAGTCTGTAGTATTTTGTTAGGGCAGCCCCAGCAAACTAATGTC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CTAGCAGACTATAGCATGTACACTGCGTTCATTGAGACCACATTCTCTGTACACATATCTCCAGAATGCCTGTA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ATTTGCACACATCACCACAAGTCTTAAAAGGATTTGAAAATATTGTGTTTTTCTGGCCTCATTTAAAATCCAGT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CTGTCTGTCCTGAGAAGCAAATCACGTACAGTTTGCAAGGTAATACTTAAGTACCTAAATGTTGAGATTTACAT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  ACAGTAAGATCTCACGTATCCAGAAATAATTGAATACTTGGAGGTTCTAACACATTGCCCCTATTAATAGACAA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TTCTGACAAGCGCAGATAGCTGATGTCCCCACCAAACATATAGAATAATGTTTGCAATGAGTGGAGAGGAGGAC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TAACGGCAGACACAGTTAAGGCTCAGGAAGAGACGGCCAGAGCCTGAGAGCAAAAAGATATGGGGAGAATCAAT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GGGAACCACTGAAGAACAGCCCCTTCTATCTTAATGTCTCCTGAGAGTGTCAGGTTACCATGGCACCTGTTTTG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  ATGCCCAAGACAGCAAGAAAAATGATGTAACCTAATGTACTACATTTAAGAAGAAATAAAGTATGTGGTATATT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TTGGAAACATTTTTATACATCTTAGCTAAAATGTTTAAAAGGTTATTGCTTAAATAAGTCAGCTTCATTTATCT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  GAACATTTAAATTATGCAGAGAAGCTCATCTCCCAGCTTTGGCAAATAAGCAAGATGTTTCTGTGCTAGTTTTC  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  AAGCATGAATCATCTTCATAGATCACATCAGCGCATTGATCACACCAAAAGAAGTGTCTGGGTAACCACTCCTT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TGCTTTGATTTCTAGAGTCAAACGCTAACAGATTTGAAGGACATGAGAAAGCCTGAATACCATCCTCTCCAAAC  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  AGTGGGCCCCTCAATCTGAACCTTGAAGCTGAAATACGATTCCTACTTCATGTACAAAACACATTTTTTATTTT  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  GCAAAGCCAAAGCCATGCTTTAAAAATACAGACTTTGAATCTTAAGACATTATTTTGCATTTTAAAGAGAGATA  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  TAGTTAAAGCTTACAAGAACAATATAAAGTTTCAAATAACACCATTGTCAGGTTTAAACATGTTGGTATGTTTA  3256

Query    1  ----------------------------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGA  34
                                                    ||||||||||..|.||||.|||||.||||||||.
Sbjct 3257  CATGACAGTTCTTTCCTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTTTGTCACCCAGGCTGGAGTGC  3330

Query   35  AGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGT  108
            |.|||||.||||||||||||||||||||||||||||..|.|.|||||||||||||.||||||.||||||..|||
Sbjct 3331  AATGGCACGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCTTGCCTCAGCCTCCCAAGT  3404

Query  109  AGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACC  182
            ||||||||||||||||||.|||.||||.|||.|||.||   ||||||||||||||||||||| ||||||||.||
Sbjct 3405  AGCTGGGATTACAGGCACCCGCCACCACGCCTGGCAAA---TTTTTGTATTTTTAGTAGAGA-GGGGTTTCGCC  3474

Query  183  ATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG-------------------------------------  219
            ||||||||||||||||||||.||||||||||||||||                                     
Sbjct 3475  ATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCACCCATCTTAGCTTCCCAAAATGCTGGGATT  3548

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3549  ACAGGTGTGAGCCACCATGCCTAGCCCATGACAGTACCTTCCTAACATGTGTTTGTATTTTTGTAACACAAGTT  3622

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3623  GCTATTTTTCTAATGTTCATATATTTACATAGCCCTTTAAAAACATGAGTTCCATGAACTTTCTATGTCATTGA  3696

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3697  AGAGAGCTGTTAAAATCTGATTCCATCACAAATTTCAGACCCCTTTAAAATAATTATCAGAAGCCAGCATAATT  3770

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3771  CCAGCTGTCCCCTAGCTAATCTGCAGCTCCTCATAACAAAAGTCTTCAGCCACACATTGCTCTTCAACCACATT  3844

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3845  AAAGAAACGGAACAAAACTTCTTTCTACATTGTCTCAGTAAAGTTGCTTTCTTTAAAAAAAAAAAAAAAGTATT  3918

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3919  CCATTTATTTAAAAAATTAAAAACATCTAACATTTTAAACTGTACAATAAACCCCAACTTCATTACGATTCATT  3992

Query  220  -----------------------  219
                                   
Sbjct 3993  AATCAAATCTCTCTTGAGTCCAT  4015

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