Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
XR_002956669.1
Aligned Length:
5557
Identities:
188
Gaps:
5341

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AACTCTTGGCCTCAAGTGATTCTCCAGCCTTGGCCTCCTAAGGTACTAGGAGGCATGAGCCACCACAACTGGCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AATAGAGATCTTTTTGTTCTCCAATTTTGCCATGCTAATTAATAGAGATACTAGGTGTGGTGGACTAAATGGTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ACCAAAAAGACATGGCCTAATCCCCAGAACCCATTACTATTCCCATATATAGTAACAGACTGAATATTACCTTA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TAGGGCAAAATATGTAGTTAAGAATTTTAAGGGCCAGCATGGTGGCTCATGCCTGTAATCCCAGCATTTTGGGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGTAGAGGTGGGTGAATCACCTGAGGTCAGGAGTTCAAGCCCAGCCTGGCCAACATGGCGAAACCCCATCTCTA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTAAATATACAAAAATTAGCCAGGTGTGGTGGCCTGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGTAGCT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAAATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGAC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TCCATCTCAAAAAAAAAAAATTGAGAGGAGTGTTATCCTAGATTTTCCAGGTGAGCTCTAAATCCAGTAACAAG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TGTCTGTACAAGAATGAGGCAAAGAAAGATAACACAGATAGGAGGAAGCAATGCCACCATGACGACACAGACTG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GAATGACACCGTTAACAGCTGAGGATGCCAAGAACCACCAGAAACTGGACGAGGCAAAAACAGATTCTCCTCTA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GAGCCTCTAGAGAGAGTATAGCCCTGCTGACACCTTGATTTTCTTCTGACCTCCAGCACTGTGAAAGAATAAAC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TTCTGTTGTTTAAGCCACCCAGTTTACAGTAATTTGTTGTAGCAGTCATATTTTAAGAAGAAAACTGGGGGAAT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AAATTTGGTGTAAGGAAATGTTATAGGAAATCTAGGTCCACCTGCCTGGTTATGGTGACAAAGGGTGAATACTT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TCCTAAGTTAGCAACATCAGAAACATCTTTAAAGTCTTTTTCTACATGAATTTCCTTATTGGTTGCAGTGATTT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TAAAATATGTCCACAAATTATTTAATTATACCCCCTCCAAAAGTTGGAGCCTAATTCTCCTCCCTTTGAGTATG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GATTATATTTATTGGCTTACTTCTAACAATACAATGTGGCAGAAGTGACCGTTTGTGACTTCCAAAATTAGGAC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ATAAAAGACTTTGTGGCTTTCTCCTTGTTCTTTGACTTAGATTATTCGCTCTGGGAGAAGCCAGCTGTTGTGTC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ATAAGGATACTCAAGCTGCACTATGCAATGTCCACATGGCAAAAACTCAGTCCTCTTGCCAACAGGAAACCCAA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GAACTTGGGCTATCTGAGCACAGTCAGCCTTAAAATGACTGTAGTTCGGGGCCGGCCTTCAAGCGTCAGCAACG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CAAGACGGCAGCCACCATGGGCTCGGGAGTAAAAGTCCCTCACAATTTCTGACTGTTGGAAGAACTCAGAGAAG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GCCAGAAAGGAGTAGGAGATGGCACAGTTAGCTGAGGTCTAGAAGATGATGAAGACATGACAAAAGATGGACAG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GGATGATAATTGGGCCTCCAAGAACAATTTATGAAAACCAAATATACAGCCTTAAAATAGAATGTGGACCTAAA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TACCCACTAGCACCCCCCTTTGTAAGATTTGTAACAAAAATTAATGTAAATGGAGTTAATAGTTCTAATGGAGT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AGTGGACCCAAGAGCCATATCAGTGCTAGCAAAATGGCAGAATTCATATAGCATCAAAGTTGTCCTGCAAGAGC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TTCAGTGCCTATTGATGTCTAAAGAAAATATGAAACTCCCTCAGCCACCGGCAGGACAGTGTTACAGCAATTAA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TCAAAAAGAAAAACCACAGGCCCTTCCGCTTCCCCCCGCCCGATTCGATTTAAGCAGTCTTCGTTTTCCACAGT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AGTAAATTTTCTAGATACATCATGTAGACCTCAAAGTACTGGAAAGGAAGCTCCAATTCAAAGGAAATTTATCT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TAAGATACTGTAAATGATACTAATTATCCATTTGAAATATATAAGTTTTGCTATAACAAATCATCCTATCAAGT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GTAACCACTGTCCACGTAGTTGAACTTCTGGAATCGAGAAATTCTAATTAAATTGATTCCCATCATAACTAGTG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GGGCATATCTAACTCAACTGTGAAAAGAAACATCACACAATCACCTTGCTGATTACATGGCCTGGGGGTCTCTG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CCTTCTCCCCTTACCCTCCTGCCTCCCACCCTCCCTGCAACAGCCCTCTAGCTTGGCTTGTTAGAGTGGATGTG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AAGGTTTCAGGTTGCAGCCTGTGGGACTACTGCTAGGTGTGTGGGGTGCTTCACCTGCACCCCTGGTTTCTTTA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AGTCTTATGCACCTTCCAATCCGTCATCCTGTCCCCACACTCCTCCACTCCTGCCTTTGGCAGAAGCATAGGTT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GTAACCCCTCCGCTCCCCTCTAAGATTGGCCTTTGGTAAGGAATTCAGGGCTTTCCCAGTATCTTCTCTCCCCC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  ACCTTTATCGAGGGATGCTGTTTTTTCTTCCCTCCTCAAGTTGCTTTCTGCACCATCACCACTCAATACCTTCC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ATGACACTTCCTTGCTTTGGGCAGAAGCCATCAGGTAAGGTTAGAAAGTCTCTAACCTCCCTTGTTTAGTTTTG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GAACCATACTTATTCATTCTCCATCAGCCTGGGAAATGAATATTGGGTTTTCAGCCCTGCCACCCTCTGCTGTC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GTCAGCTGATGCGTTGTTTTTAGCTCAGGTTTTGATAAGGTGAAAAGGAAAGTCACCAGGGTTACTCAGACCTG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CCAGCTCTCGGAGTCCTTGGTGGTTGAAATTGGAGAAAGACCACAAGAAGACACTTGTAAGCACACGTGATCCC  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TCTGAATTGTTTTACTTCCTGTAATTGCTTTTGCTTTTAAAAACTGAAGAAGTTTTAAACAGGGCTTTCATTTG  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  GTCATCCTTGCAATCCATTGAGGTCTAGTTTGGAATCTGACAACTGGAACAAAAAGAACCTTGAATCCAGTGCG  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TGCCTTGGTTTTGGTGCTGCTGCTGCTTCTCAAGATCCTCAGCAGGGATTAAGAAAGAACCCAGTGTGCATAGC  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  AGATCCCTGAAATTGGCGGGCTTGACCTCCTGGGAAATTGGTGCGTCTTTCCACTTTCTGTTCAGGACCATTAA  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  ATGCTGAAATGTGGATGCATACCGAAATAAAAGTAATTCATTGTGTAAAAAAATAAAATAACTCTAGTTCAGGA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  TGACATCTTGACTGCAACCTCATGAGAGACCCTGAGCCAGAACCCCCTAGGTAAGCTGCTCTTAAATTCCTGAA  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  CCACAGCAGAAATTATGAGATAATATTTAGTGCTTTAATCTACCAGATTTTGAGGTAATTCCCCCCCTTTTTTT  3404

Query    1  ---------------------ATGGAGTCTCATTC-TGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCT  52
                                 |||||||.|..||| |.||.|||||.|||||.||.|.||||.|||||||.|||
Sbjct 3405  TTTTTTTTTTTTTTTTTTGAGATGGAGTTTTGTTCTTCTCACCCAGGCTGGAATGCAATGGCGTGATCTCAGCT  3478

Query   53  CACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCAC  126
            ||||||||||||||||||.||.|.||||||.|||||||||||||.||||||.|||||||||||||||||||..|
Sbjct 3479  CACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTCC  3552

Query  127  ACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTC  200
            .|.|.|||||||.|.|||||   |||||.|||||||||||||||.|||||||||||||||||||||||||||||
Sbjct 3553  CCACCACCATGCTCAGCTAA---TTTTTATATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTC  3623

Query  201  TCGAACTCCTGACCTCAAG-------------------------------------------------------  219
            ||||||||||||.||||.|                                                       
Sbjct 3624  TCGAACTCCTGAGCTCAGGTAATCCATCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGC  3697

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3698  ACCTGTCCTTGAGGTAATTCTTAACACAAATAACTAATACACTGATGCACCTTCTAAATAAAGTGCCATTTTTG  3771

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3772  TTCAGGAGGCCTTAGCATAACAAATATCACAATCCTATGAATCTCTAGAAGTTGTCATGTACTAGATGATTACT  3845

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3846  GACATCAACACAAGTTATAATACCTTAAGAATGATACCATTCATTCAGTACTTCATATGTATATGAATTTTACC  3919

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3920  AGCACAGAAACTTAGCCTAGGAATCTGTCTAGTTCTCCTATTATTAACATCATACATGAGTATGGTACATTTGT  3993

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3994  AATGATCAATGAGCAAATATCAATCCATTATTACTAACTAAATTCATACTTTATTCAAATTTCCTTACTTTCTC  4067

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4068  TTTATTCTCTAAAGTTCTGTGAATCCATGGTCCTATATCTGCACTAATTCACTTGTGTTTTTTCTATATACTTC  4141

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4142  TGCATCTAAAATACTATTTTTACTAGATTTTTTACCAGACTAATTTCATTGAATGTCTTCCAAAGTATGAACAC  4215

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4216  TTTTATTTTAAAGTTTTCTTAATATCCTCATGGTAACATCAAAATTTAAGGAAATCTGCTTGTCATCAAAAAGG  4289

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4290  GTTTTGGTAATGCTTTGTTAGATTTGCAAACTTTTCATATTATTTGCTCTTACATCACTTCCATGCTATTTCCT  4363

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4364  TTGCTTTTAGTGTATTAATTTTGTTCAAAATGGTAAAATAAAAGAAATATTTATACATTATATTTTTAAGTATC  4437

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4438  TATTTCCTTAATCTAAGGTAAACTTTTCTCAAGGCATTTTAACTTAACAGGATATTACATAGAAAAAAATAGGG  4511

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4512  GAATAATATCTGACACACTTCAAATGTTCTTTGAACTTTGTTAGTTTAGTGTCAGTTATTGACTGCTTGAATTG  4585

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4586  GAGAACCCCCTGCTCATATCAGTAACAGCTAGTCAAAATTATCAAGAACATTAAGAACACATCACAGAAATCAC  4659

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4660  TGTCATCAGTTATAGATAGAAAGGAAGATTGCACAGTGAGATGATGTATTCAATAGAAGGTTGTGTGTAGTAAA  4733

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4734  AATAAGAATTGTAAATGTAAGTCAACAGTAAATCCAAAAGCCATGTCTTTCCAGGGAAATCTAAAAACTATGTT  4807

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4808  TCCTACTTTCAAAATCCTTTCATCATTACAAGAGTTATTCTTTTCTGGTTCAAAAATCTTGCCTACCTCCTTTT  4881

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4882  AAAAGTTATTCTTTAAAACATTAGGCCAGATGAGCTAATTTCAGACAGCTTATTTACCTGCTCATGGATTTATA  4955

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4956  TGCCACCTGCTTTTGCTTTTTCTACAGATGCAAAGTCAACCTCTGGGGCAAAATTCCACCTTTCTCTTTCTGCC  5029

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5030  ACACAAGTGGTAAATAACATGACCCAATAAATTTTAGCATTTCCCCAAATGTGTAGGATACAAAAAATGTATTC  5103

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5104  ATTCATGTGAGATATAAAAATGTACACTCACACTTCTGAAATCAACAGCCAGCCATTTCACACTTGGGCCAAAG  5177

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5178  GCAAACAAACATAATTCTCACTGGCAGCTGGACAACATTCCGAGCTGCCACCACATTAATTAACTCACCTCAAT  5251

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5252  CAGATTCCACTTCAACTTGCACAGCTTGCTGCCAAGAAGCCTAGCAATAAATTGTTAGGTTAAATACTGAACAA  5325

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5326  GGTAGGGAAATACCATATGGTATGTTGTTATAGAGGCTGGGATATTCTTGTTTAACACTAGTAGCAGGGTTTTC  5399

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5400  CATTTACTTTTTATTGTCTCTTGTGATTTGAGAAAAATGAGTATATGCTCTTGTTGATAAATGAACTTGCATGT  5473

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5474  CTTATTGTGAAGGGGAATGGGATGGTAACAAGTTAACAAAACACCTTTGTCCACAAGCTTCTATAGTTGATATT  5547

Query  220  -------  219
                   
Sbjct 5548  CCCTAAA  5554

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