Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
XR_002957765.1
Aligned Length:
4990
Identities:
190
Gaps:
4772

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACAGAGGACGTGGGCGCCCGCCGAAGTACGTGTGCGCGCGCGCGTTTGCAGGAAAACGTGCATGGATTTCTTCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGTGGCAGAGAAGGCGCCTAGGCGCTGTCCGTAGTGCTGAAATGGTGCGTGGTGAGACCTGTCTCCCCAACAC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAGCTAGAAGACAACAAAATAGCAGCCAGGAAACGCTCTGATAAAGCTCTAGATAGCTGCCAGGTGATGCCAGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GATTACTAGTTTTGGGACCAATTAAAGTAGCAAGATGCAGCCAGGAGTGGTGGCTTATGCCTGTAATCCCAGCA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTTTGGGAGGCCGAGGTAGGAGGATCACCTGAGGCCGAGCTCAAGGGAGCAGAACTAAGTTACATGATTCTGCT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GCGGATGTATAAGCACCACTCCAATAATTTATTATCACGGTTGGAGACTTTGACTTGTCACTTTATGACTTGAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATATGGCTCCATGGTAAATGCCCATAAAGCTGATTTTTAAAATCTGGATATTACAGTTCTAATTCTCACTTAGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TTAAAAGGTAGAATAGGCTTCTTGTTTCATAGATCATTTGTGTGAATGTTGATTTGTTATGTCATTGACATCAT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ACACACATGCTTACATTTTGAAGGTTGCTAGCGTTTCCCATTAATGCTTCTGAATTGATGCCAAAGGAAAGCAT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGATTATAAATTAGGTTCCTTGGTATTAGTTGGTGCATGACCCTGACCCTTTTCAAGCTATATGAAAGGTAATG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ATGCTCTCAAAAGCCTGCAAAATGGCTTATTCAGGAAAGCATAATGGATTAAAAATCCATTAGGTTCCACTTTC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TTTGCTAGATGCTGAGATACAAAGATAAATGAGATTTGGTCTCTGCCCTCGAGGAGATACGTGGCAAAATAATA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TGGTAAGTTCTACAAAGTTCTATACAAACACAGATTAATATGCTATTCATGTTTTATTAGCCATTGCCAAAGAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGGATGAAGAACTGCAAAAAGATAAAACACAGAATACTTGTACTTCAGGTCCTTGCCAATATCTACTGCCCAAC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TTTTACAAAAAAAATTGCTGAAAGGCATGAAATATATGAATGCCTTTCTAAAGCACATGTGGATAATCTATACT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TCTGGAGCATCTATGATTTATTTTCAGAACAATCCAAGTTATTAGAAAGGTAAATATGTTGGTGACATTGTTTA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GAAGTTCCTCAAGCAGAATTGCCTTTACTATGCTTTGACATTATGCTCTCAGCTTATATACAGTAATTCTATGT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GAAACAGTAGCCAGCTTACACAACCTGCTCTATATCTACTACAGAGCTGTTACTAAAGTGTTGGTCAACATATA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  ACTTACTATTTCTTATATAAAGATGCCCAAGAAATTTAGATTTCATAGATATATCCCCAAAAGCATTTCTTTCA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ATACCAGTTTAATGAATTGAACTTTCATACCTCACTTAAATCAACCCAGGGTAAAGTGGTATGTTCTGTTCTTA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CACACAATGAAAATCATGTAACTAATTAAAGTTAGCATTTATTTTAGCTACTAGGGATGCCAGAGTCAAATTAA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CAGCTGAAAATGAATAACTACATAAGACCTTAAGCCTTTTATATCTTTTCTTTTTTTTTAATCACCTTAACTAC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TGCAATTTTGGTTTCTTAGGTAATGATAATATTATTTTCTTTTAATTATTTGTTTTAATGTGTGACCTCATGTA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AATGTCCTCATAAAATCAGAAGTGGAGTAAATAAATAAATAAAGTAAATTTCTCTACTTTTTGATTATTGGGTG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AGTGTATATGGTTGTTTTATAAATTTATTCTAAATAGGATACTAAAATACAGAAAATGTATCATCTAATTAGCT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  ATGAAGATAAAAATCTAAACTATAATGAGGAAATATTAAAATGTCAAGATGACGAAGAAATTTTTCAGTTTATA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TAATTATAGATCAGCTTAATTTCAAACCACTTTGTTACCCTATTGCTATTTTTATACTCTAAATAGTGTCCCTT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  ATATGACTAAGACTTTTTGTTATCTCAGAGATTGGAAGTGTTAATTGTCCACCTTGTTAGAAGACATGGTAACT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ATAGGAATTTAGAAAGCATGATAGCCCAACTGTAATGAATATATTCTAGAATGAGGTTGTCACAAAGAAACTGA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AAACAAGAATTTCCTCTAACAACTGAGCTCAGGATTCTTTTCAGAGGAAAATTTAGCTTGCATAAATTCTTGCC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ATCTTGGCTCTAGTTGACTTCTTGCTCTCAACTTTTGCAAAGTGAGATCACCTTTACCTCTTCAACCTATGAGG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CCAACATGTTACTTTCAATTTTTCAGGAAAATCTACGTCTTGTTTGGCTGAGGTTTGATTATTATTCCTTAACT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AAAATATTTTAATGTAGCTGTGCTTTTTAATTTGAATATTGCTATTGATTCAAACATTGGGTAGCATATCTTTC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AAATGTGAAATTTTAAAACATGTATTAAAGACAAACATAAATTAGTTTTGGTATAACTATTTTTTAAGATTAAT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CCAATGCTTTTTTGGCTTTAGATGATGTTTGGTAATTAGCTATATTCAAAAGTCAACCTTTTTTTTTTTTCAAA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AAATGAACTCCTATGTATATGAGTGTTATTTTTATCTACCCATGTCTTTTTTGTCTACATATACAGTTTTAATC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  ATTGTTTCGGGGGGAGGAATAAGAATGATTTTGAAATTTCACTAAGAAAGATATGCCCTCTTCCTAAAAATACA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TATATACAGATGTTTTGCTCACAGCTCAGGTATTCATGGATCTCTGGAAGTTCATTTTTATAATCCCAAGGTAA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TCCAAAGAGCCTGCTAAAAAATTCTGCTGTAAATGCATGGTACATGATCTCATTCCCTGTTTTACAACGAAGTA  2886

Query    1  ----------------------------------------------ATGGAGTCTCATTCTGTCGCCCAGACTG  28
                                                          ||||||||||..|||||..|||||.|||
Sbjct 2887  TTGAATGGCTTAAACTCCTACTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTTACCCAGGCTG  2960

Query   29  GAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTC  102
            |||||.||||||..||||||.|||||||||||||||||||||..|.|.||||||||||||||||||||.||||.
Sbjct 2961  GAGTGCAGTGGCTCGATCTCTGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTT  3034

Query  103  CGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAA--------TTTTTTTTGTATTTTTAGTAGA  168
            |.|||||.|||||||||||.|||||.||.|.||.|||.||||||        ||||||||||||||||||||.|
Sbjct 3035  CTGAGTAACTGGGATTACAAGCACATGCCATCAGGCCTGGCTAATTTTTATTTTTTTTTTGTATTTTTAGTACA  3108

Query  169  GAT-GGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG----------------------  219
             || .||||||||.||||||||.|||||||||||||||||||||||||||.|                      
Sbjct 3109  -ATCAGGGTTTCAGCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCATGATCCGCCTGCCTTGGCTTCCCA  3181

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3182  AAATGCTGGGATTACAGGCGTGAGCCAACGCGCCTGGCCAACTCCTACATATTTTAAAGCCACCCCATTAGTTT  3255

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3256  TCTATTTTTTTCCCCTTGGAGATCTTCCTTTAGGTCATTTTTACCATCTGATATCTCAAAACTAAGCCAAGGCT  3329

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3330  GAATGTGCTGAAATAGGATTAGAGAGTACAGTAATAGGATAATTAGATTTGATTAGAAAATGACTGTGTGGGAT  3403

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3404  TTTGTCAACAGTGAAGAAATGATCTAAGTATGTGGACTCCTAAGTGAATTGAGCATGATGACACTTTAGTGTAG  3477

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3478  TTAATGATCTAATGCTGGTCTGGTTGATGAGTCCCATTGAAAATGAGATGCTCTGTTTTCTGGTAAACTTTTCT  3551

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3552  GCAAAGAAAAATGTACTAAATGTTTCAGTTCAGAGTGTTCTATTTAAATGAAATTTCATTTAATTGCTTTTAGT  3625

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3626  TTTACTGCCCATAAGCCTTCAGTTGTTTCATTTAAAGTGTACTTTAAGCCCTCCACTATATTCACTGTTGAATC  3699

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3700  TAATGAGTATGAGAGGGTACCTTGGGCACAATCTCCACGAATGTATGAGCCATAACTACAGTATAGTATATAGA  3773

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3774  GATTAGCTTAAGTTATTTTGCTCTGCTAAAGATAGAGAAACAAGAGCAGTTTTCTAACATAATGTATGCTTCTG  3847

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3848  TAATAGGACTCAGTTAAAAAATAATTGGCAAATAGGAATGTCAATGAAATGTGGAAATCAATTGTTTTATACAT  3921

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3922  GATTTTCCCCAATACGTTAATGTTTTGACTACCAAGTAAAAGCAGTTGCACTCTAAGTCCACTAACACAGCTGA  3995

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3996  AGGTAGTAAGCTGTGGAGGAAAGTAGTCCTATATATAACACCCATTCACTCCTCCTTTTTCCTCTTGGCTTAAT  4069

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4070  TTCACCATACGATCTGTCTTGAAAATGCTTATTGCACAATTCTTCCTGATCTTTGTGCATTTGTCCTTGTTTTT  4143

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4144  GTAACTCAACCTTTGGTTTATTTATTCCATCATTCTTTCCTAACTCAAACAAATTTGTGAAGTTCTAAATGTAT  4217

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4218  TGAAATATATGTCGTAACTTTTATTTTTAATTGTGCTAGCATTTTCTTAGCTTTGTAAATGTTTTTTGCAGTGC  4291

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4292  TATGGTTGTGATGTTATGTAAGTTTTACACTTTTTTCTCCAACATAATTTTTTCCCGAAATATTGCCAGTTATT  4365

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4366  TTTGTTATTGAATAGACTTAATTTTCTTAGAGCAGTTTCAGGATTACAGAAAAGTCAGAGAGTACAGAAAGTTC  4439

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4440  CCATATATCTCCCATCCCTTTTCTCACAGTTTCACTTGTTATTAACATCTTACATTAGTGTGGTACATTTGTTA  4513

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4514  ACAATTGATAAAACAATTTTGTTACATTATTATTAAGTACACAGTTTACACTAGAGTTTATTCTTTTTGTTGGT  4587

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4588  CAGTTCTATGAGTTTTGAATAGTGTATAATGTCATATATTCACCATTATATTGTCATGCAGAATAGTTTCACAT  4661

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4662  TTCTGAATATCCCCTATTTATCCCTTCCTCTTCCCCTCACAAACCCCTGGAATCCATTGATCTGAAACTGTCTT  4735

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4736  GCAGTTTTCTCTTTTCCAGAATGTATGTATAGAGTCATACAGACTCTGTTGCCCTTTCAAACTGGCTTCTTTCA  4809

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4810  TTTAACAACACGCATGTAAGCATCCTTCATGACTTTTCATGGCTTGATAGCTCATTTATTTTTTATTGTTCAAT  4883

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4884  AATATTTCATTGTATGGATATGCCACAGTTTATTTATCTATATATCTGTTGAAAGATATCTCGGTTACTTCCAA  4957

Query  220  --------------------------------  219
                                            
Sbjct 4958  TTTTTGGCAATTATGAATAAAGATACTATAAA  4989

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