Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12783
- Subject:
- XR_002957764.1
- Aligned Length:
- 4974
- Identities:
- 190
- Gaps:
- 4756
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTCCTGGCCTAGAAGTGTAAATGTCTGTGTCTGTTGGTGAGACAGAGGACGTGGGCGCCCGCCGAAGAGAAGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCCTAGGCGCTGTCCGTAGTGCTGAAATGGTGCGTGGTGAGACCTGTCTCCCCAACACAAGCTAGAAGACAACA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAATAGCAGCCAGGAAACGCTCTGATAAAGCTCTAGATAGCTGCCAGGTGATGCCAGAGATTACTAGTTTTGGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACCAATTAAAGTAGCAAGATGCAGCCAGGAGTGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TAGGAGGATCACCTGAGGCCGAGCTCAAGGGAGCAGAACTAAGTTACATGATTCTGCTGCGGATGTATAAGCAC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CACTCCAATAATTTATTATCACGGTTGGAGACTTTGACTTGTCACTTTATGACTTGAAATATGGCTCCATGGTA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AATGCCCATAAAGCTGATTTTTAAAATCTGGATATTACAGTTCTAATTCTCACTTAGTTTAAAAGGTAGAATAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCTTCTTGTTTCATAGATCATTTGTGTGAATGTTGATTTGTTATGTCATTGACATCATACACACATGCTTACAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTTGAAGGTTGCTAGCGTTTCCCATTAATGCTTCTGAATTGATGCCAAAGGAAAGCATTGATTATAAATTAGGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TCCTTGGTATTAGTTGGTGCATGACCCTGACCCTTTTCAAGCTATATGAAAGGTAATGATGCTCTCAAAAGCCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCAAAATGGCTTATTCAGGAAAGCATAATGGATTAAAAATCCATTAGGTTCCACTTTCTTTGCTAGATGCTGAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATACAAAGATAAATGAGATTTGGTCTCTGCCCTCGAGGAGATACGTGGCAAAATAATATGGTAAGTTCTACAAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTTCTATACAAACACAGATTAATATGCTATTCATGTTTTATTAGCCATTGCCAAAGAAGGGATGAAGAACTGCA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAAAGATAAAACACAGAATACTTGTACTTCAGGTCCTTGCCAATATCTACTGCCCAACTTTTACAAAAAAAATT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCTGAAAGGCATGAAATATATGAATGCCTTTCTAAAGCACATGTGGATAATCTATACTTCTGGAGCATCTATGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTTATTTTCAGAACAATCCAAGTTATTAGAAAGGTAAATATGTTGGTGACATTGTTTAGAAGTTCCTCAAGCAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AATTGCCTTTACTATGCTTTGACATTATGCTCTCAGCTTATATACAGTAATTCTATGTGAAACAGTAGCCAGCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TACACAACCTGCTCTATATCTACTACAGAGCTGTTACTAAAGTGTTGGTCAACATATAACTTACTATTTCTTAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ATAAAGATGCCCAAGAAATTTAGATTTCATAGATATATCCCCAAAAGCATTTCTTTCAATACCAGTTTAATGAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTGAACTTTCATACCTCACTTAAATCAACCCAGGGTAAAGTGGTATGTTCTGTTCTTACACACAATGAAAATCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TGTAACTAATTAAAGTTAGCATTTATTTTAGCTACTAGGGATGCCAGAGTCAAATTAACAGCTGAAAATGAATA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ACTACATAAGACCTTAAGCCTTTTATATCTTTTCTTTTTTTTTAATCACCTTAACTACTGCAATTTTGGTTTCT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TAGGTAATGATAATATTATTTTCTTTTAATTATTTGTTTTAATGTGTGACCTCATGTAAATGTCCTCATAAAAT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAGAAGTGGAGTAAATAAATAAATAAAGTAAATTTCTCTACTTTTTGATTATTGGGTGAGTGTATATGGTTGTT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTATAAATTTATTCTAAATAGGATACTAAAATACAGAAAATGTATCATCTAATTAGCTATGAAGATAAAAATCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AAACTATAATGAGGAAATATTAAAATGTCAAGATGACGAAGAAATTTTTCAGTTTATATAATTATAGATCAGCT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TAATTTCAAACCACTTTGTTACCCTATTGCTATTTTTATACTCTAAATAGTGTCCCTTATATGACTAAGACTTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTGTTATCTCAGAGATTGGAAGTGTTAATTGTCCACCTTGTTAGAAGACATGGTAACTATAGGAATTTAGAAAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CATGATAGCCCAACTGTAATGAATATATTCTAGAATGAGGTTGTCACAAAGAAACTGAAAACAAGAATTTCCTC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TAACAACTGAGCTCAGGATTCTTTTCAGAGGAAAATTTAGCTTGCATAAATTCTTGCCATCTTGGCTCTAGTTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ACTTCTTGCTCTCAACTTTTGCAAAGTGAGATCACCTTTACCTCTTCAACCTATGAGGCCAACATGTTACTTTC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AATTTTTCAGGAAAATCTACGTCTTGTTTGGCTGAGGTTTGATTATTATTCCTTAACTAAAATATTTTAATGTA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GCTGTGCTTTTTAATTTGAATATTGCTATTGATTCAAACATTGGGTAGCATATCTTTCAAATGTGAAATTTTAA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AACATGTATTAAAGACAAACATAAATTAGTTTTGGTATAACTATTTTTTAAGATTAATCCAATGCTTTTTTGGC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTTAGATGATGTTTGGTAATTAGCTATATTCAAAAGTCAACCTTTTTTTTTTTTCAAAAAATGAACTCCTATGT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ATATGAGTGTTATTTTTATCTACCCATGTCTTTTTTGTCTACATATACAGTTTTAATCATTGTTTCGGGGGGAG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GAATAAGAATGATTTTGAAATTTCACTAAGAAAGATATGCCCTCTTCCTAAAAATACATATATACAGATGTTTT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GCTCACAGCTCAGGTATTCATGGATCTCTGGAAGTTCATTTTTATAATCCCAAGGTAATCCAAAGAGCCTGCTA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AAAAATTCTGCTGTAAATGCATGGTACATGATCTCATTCCCTGTTTTACAACGAAGTATTGAATGGCTTAAACT 2886
Query 1 ------------------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGA 44
||||||||||..|||||..|||||.||||||||.||||||..||
Sbjct 2887 CCTACTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTTACCCAGGCTGGAGTGCAGTGGCTCGA 2960
Query 45 TCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATT 118
||||.|||||||||||||||||||||..|.|.||||||||||||||||||||.||||.|.|||||.||||||||
Sbjct 2961 TCTCTGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTTCTGAGTAACTGGGATT 3034
Query 119 ACAGGCACACGCAACCATGCCCGGCTAA--------TTTTTTTTGTATTTTTAGTAGAGAT-GGGGTTTCACCA 183
|||.|||||.||.|.||.|||.|||||| ||||||||||||||||||||.| || .||||||||.||
Sbjct 3035 ACAAGCACATGCCATCAGGCCTGGCTAATTTTTATTTTTTTTTTGTATTTTTAGTACA-ATCAGGGTTTCAGCA 3107
Query 184 TGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG-------------------------------------- 219
||||||.|||||||||||||||||||||||||||.|
Sbjct 3108 TGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCATGATCCGCCTGCCTTGGCTTCCCAAAATGCTGGGATTACA 3181
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3182 GGCGTGAGCCAACGCGCCTGGCCAACTCCTACATATTTTAAAGCCACCCCATTAGTTTTCTATTTTTTTCCCCT 3255
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3256 TGGAGATCTTCCTTTAGGTCATTTTTACCATCTGATATCTCAAAACTAAGCCAAGGCTGAATGTGCTGAAATAG 3329
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3330 GATTAGAGAGTACAGTAATAGGATAATTAGATTTGATTAGAAAATGACTGTGTGGGATTTTGTCAACAGTGAAG 3403
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3404 AAATGATCTAAGTATGTGGACTCCTAAGTGAATTGAGCATGATGACACTTTAGTGTAGTTAATGATCTAATGCT 3477
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3478 GGTCTGGTTGATGAGTCCCATTGAAAATGAGATGCTCTGTTTTCTGGTAAACTTTTCTGCAAAGAAAAATGTAC 3551
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3552 TAAATGTTTCAGTTCAGAGTGTTCTATTTAAATGAAATTTCATTTAATTGCTTTTAGTTTTACTGCCCATAAGC 3625
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3626 CTTCAGTTGTTTCATTTAAAGTGTACTTTAAGCCCTCCACTATATTCACTGTTGAATCTAATGAGTATGAGAGG 3699
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3700 GTACCTTGGGCACAATCTCCACGAATGTATGAGCCATAACTACAGTATAGTATATAGAGATTAGCTTAAGTTAT 3773
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3774 TTTGCTCTGCTAAAGATAGAGAAACAAGAGCAGTTTTCTAACATAATGTATGCTTCTGTAATAGGACTCAGTTA 3847
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3848 AAAAATAATTGGCAAATAGGAATGTCAATGAAATGTGGAAATCAATTGTTTTATACATGATTTTCCCCAATACG 3921
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3922 TTAATGTTTTGACTACCAAGTAAAAGCAGTTGCACTCTAAGTCCACTAACACAGCTGAAGGTAGTAAGCTGTGG 3995
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3996 AGGAAAGTAGTCCTATATATAACACCCATTCACTCCTCCTTTTTCCTCTTGGCTTAATTTCACCATACGATCTG 4069
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4070 TCTTGAAAATGCTTATTGCACAATTCTTCCTGATCTTTGTGCATTTGTCCTTGTTTTTGTAACTCAACCTTTGG 4143
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4144 TTTATTTATTCCATCATTCTTTCCTAACTCAAACAAATTTGTGAAGTTCTAAATGTATTGAAATATATGTCGTA 4217
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4218 ACTTTTATTTTTAATTGTGCTAGCATTTTCTTAGCTTTGTAAATGTTTTTTGCAGTGCTATGGTTGTGATGTTA 4291
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4292 TGTAAGTTTTACACTTTTTTCTCCAACATAATTTTTTCCCGAAATATTGCCAGTTATTTTTGTTATTGAATAGA 4365
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4366 CTTAATTTTCTTAGAGCAGTTTCAGGATTACAGAAAAGTCAGAGAGTACAGAAAGTTCCCATATATCTCCCATC 4439
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4440 CCTTTTCTCACAGTTTCACTTGTTATTAACATCTTACATTAGTGTGGTACATTTGTTAACAATTGATAAAACAA 4513
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4514 TTTTGTTACATTATTATTAAGTACACAGTTTACACTAGAGTTTATTCTTTTTGTTGGTCAGTTCTATGAGTTTT 4587
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4588 GAATAGTGTATAATGTCATATATTCACCATTATATTGTCATGCAGAATAGTTTCACATTTCTGAATATCCCCTA 4661
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4662 TTTATCCCTTCCTCTTCCCCTCACAAACCCCTGGAATCCATTGATCTGAAACTGTCTTGCAGTTTTCTCTTTTC 4735
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4736 CAGAATGTATGTATAGAGTCATACAGACTCTGTTGCCCTTTCAAACTGGCTTCTTTCATTTAACAACACGCATG 4809
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4810 TAAGCATCCTTCATGACTTTTCATGGCTTGATAGCTCATTTATTTTTTATTGTTCAATAATATTTCATTGTATG 4883
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4884 GATATGCCACAGTTTATTTATCTATATATCTGTTGAAAGATATCTCGGTTACTTCCAATTTTTGGCAATTATGA 4957
Query 220 ---------------- 219
Sbjct 4958 ATAAAGATACTATAAA 4973
