Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
XR_002957764.1
Aligned Length:
4974
Identities:
190
Gaps:
4756

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTCCTGGCCTAGAAGTGTAAATGTCTGTGTCTGTTGGTGAGACAGAGGACGTGGGCGCCCGCCGAAGAGAAGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCCTAGGCGCTGTCCGTAGTGCTGAAATGGTGCGTGGTGAGACCTGTCTCCCCAACACAAGCTAGAAGACAACA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAATAGCAGCCAGGAAACGCTCTGATAAAGCTCTAGATAGCTGCCAGGTGATGCCAGAGATTACTAGTTTTGGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACCAATTAAAGTAGCAAGATGCAGCCAGGAGTGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TAGGAGGATCACCTGAGGCCGAGCTCAAGGGAGCAGAACTAAGTTACATGATTCTGCTGCGGATGTATAAGCAC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CACTCCAATAATTTATTATCACGGTTGGAGACTTTGACTTGTCACTTTATGACTTGAAATATGGCTCCATGGTA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AATGCCCATAAAGCTGATTTTTAAAATCTGGATATTACAGTTCTAATTCTCACTTAGTTTAAAAGGTAGAATAG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCTTCTTGTTTCATAGATCATTTGTGTGAATGTTGATTTGTTATGTCATTGACATCATACACACATGCTTACAT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTTGAAGGTTGCTAGCGTTTCCCATTAATGCTTCTGAATTGATGCCAAAGGAAAGCATTGATTATAAATTAGGT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TCCTTGGTATTAGTTGGTGCATGACCCTGACCCTTTTCAAGCTATATGAAAGGTAATGATGCTCTCAAAAGCCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCAAAATGGCTTATTCAGGAAAGCATAATGGATTAAAAATCCATTAGGTTCCACTTTCTTTGCTAGATGCTGAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ATACAAAGATAAATGAGATTTGGTCTCTGCCCTCGAGGAGATACGTGGCAAAATAATATGGTAAGTTCTACAAA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GTTCTATACAAACACAGATTAATATGCTATTCATGTTTTATTAGCCATTGCCAAAGAAGGGATGAAGAACTGCA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AAAAGATAAAACACAGAATACTTGTACTTCAGGTCCTTGCCAATATCTACTGCCCAACTTTTACAAAAAAAATT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCTGAAAGGCATGAAATATATGAATGCCTTTCTAAAGCACATGTGGATAATCTATACTTCTGGAGCATCTATGA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TTTATTTTCAGAACAATCCAAGTTATTAGAAAGGTAAATATGTTGGTGACATTGTTTAGAAGTTCCTCAAGCAG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AATTGCCTTTACTATGCTTTGACATTATGCTCTCAGCTTATATACAGTAATTCTATGTGAAACAGTAGCCAGCT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TACACAACCTGCTCTATATCTACTACAGAGCTGTTACTAAAGTGTTGGTCAACATATAACTTACTATTTCTTAT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  ATAAAGATGCCCAAGAAATTTAGATTTCATAGATATATCCCCAAAAGCATTTCTTTCAATACCAGTTTAATGAA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TTGAACTTTCATACCTCACTTAAATCAACCCAGGGTAAAGTGGTATGTTCTGTTCTTACACACAATGAAAATCA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TGTAACTAATTAAAGTTAGCATTTATTTTAGCTACTAGGGATGCCAGAGTCAAATTAACAGCTGAAAATGAATA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  ACTACATAAGACCTTAAGCCTTTTATATCTTTTCTTTTTTTTTAATCACCTTAACTACTGCAATTTTGGTTTCT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TAGGTAATGATAATATTATTTTCTTTTAATTATTTGTTTTAATGTGTGACCTCATGTAAATGTCCTCATAAAAT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CAGAAGTGGAGTAAATAAATAAATAAAGTAAATTTCTCTACTTTTTGATTATTGGGTGAGTGTATATGGTTGTT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TTATAAATTTATTCTAAATAGGATACTAAAATACAGAAAATGTATCATCTAATTAGCTATGAAGATAAAAATCT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AAACTATAATGAGGAAATATTAAAATGTCAAGATGACGAAGAAATTTTTCAGTTTATATAATTATAGATCAGCT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TAATTTCAAACCACTTTGTTACCCTATTGCTATTTTTATACTCTAAATAGTGTCCCTTATATGACTAAGACTTT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TTGTTATCTCAGAGATTGGAAGTGTTAATTGTCCACCTTGTTAGAAGACATGGTAACTATAGGAATTTAGAAAG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CATGATAGCCCAACTGTAATGAATATATTCTAGAATGAGGTTGTCACAAAGAAACTGAAAACAAGAATTTCCTC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TAACAACTGAGCTCAGGATTCTTTTCAGAGGAAAATTTAGCTTGCATAAATTCTTGCCATCTTGGCTCTAGTTG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ACTTCTTGCTCTCAACTTTTGCAAAGTGAGATCACCTTTACCTCTTCAACCTATGAGGCCAACATGTTACTTTC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AATTTTTCAGGAAAATCTACGTCTTGTTTGGCTGAGGTTTGATTATTATTCCTTAACTAAAATATTTTAATGTA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GCTGTGCTTTTTAATTTGAATATTGCTATTGATTCAAACATTGGGTAGCATATCTTTCAAATGTGAAATTTTAA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AACATGTATTAAAGACAAACATAAATTAGTTTTGGTATAACTATTTTTTAAGATTAATCCAATGCTTTTTTGGC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TTTAGATGATGTTTGGTAATTAGCTATATTCAAAAGTCAACCTTTTTTTTTTTTCAAAAAATGAACTCCTATGT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ATATGAGTGTTATTTTTATCTACCCATGTCTTTTTTGTCTACATATACAGTTTTAATCATTGTTTCGGGGGGAG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GAATAAGAATGATTTTGAAATTTCACTAAGAAAGATATGCCCTCTTCCTAAAAATACATATATACAGATGTTTT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GCTCACAGCTCAGGTATTCATGGATCTCTGGAAGTTCATTTTTATAATCCCAAGGTAATCCAAAGAGCCTGCTA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AAAAATTCTGCTGTAAATGCATGGTACATGATCTCATTCCCTGTTTTACAACGAAGTATTGAATGGCTTAAACT  2886

Query    1  ------------------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGA  44
                                          ||||||||||..|||||..|||||.||||||||.||||||..||
Sbjct 2887  CCTACTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTTACCCAGGCTGGAGTGCAGTGGCTCGA  2960

Query   45  TCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATT  118
            ||||.|||||||||||||||||||||..|.|.||||||||||||||||||||.||||.|.|||||.||||||||
Sbjct 2961  TCTCTGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTTCTGAGTAACTGGGATT  3034

Query  119  ACAGGCACACGCAACCATGCCCGGCTAA--------TTTTTTTTGTATTTTTAGTAGAGAT-GGGGTTTCACCA  183
            |||.|||||.||.|.||.|||.||||||        ||||||||||||||||||||.| || .||||||||.||
Sbjct 3035  ACAAGCACATGCCATCAGGCCTGGCTAATTTTTATTTTTTTTTTGTATTTTTAGTACA-ATCAGGGTTTCAGCA  3107

Query  184  TGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG--------------------------------------  219
            ||||||.|||||||||||||||||||||||||||.|                                      
Sbjct 3108  TGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCATGATCCGCCTGCCTTGGCTTCCCAAAATGCTGGGATTACA  3181

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3182  GGCGTGAGCCAACGCGCCTGGCCAACTCCTACATATTTTAAAGCCACCCCATTAGTTTTCTATTTTTTTCCCCT  3255

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3256  TGGAGATCTTCCTTTAGGTCATTTTTACCATCTGATATCTCAAAACTAAGCCAAGGCTGAATGTGCTGAAATAG  3329

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3330  GATTAGAGAGTACAGTAATAGGATAATTAGATTTGATTAGAAAATGACTGTGTGGGATTTTGTCAACAGTGAAG  3403

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3404  AAATGATCTAAGTATGTGGACTCCTAAGTGAATTGAGCATGATGACACTTTAGTGTAGTTAATGATCTAATGCT  3477

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3478  GGTCTGGTTGATGAGTCCCATTGAAAATGAGATGCTCTGTTTTCTGGTAAACTTTTCTGCAAAGAAAAATGTAC  3551

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3552  TAAATGTTTCAGTTCAGAGTGTTCTATTTAAATGAAATTTCATTTAATTGCTTTTAGTTTTACTGCCCATAAGC  3625

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3626  CTTCAGTTGTTTCATTTAAAGTGTACTTTAAGCCCTCCACTATATTCACTGTTGAATCTAATGAGTATGAGAGG  3699

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3700  GTACCTTGGGCACAATCTCCACGAATGTATGAGCCATAACTACAGTATAGTATATAGAGATTAGCTTAAGTTAT  3773

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3774  TTTGCTCTGCTAAAGATAGAGAAACAAGAGCAGTTTTCTAACATAATGTATGCTTCTGTAATAGGACTCAGTTA  3847

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3848  AAAAATAATTGGCAAATAGGAATGTCAATGAAATGTGGAAATCAATTGTTTTATACATGATTTTCCCCAATACG  3921

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3922  TTAATGTTTTGACTACCAAGTAAAAGCAGTTGCACTCTAAGTCCACTAACACAGCTGAAGGTAGTAAGCTGTGG  3995

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3996  AGGAAAGTAGTCCTATATATAACACCCATTCACTCCTCCTTTTTCCTCTTGGCTTAATTTCACCATACGATCTG  4069

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4070  TCTTGAAAATGCTTATTGCACAATTCTTCCTGATCTTTGTGCATTTGTCCTTGTTTTTGTAACTCAACCTTTGG  4143

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4144  TTTATTTATTCCATCATTCTTTCCTAACTCAAACAAATTTGTGAAGTTCTAAATGTATTGAAATATATGTCGTA  4217

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4218  ACTTTTATTTTTAATTGTGCTAGCATTTTCTTAGCTTTGTAAATGTTTTTTGCAGTGCTATGGTTGTGATGTTA  4291

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4292  TGTAAGTTTTACACTTTTTTCTCCAACATAATTTTTTCCCGAAATATTGCCAGTTATTTTTGTTATTGAATAGA  4365

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4366  CTTAATTTTCTTAGAGCAGTTTCAGGATTACAGAAAAGTCAGAGAGTACAGAAAGTTCCCATATATCTCCCATC  4439

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4440  CCTTTTCTCACAGTTTCACTTGTTATTAACATCTTACATTAGTGTGGTACATTTGTTAACAATTGATAAAACAA  4513

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4514  TTTTGTTACATTATTATTAAGTACACAGTTTACACTAGAGTTTATTCTTTTTGTTGGTCAGTTCTATGAGTTTT  4587

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4588  GAATAGTGTATAATGTCATATATTCACCATTATATTGTCATGCAGAATAGTTTCACATTTCTGAATATCCCCTA  4661

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4662  TTTATCCCTTCCTCTTCCCCTCACAAACCCCTGGAATCCATTGATCTGAAACTGTCTTGCAGTTTTCTCTTTTC  4735

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4736  CAGAATGTATGTATAGAGTCATACAGACTCTGTTGCCCTTTCAAACTGGCTTCTTTCATTTAACAACACGCATG  4809

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4810  TAAGCATCCTTCATGACTTTTCATGGCTTGATAGCTCATTTATTTTTTATTGTTCAATAATATTTCATTGTATG  4883

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4884  GATATGCCACAGTTTATTTATCTATATATCTGTTGAAAGATATCTCGGTTACTTCCAATTTTTGGCAATTATGA  4957

Query  220  ----------------  219
                            
Sbjct 4958  ATAAAGATACTATAAA  4973

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