Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- XR_002957763.1
- Aligned Length:
- 4966
- Identities:
- 190
- Gaps:
- 4748
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGTCTGTGGCAGCATCTGTGTGTGTATGTGAGACTGAAAGGAGGTGGGAGATGAGGAGGGGAAGGGAATCAGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCAGCAGCAACAGGCTCTATTCTTCAGTTCTGCTAAAAGAAAGAGGAAGAGAGGAAGAAAAAAATAGACACTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTTTTTTTTCTCACGACACACCCTGAAGGAGAAGGCGCCTAGGCGCTGTCCGTAGTGCTGAAATGGTGCGTGGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGACCTGTCTCCCCAACACAAGCTAGAAGACAACAAAATAGCAGCCAGGAAACGCTCTGATAAAGCTCTAGAT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGCTGCCAGGCCGAGCTCAAGGGAGCAGAACTAAGTTACATGATTCTGCTGCGGATGTATAAGCACCACTCCAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TAATTTATTATCACGGTTGGAGACTTTGACTTGTCACTTTATGACTTGAAATATGGCTCCATGGTAAATGCCCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TAAAGCTGATTTTTAAAATCTGGATATTACAGTTCTAATTCTCACTTAGTTTAAAAGGTAGAATAGGCTTCTTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TTTCATAGATCATTTGTGTGAATGTTGATTTGTTATGTCATTGACATCATACACACATGCTTACATTTTGAAGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTGCTAGCGTTTCCCATTAATGCTTCTGAATTGATGCCAAAGGAAAGCATTGATTATAAATTAGGTTCCTTGGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATTAGTTGGTGCATGACCCTGACCCTTTTCAAGCTATATGAAAGGTAATGATGCTCTCAAAAGCCTGCAAAATG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCTTATTCAGGAAAGCATAATGGATTAAAAATCCATTAGGTTCCACTTTCTTTGCTAGATGCTGAGATACAAAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATAAATGAGATTTGGTCTCTGCCCTCGAGGAGATACGTGGCAAAATAATATGGTAAGTTCTACAAAGTTCTATA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CAAACACAGATTAATATGCTATTCATGTTTTATTAGCCATTGCCAAAGAAGGGATGAAGAACTGCAAAAAGATA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAACACAGAATACTTGTACTTCAGGTCCTTGCCAATATCTACTGCCCAACTTTTACAAAAAAAATTGCTGAAAG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCATGAAATATATGAATGCCTTTCTAAAGCACATGTGGATAATCTATACTTCTGGAGCATCTATGATTTATTTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CAGAACAATCCAAGTTATTAGAAAGGTAAATATGTTGGTGACATTGTTTAGAAGTTCCTCAAGCAGAATTGCCT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TTACTATGCTTTGACATTATGCTCTCAGCTTATATACAGTAATTCTATGTGAAACAGTAGCCAGCTTACACAAC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTGCTCTATATCTACTACAGAGCTGTTACTAAAGTGTTGGTCAACATATAACTTACTATTTCTTATATAAAGAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCCCAAGAAATTTAGATTTCATAGATATATCCCCAAAAGCATTTCTTTCAATACCAGTTTAATGAATTGAACTT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCATACCTCACTTAAATCAACCCAGGGTAAAGTGGTATGTTCTGTTCTTACACACAATGAAAATCATGTAACTA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ATTAAAGTTAGCATTTATTTTAGCTACTAGGGATGCCAGAGTCAAATTAACAGCTGAAAATGAATAACTACATA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AGACCTTAAGCCTTTTATATCTTTTCTTTTTTTTTAATCACCTTAACTACTGCAATTTTGGTTTCTTAGGTAAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GATAATATTATTTTCTTTTAATTATTTGTTTTAATGTGTGACCTCATGTAAATGTCCTCATAAAATCAGAAGTG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GAGTAAATAAATAAATAAAGTAAATTTCTCTACTTTTTGATTATTGGGTGAGTGTATATGGTTGTTTTATAAAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTATTCTAAATAGGATACTAAAATACAGAAAATGTATCATCTAATTAGCTATGAAGATAAAAATCTAAACTATA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ATGAGGAAATATTAAAATGTCAAGATGACGAAGAAATTTTTCAGTTTATATAATTATAGATCAGCTTAATTTCA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AACCACTTTGTTACCCTATTGCTATTTTTATACTCTAAATAGTGTCCCTTATATGACTAAGACTTTTTGTTATC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TCAGAGATTGGAAGTGTTAATTGTCCACCTTGTTAGAAGACATGGTAACTATAGGAATTTAGAAAGCATGATAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCCAACTGTAATGAATATATTCTAGAATGAGGTTGTCACAAAGAAACTGAAAACAAGAATTTCCTCTAACAACT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GAGCTCAGGATTCTTTTCAGAGGAAAATTTAGCTTGCATAAATTCTTGCCATCTTGGCTCTAGTTGACTTCTTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CTCTCAACTTTTGCAAAGTGAGATCACCTTTACCTCTTCAACCTATGAGGCCAACATGTTACTTTCAATTTTTC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGGAAAATCTACGTCTTGTTTGGCTGAGGTTTGATTATTATTCCTTAACTAAAATATTTTAATGTAGCTGTGCT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TTTTAATTTGAATATTGCTATTGATTCAAACATTGGGTAGCATATCTTTCAAATGTGAAATTTTAAAACATGTA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTAAAGACAAACATAAATTAGTTTTGGTATAACTATTTTTTAAGATTAATCCAATGCTTTTTTGGCTTTAGATG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ATGTTTGGTAATTAGCTATATTCAAAAGTCAACCTTTTTTTTTTTTCAAAAAATGAACTCCTATGTATATGAGT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GTTATTTTTATCTACCCATGTCTTTTTTGTCTACATATACAGTTTTAATCATTGTTTCGGGGGGAGGAATAAGA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ATGATTTTGAAATTTCACTAAGAAAGATATGCCCTCTTCCTAAAAATACATATATACAGATGTTTTGCTCACAG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTCAGGTATTCATGGATCTCTGGAAGTTCATTTTTATAATCCCAAGGTAATCCAAAGAGCCTGCTAAAAAATTC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TGCTGTAAATGCATGGTACATGATCTCATTCCCTGTTTTACAACGAAGTATTGAATGGCTTAAACTCCTACTTT 2886
Query 1 ----------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCT 52
||||||||||..|||||..|||||.||||||||.||||||..||||||.|||
Sbjct 2887 TTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTTACCCAGGCTGGAGTGCAGTGGCTCGATCTCTGCT 2960
Query 53 CACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCAC 126
||||||||||||||||||..|.|.||||||||||||||||||||.||||.|.|||||.|||||||||||.||||
Sbjct 2961 CACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTTCTGAGTAACTGGGATTACAAGCAC 3034
Query 127 ACGCAACCATGCCCGGCTAA--------TTTTTTTTGTATTTTTAGTAGAGAT-GGGGTTTCACCATGTTGGCC 191
|.||.|.||.|||.|||||| ||||||||||||||||||||.| || .||||||||.||||||||.|
Sbjct 3035 ATGCCATCAGGCCTGGCTAATTTTTATTTTTTTTTTGTATTTTTAGTACA-ATCAGGGTTTCAGCATGTTGGTC 3107
Query 192 AGGCTGGTCTCGAACTCCTGACCTCAAG---------------------------------------------- 219
||||||||||||||||||||||||||.|
Sbjct 3108 AGGCTGGTCTCGAACTCCTGACCTCATGATCCGCCTGCCTTGGCTTCCCAAAATGCTGGGATTACAGGCGTGAG 3181
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3182 CCAACGCGCCTGGCCAACTCCTACATATTTTAAAGCCACCCCATTAGTTTTCTATTTTTTTCCCCTTGGAGATC 3255
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3256 TTCCTTTAGGTCATTTTTACCATCTGATATCTCAAAACTAAGCCAAGGCTGAATGTGCTGAAATAGGATTAGAG 3329
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3330 AGTACAGTAATAGGATAATTAGATTTGATTAGAAAATGACTGTGTGGGATTTTGTCAACAGTGAAGAAATGATC 3403
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3404 TAAGTATGTGGACTCCTAAGTGAATTGAGCATGATGACACTTTAGTGTAGTTAATGATCTAATGCTGGTCTGGT 3477
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3478 TGATGAGTCCCATTGAAAATGAGATGCTCTGTTTTCTGGTAAACTTTTCTGCAAAGAAAAATGTACTAAATGTT 3551
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3552 TCAGTTCAGAGTGTTCTATTTAAATGAAATTTCATTTAATTGCTTTTAGTTTTACTGCCCATAAGCCTTCAGTT 3625
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3626 GTTTCATTTAAAGTGTACTTTAAGCCCTCCACTATATTCACTGTTGAATCTAATGAGTATGAGAGGGTACCTTG 3699
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3700 GGCACAATCTCCACGAATGTATGAGCCATAACTACAGTATAGTATATAGAGATTAGCTTAAGTTATTTTGCTCT 3773
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3774 GCTAAAGATAGAGAAACAAGAGCAGTTTTCTAACATAATGTATGCTTCTGTAATAGGACTCAGTTAAAAAATAA 3847
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3848 TTGGCAAATAGGAATGTCAATGAAATGTGGAAATCAATTGTTTTATACATGATTTTCCCCAATACGTTAATGTT 3921
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3922 TTGACTACCAAGTAAAAGCAGTTGCACTCTAAGTCCACTAACACAGCTGAAGGTAGTAAGCTGTGGAGGAAAGT 3995
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3996 AGTCCTATATATAACACCCATTCACTCCTCCTTTTTCCTCTTGGCTTAATTTCACCATACGATCTGTCTTGAAA 4069
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4070 ATGCTTATTGCACAATTCTTCCTGATCTTTGTGCATTTGTCCTTGTTTTTGTAACTCAACCTTTGGTTTATTTA 4143
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4144 TTCCATCATTCTTTCCTAACTCAAACAAATTTGTGAAGTTCTAAATGTATTGAAATATATGTCGTAACTTTTAT 4217
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4218 TTTTAATTGTGCTAGCATTTTCTTAGCTTTGTAAATGTTTTTTGCAGTGCTATGGTTGTGATGTTATGTAAGTT 4291
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4292 TTACACTTTTTTCTCCAACATAATTTTTTCCCGAAATATTGCCAGTTATTTTTGTTATTGAATAGACTTAATTT 4365
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4366 TCTTAGAGCAGTTTCAGGATTACAGAAAAGTCAGAGAGTACAGAAAGTTCCCATATATCTCCCATCCCTTTTCT 4439
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4440 CACAGTTTCACTTGTTATTAACATCTTACATTAGTGTGGTACATTTGTTAACAATTGATAAAACAATTTTGTTA 4513
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4514 CATTATTATTAAGTACACAGTTTACACTAGAGTTTATTCTTTTTGTTGGTCAGTTCTATGAGTTTTGAATAGTG 4587
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4588 TATAATGTCATATATTCACCATTATATTGTCATGCAGAATAGTTTCACATTTCTGAATATCCCCTATTTATCCC 4661
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4662 TTCCTCTTCCCCTCACAAACCCCTGGAATCCATTGATCTGAAACTGTCTTGCAGTTTTCTCTTTTCCAGAATGT 4735
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4736 ATGTATAGAGTCATACAGACTCTGTTGCCCTTTCAAACTGGCTTCTTTCATTTAACAACACGCATGTAAGCATC 4809
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4810 CTTCATGACTTTTCATGGCTTGATAGCTCATTTATTTTTTATTGTTCAATAATATTTCATTGTATGGATATGCC 4883
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4884 ACAGTTTATTTATCTATATATCTGTTGAAAGATATCTCGGTTACTTCCAATTTTTGGCAATTATGAATAAAGAT 4957
Query 220 -------- 219
Sbjct 4958 ACTATAAA 4965
