Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
XR_002957766.1
Aligned Length:
4872
Identities:
190
Gaps:
4654

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACAGAGGACGTGGGCGCCCGCCGAAGTACGTGTGCGCGCGCGCGTTTGCAGGAAAACGTGCATGGATTTCTTCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGTGGCAGAGAAGGCGCCTAGGCGCTGTCCGTAGTGCTGAAATGGTGCGTGGTGAGACCTGTCTCCCCAACAC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAGCTAGAAGACAACAAAATAGCAGCCAGGAAACGCTCTGATAAAGCTCTAGATAGCTGCCAGGCCGAGCTCAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGGAGCAGAACTAAGTTACATGATTCTGCTGCGGATGTATAAGCACCACTCCAATAATTTATTATCACGGTTGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGACTTTGACTTGTCACTTTATGACTTGAAATATGGCTCCATGGTAAATGCCCATAAAGCTGATTTTTAAAATC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGGATATTACAGTTCTAATTCTCACTTAGTTTAAAAGGTAGAATAGGCTTCTTGTTTCATAGATCATTTGTGTG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AATGTTGATTTGTTATGTCATTGACATCATACACACATGCTTACATTTTGAAGGTTGCTAGCGTTTCCCATTAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGCTTCTGAATTGATGCCAAAGGAAAGCATTGATTATAAATTAGGTTCCTTGGTATTAGTTGGTGCATGACCCT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GACCCTTTTCAAGCTATATGAAAGGTAATGATGCTCTCAAAAGCCTGCAAAATGGCTTATTCAGGAAAGCATAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGGATTAAAAATCCATTAGGTTCCACTTTCTTTGCTAGATGCTGAGATACAAAGATAAATGAGATTTGGTCTCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCCCTCGAGGAGATACGTGGCAAAATAATATGGTAAGTTCTACAAAGTTCTATACAAACACAGATTAATATGCT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ATTCATGTTTTATTAGCCATTGCCAAAGAAGGGATGAAGAACTGCAAAAAGATAAAACACAGAATACTTGTACT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCAGGTCCTTGCCAATATCTACTGCCCAACTTTTACAAAAAAAATTGCTGAAAGGCATGAAATATATGAATGCC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TTTCTAAAGCACATGTGGATAATCTATACTTCTGGAGCATCTATGATTTATTTTCAGAACAATCCAAGTTATTA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GAAAGGTAAATATGTTGGTGACATTGTTTAGAAGTTCCTCAAGCAGAATTGCCTTTACTATGCTTTGACATTAT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GCTCTCAGCTTATATACAGTAATTCTATGTGAAACAGTAGCCAGCTTACACAACCTGCTCTATATCTACTACAG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGCTGTTACTAAAGTGTTGGTCAACATATAACTTACTATTTCTTATATAAAGATGCCCAAGAAATTTAGATTTC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ATAGATATATCCCCAAAAGCATTTCTTTCAATACCAGTTTAATGAATTGAACTTTCATACCTCACTTAAATCAA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CCCAGGGTAAAGTGGTATGTTCTGTTCTTACACACAATGAAAATCATGTAACTAATTAAAGTTAGCATTTATTT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TAGCTACTAGGGATGCCAGAGTCAAATTAACAGCTGAAAATGAATAACTACATAAGACCTTAAGCCTTTTATAT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CTTTTCTTTTTTTTTAATCACCTTAACTACTGCAATTTTGGTTTCTTAGGTAATGATAATATTATTTTCTTTTA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  ATTATTTGTTTTAATGTGTGACCTCATGTAAATGTCCTCATAAAATCAGAAGTGGAGTAAATAAATAAATAAAG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TAAATTTCTCTACTTTTTGATTATTGGGTGAGTGTATATGGTTGTTTTATAAATTTATTCTAAATAGGATACTA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AAATACAGAAAATGTATCATCTAATTAGCTATGAAGATAAAAATCTAAACTATAATGAGGAAATATTAAAATGT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CAAGATGACGAAGAAATTTTTCAGTTTATATAATTATAGATCAGCTTAATTTCAAACCACTTTGTTACCCTATT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GCTATTTTTATACTCTAAATAGTGTCCCTTATATGACTAAGACTTTTTGTTATCTCAGAGATTGGAAGTGTTAA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TTGTCCACCTTGTTAGAAGACATGGTAACTATAGGAATTTAGAAAGCATGATAGCCCAACTGTAATGAATATAT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TCTAGAATGAGGTTGTCACAAAGAAACTGAAAACAAGAATTTCCTCTAACAACTGAGCTCAGGATTCTTTTCAG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  AGGAAAATTTAGCTTGCATAAATTCTTGCCATCTTGGCTCTAGTTGACTTCTTGCTCTCAACTTTTGCAAAGTG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AGATCACCTTTACCTCTTCAACCTATGAGGCCAACATGTTACTTTCAATTTTTCAGGAAAATCTACGTCTTGTT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TGGCTGAGGTTTGATTATTATTCCTTAACTAAAATATTTTAATGTAGCTGTGCTTTTTAATTTGAATATTGCTA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TTGATTCAAACATTGGGTAGCATATCTTTCAAATGTGAAATTTTAAAACATGTATTAAAGACAAACATAAATTA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GTTTTGGTATAACTATTTTTTAAGATTAATCCAATGCTTTTTTGGCTTTAGATGATGTTTGGTAATTAGCTATA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TTCAAAAGTCAACCTTTTTTTTTTTTCAAAAAATGAACTCCTATGTATATGAGTGTTATTTTTATCTACCCATG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TCTTTTTTGTCTACATATACAGTTTTAATCATTGTTTCGGGGGGAGGAATAAGAATGATTTTGAAATTTCACTA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AGAAAGATATGCCCTCTTCCTAAAAATACATATATACAGATGTTTTGCTCACAGCTCAGGTATTCATGGATCTC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TGGAAGTTCATTTTTATAATCCCAAGGTAATCCAAAGAGCCTGCTAAAAAATTCTGCTGTAAATGCATGGTACA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TGATCTCATTCCCTGTTTTACAACGAAGTATTGAATGGCTTAAACTCCTACTTTTTTTTTTTTTTTTTTTTTTG  2812

Query    1  --ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTC  72
              ||||||||||..|||||..|||||.||||||||.||||||..||||||.|||||||||||||||||||||..
Sbjct 2813  AGATGGAGTCTCCCTCTGTTACCCAGGCTGGAGTGCAGTGGCTCGATCTCTGCTCACTGCAACCTCTGCCTCCT  2886

Query   73  GAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAA  146
            |.|.||||||||||||||||||||.||||.|.|||||.|||||||||||.|||||.||.|.||.|||.||||||
Sbjct 2887  GGGTTCAAGCGATTCTCCTGCCTCAGCCTTCTGAGTAACTGGGATTACAAGCACATGCCATCAGGCCTGGCTAA  2960

Query  147  --------TTTTTTTTGTATTTTTAGTAGAGAT-GGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTG  211
                    ||||||||||||||||||||.| || .||||||||.||||||||.|||||||||||||||||||||
Sbjct 2961  TTTTTATTTTTTTTTTGTATTTTTAGTACA-ATCAGGGTTTCAGCATGTTGGTCAGGCTGGTCTCGAACTCCTG  3033

Query  212  ACCTCAAG------------------------------------------------------------------  219
            ||||||.|                                                                  
Sbjct 3034  ACCTCATGATCCGCCTGCCTTGGCTTCCCAAAATGCTGGGATTACAGGCGTGAGCCAACGCGCCTGGCCAACTC  3107

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3108  CTACATATTTTAAAGCCACCCCATTAGTTTTCTATTTTTTTCCCCTTGGAGATCTTCCTTTAGGTCATTTTTAC  3181

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3182  CATCTGATATCTCAAAACTAAGCCAAGGCTGAATGTGCTGAAATAGGATTAGAGAGTACAGTAATAGGATAATT  3255

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3256  AGATTTGATTAGAAAATGACTGTGTGGGATTTTGTCAACAGTGAAGAAATGATCTAAGTATGTGGACTCCTAAG  3329

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3330  TGAATTGAGCATGATGACACTTTAGTGTAGTTAATGATCTAATGCTGGTCTGGTTGATGAGTCCCATTGAAAAT  3403

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3404  GAGATGCTCTGTTTTCTGGTAAACTTTTCTGCAAAGAAAAATGTACTAAATGTTTCAGTTCAGAGTGTTCTATT  3477

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3478  TAAATGAAATTTCATTTAATTGCTTTTAGTTTTACTGCCCATAAGCCTTCAGTTGTTTCATTTAAAGTGTACTT  3551

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3552  TAAGCCCTCCACTATATTCACTGTTGAATCTAATGAGTATGAGAGGGTACCTTGGGCACAATCTCCACGAATGT  3625

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3626  ATGAGCCATAACTACAGTATAGTATATAGAGATTAGCTTAAGTTATTTTGCTCTGCTAAAGATAGAGAAACAAG  3699

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3700  AGCAGTTTTCTAACATAATGTATGCTTCTGTAATAGGACTCAGTTAAAAAATAATTGGCAAATAGGAATGTCAA  3773

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3774  TGAAATGTGGAAATCAATTGTTTTATACATGATTTTCCCCAATACGTTAATGTTTTGACTACCAAGTAAAAGCA  3847

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3848  GTTGCACTCTAAGTCCACTAACACAGCTGAAGGTAGTAAGCTGTGGAGGAAAGTAGTCCTATATATAACACCCA  3921

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3922  TTCACTCCTCCTTTTTCCTCTTGGCTTAATTTCACCATACGATCTGTCTTGAAAATGCTTATTGCACAATTCTT  3995

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3996  CCTGATCTTTGTGCATTTGTCCTTGTTTTTGTAACTCAACCTTTGGTTTATTTATTCCATCATTCTTTCCTAAC  4069

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4070  TCAAACAAATTTGTGAAGTTCTAAATGTATTGAAATATATGTCGTAACTTTTATTTTTAATTGTGCTAGCATTT  4143

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4144  TCTTAGCTTTGTAAATGTTTTTTGCAGTGCTATGGTTGTGATGTTATGTAAGTTTTACACTTTTTTCTCCAACA  4217

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4218  TAATTTTTTCCCGAAATATTGCCAGTTATTTTTGTTATTGAATAGACTTAATTTTCTTAGAGCAGTTTCAGGAT  4291

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4292  TACAGAAAAGTCAGAGAGTACAGAAAGTTCCCATATATCTCCCATCCCTTTTCTCACAGTTTCACTTGTTATTA  4365

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4366  ACATCTTACATTAGTGTGGTACATTTGTTAACAATTGATAAAACAATTTTGTTACATTATTATTAAGTACACAG  4439

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4440  TTTACACTAGAGTTTATTCTTTTTGTTGGTCAGTTCTATGAGTTTTGAATAGTGTATAATGTCATATATTCACC  4513

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4514  ATTATATTGTCATGCAGAATAGTTTCACATTTCTGAATATCCCCTATTTATCCCTTCCTCTTCCCCTCACAAAC  4587

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4588  CCCTGGAATCCATTGATCTGAAACTGTCTTGCAGTTTTCTCTTTTCCAGAATGTATGTATAGAGTCATACAGAC  4661

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4662  TCTGTTGCCCTTTCAAACTGGCTTCTTTCATTTAACAACACGCATGTAAGCATCCTTCATGACTTTTCATGGCT  4735

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4736  TGATAGCTCATTTATTTTTTATTGTTCAATAATATTTCATTGTATGGATATGCCACAGTTTATTTATCTATATA  4809

Query  220  --------------------------------------------------------------  219
                                                                          
Sbjct 4810  TCTGTTGAAAGATATCTCGGTTACTTCCAATTTTTGGCAATTATGAATAAAGATACTATAAA  4871

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.