Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
XR_002956463.1
Aligned Length:
3863
Identities:
188
Gaps:
3648

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTCCCAGCAGGATGCCCCGGCTCTGCAGGAAGCTGAAGTGAGAGGCCCGGAGAGGGCCCAGCCCGCCCGGGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGGATGACCAAGGCCCGGCTGTTCCGGCTGTGGCTGGTGCTGGGGTCGGTGTTCATGATCCTGCTGATCATCGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTACTGGGACAGCGCAGGCGCCGCGCACTTCTACTTGCACACGTCCTTCTCTAGGCCGCACACGGGGCCGCCGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGCCCACGCCCGGGCCGGACAGGGACAGGGAGCTCACGGCCGACTCCGATGTCGACGAGTTTCTGGACAAGTTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTCAGTGCTGGCGTGAAGCAGAGCGACCTTCCCAGAAAGGAGACGGAGCAGCCGCCTGCGCCGGGGAGCATGGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGAGAGCGTGAGAGGCTACGACTGGTCCCCGCGCGACGCCCGGCGCAGCCCAGACCAGGGCCGGCAGCAGGCGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGCGGAGGAGCGTGCTGCGGGGCTTCTGCGCCAACTCCAGCCTGGCCTTCCCCACCAAGGAGCGCGCATTCGAC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GACATCCCCAACTCGGAGCTGAGCCACCTGATCGTGGACGACCGGCACGGGGCCATCTACTGCTACGTGCCCAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GGTGGCCTGCACCAACTGGAAGCGCGTGATGATCGTGCTGAGCGGAAGCCTGCTGCACCGCGGTGCGCCCTACC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GCGACCCGCTGCGCATCCCGCGCGAGCACGTGCACAACGCCAGCGCGCACCTGACCTTCAACAAGTTCTGGCGC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CGCTACGGGAAGCTCTCCCGCCACCTCATGAAGGTCAAGCTCAAGAAGTACACCAAGTTCCTCTTCGTGCGCGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CCCCTTCGTGCGCCTGATCTCCGCCTTCCGCAGCAAGTTCGAGCTGGAGAACGAGGAGTTCTACCGCAAGTTCG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCGTGCCCATGCTGCGGCTGTACGCCAACCACACCAGCCTGCCCGCCTCGGCGCGCGAGGCCTTCCGCGCTGGC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CTCAAGGTGTCCTTCGCCAACTTCATCCAGTACCTGCTGGACCCGCACACGGAGAAGCTGGCGCCCTTCAACGA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCACTGGCGGCAGGTGTACCGCCTCTGCCACCCGTGCCAGATCGACTACGACTTCGTGGGGAAGCTGGAGACTC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TGGACGAGGACGCCGCGCAGCTGCTGCAGCTACTCCAGGTGGACCGGCAGCTCCGCTTCCCCCCGAGCTACCGG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AACAGGACCGCCAGCAGCTGGGAGGAGGACTGGTTCGCCAAGATCCCCCTGGCCTGGAGGCAGCAGCTGTATAA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ACTCTACGAGGCCGACTTTGTTCTCTTCGGCTACCCCAAGCCCGAAAACCTCCTCCGAGACTGAAAGCTTTCGC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GTTGCTTTTTCTCGCGTGCCTGGAACCTGACGCACGCGCACTCCAGTTTTTTTATGACCTACGATTTTGCAATC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TGGGCTTCTTGTTCACTCCACTGCCTCTATCCATTGAGTACTGTATCGATATTGTTTTTTAAGATTAATATATT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TCAGAGGGTGTAGGAGTTGTGTTCCAAGTTTGTTCCTGCAAACCCTCCGATGAGGCCAGCTGCATTCATCGGGG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CCTGGATGGCCGCACCTCTCTCTCCCCGCCCTGTCTCCTGCACTCAGAGACGGAGTTTCACCATGTTAGCCAGG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATGCTCTGGATCTCCTGACCTCGTGATCCACCCACCTCGGCCTCCCAAACTGCTGGGATTACAGGCATGAGACA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CCACGCCCCGCCGAGTCCCTGCTTTTAATTCTTTGGGGCAGGGATCCCCAACCCCCTGGTGATGGACCAATACT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GGCCTGCGGCCCCTTAGGAACTGGACTGCACAGCAGGAGGTGAGCGGCAGATGGCATGGGAAAGTAGCACACAG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TCGGGACTCTGCAGCCGAGTTTGCCTCCTTGAATGCACACATAACACAGGAACAAAGACAGAGCTGCTTCCCTC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CTGTTGGGTCTCTGGCGGACAGTCAGTCTCATTTCCAGATGGGGAAAGGGAGACCCAGGCTGCGGTGACCCACT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GAGGCACAGGATCAGTGAGAACCCAGCCCTGGCTTTGCCCAGACCTCTCAAGGGCACTTCGTGGGACCATTGCC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GGCCGTTGTGGCATCTGTCCCTGGCCTTGCCCCCATCCGTCTCTGCACAGCCCAGGTGGGTCCGAGCCAGCCCC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AGGTCTCCAGGGTCCCAGCCCAGCCTCTAGAAGAGCCAGCAGCAGGGCTGGAAGGGAGAGCACATGCTGGGCCT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TGGGGCTGCCTTGGACCTCAGGCCGTTGACAAGGAAAAGCGGAGAGTTGGGAAAAAAGGACAAATAGCTGAGCG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CCAGCCGCAGTCTGGGGGACGGGAGCCTCGTGCGACTCTCGGAGTGCTGGCCAGATTGGCAGAGGGGAGGAGAG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AGGAAAAACCCAGGCTCTGAGGAAAAACCTCTCCAGCCCAGCGCGTGGCCTGGCATTAACCCACTGCAGCCCCA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GGAAGTGGTTCCACCCCAGGCAGCCAACAAGGCGGTGCCTGAACTATGTCTGTGGATGACGGAGCCACGACCTG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TCCCTCAGGGCTCAGCGCTGCGGCTATGTCCAGGGACCCCTGGCTGTGCCCACGTCGGGGCTTCCCGTTCCTTA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  CCTGCCATGAGAATGAGATGTCCAGGGACCTCCCTGCTCCAGCTGGGACCTGTGGGGCTTTGTCTGTTGTCCCG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AGCACCTTGGAGATGTCATTTCTAACATTTTAACCCAGGAATCCCCCCACCAAGGGACAGAGTGCAAGGACATG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  ATCGAACAGAAAAAGTTCTGGTACAAGATCAACCCCGTGGGGTGGTGAGTGCTGCAGCCCCGGGCCTCACATCC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TGCCGTCCCTGTGGGAGATTGGAGCGGTCCCAGTGCCCACCGCTGATTCTCTGGCTCCAGCAACCCCTCCAGGT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GGATCCGTCCCACGCAGCCTGGCCTGAAACACTGCCCAGCCACTGGGTCCAGTAAGACAGAGCCTCGAGTCATT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  CTGCCAAGAGGATCCAGAAACACAGACTTTTTCTGGGGTCCTGGAGGCTTCTGGCCCATGGGGAGCCCCTGGGT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  CCCAGCGATCCAGCCCTGATGTGCTGAGGGTGCAGGGCCCAGCTGCAGAGCAGAGGAGAGTGGCCCCCAGGGAC  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  CAGCAGCACGAAAGGCACACTGAGGCACACTGGCAGGCCTGGGCTGCAGAGAGCCTGAAGGTCATGGGGTAGCT  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  GGTGGAAGCAGGAAGACCCCATACAGCAGCGACCACTGAGGCTGGTGCTGCACTTTCTCAGGGAATTGAGTGTG  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  GGCTCCCACCATCCCGGCCACTGGCTTCCTCCAAAGCCTCCTCCTCTTACATCAGCAAACCTTCTGTTCGGTGA  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  CCCCCTCAGTGACCCTCTGTGCTTGCCTTCGTGGTCTTCCTCATGGAGGATTTCGGGTCAGCGTGGGGGTCAGA  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  GGTCATTTCCCATACCCCCTCAAAGGTACTTCTTGCTGTGGTCCCCACACTCTGACACCCTCTTCTGAAATGAA  3478

Query    1  ------------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGG  50
                                    |..||||||...||||||||||||.||||||||.|||||||..||||..|
Sbjct 3479  CACTTTTTTGTTGTTGTTGTTGAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACAATCTTAG  3552

Query   51  CTCACTGCAACCTCTGCCTCTCGAGG-TCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGG  123
            ||||||||||||||..|||| |.||| ||||||||||.||.||||||.||.|||.|||||||||||||||||||
Sbjct 3553  CTCACTGCAACCTCCACCTC-CCAGGTTCAAGCGATTTTCATGCCTCAGCTTCCCGAGTAGCTGGGATTACAGG  3625

Query  124  CACACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTG  197
            ||...||.||||.||||.|||||   |||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 3626  CATGTGCCACCAAGCCCAGCTAA---TTTTTGTATTTTTAGTAGAGATGAGGTTTCACCATGTTGGCCAGGCTG  3696

Query  198  GTCTCGAACTCCTGACCTCAAG----------------------------------------------------  219
            ||||||||||.|||||||||||                                                    
Sbjct 3697  GTCTCGAACTTCTGACCTCAAGTGATTCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAAGCATGAGCCAC  3770

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3771  TGCGCCCGGCCACAAACACTTTTTTTTTTTTAAACAAGTGAAAACAAGTTTATTAACAAAGTTAAGAAATAAAG  3844

Query  220  ---------------  219
                           
Sbjct 3845  AATGGCTATTCCATA  3859

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