Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
XR_002957767.1
Aligned Length:
4866
Identities:
190
Gaps:
4648

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGTTAGCGCTTTCCTGGCCTAGAAGTGTAAATGTCTGTGTCTGTTGGTGAGACAGAGGACGTGGGCGCCCGCCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AAGAGAAGGCGCCTAGGCGCTGTCCGTAGTGCTGAAATGGTGCGTGGTGAGACCTGTCTCCCCAACACAAGCTA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GAAGACAACAAAATAGCAGCCAGGAAACGCTCTGATAAAGCTCTAGATAGCTGCCAGGCCGAGCTCAAGGGAGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGAACTAAGTTACATGATTCTGCTGCGGATGTATAAGCACCACTCCAATAATTTATTATCACGGTTGGAGACTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGACTTGTCACTTTATGACTTGAAATATGGCTCCATGGTAAATGCCCATAAAGCTGATTTTTAAAATCTGGATA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTACAGTTCTAATTCTCACTTAGTTTAAAAGGTAGAATAGGCTTCTTGTTTCATAGATCATTTGTGTGAATGTT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GATTTGTTATGTCATTGACATCATACACACATGCTTACATTTTGAAGGTTGCTAGCGTTTCCCATTAATGCTTC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGAATTGATGCCAAAGGAAAGCATTGATTATAAATTAGGTTCCTTGGTATTAGTTGGTGCATGACCCTGACCCT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTTCAAGCTATATGAAAGGTAATGATGCTCTCAAAAGCCTGCAAAATGGCTTATTCAGGAAAGCATAATGGATT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AAAAATCCATTAGGTTCCACTTTCTTTGCTAGATGCTGAGATACAAAGATAAATGAGATTTGGTCTCTGCCCTC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GAGGAGATACGTGGCAAAATAATATGGTAAGTTCTACAAAGTTCTATACAAACACAGATTAATATGCTATTCAT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GTTTTATTAGCCATTGCCAAAGAAGGGATGAAGAACTGCAAAAAGATAAAACACAGAATACTTGTACTTCAGGT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCTTGCCAATATCTACTGCCCAACTTTTACAAAAAAAATTGCTGAAAGGCATGAAATATATGAATGCCTTTCTA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AAGCACATGTGGATAATCTATACTTCTGGAGCATCTATGATTTATTTTCAGAACAATCCAAGTTATTAGAAAGG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TAAATATGTTGGTGACATTGTTTAGAAGTTCCTCAAGCAGAATTGCCTTTACTATGCTTTGACATTATGCTCTC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AGCTTATATACAGTAATTCTATGTGAAACAGTAGCCAGCTTACACAACCTGCTCTATATCTACTACAGAGCTGT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TACTAAAGTGTTGGTCAACATATAACTTACTATTTCTTATATAAAGATGCCCAAGAAATTTAGATTTCATAGAT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ATATCCCCAAAAGCATTTCTTTCAATACCAGTTTAATGAATTGAACTTTCATACCTCACTTAAATCAACCCAGG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GTAAAGTGGTATGTTCTGTTCTTACACACAATGAAAATCATGTAACTAATTAAAGTTAGCATTTATTTTAGCTA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CTAGGGATGCCAGAGTCAAATTAACAGCTGAAAATGAATAACTACATAAGACCTTAAGCCTTTTATATCTTTTC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TTTTTTTTTAATCACCTTAACTACTGCAATTTTGGTTTCTTAGGTAATGATAATATTATTTTCTTTTAATTATT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TGTTTTAATGTGTGACCTCATGTAAATGTCCTCATAAAATCAGAAGTGGAGTAAATAAATAAATAAAGTAAATT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCTCTACTTTTTGATTATTGGGTGAGTGTATATGGTTGTTTTATAAATTTATTCTAAATAGGATACTAAAATAC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AGAAAATGTATCATCTAATTAGCTATGAAGATAAAAATCTAAACTATAATGAGGAAATATTAAAATGTCAAGAT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GACGAAGAAATTTTTCAGTTTATATAATTATAGATCAGCTTAATTTCAAACCACTTTGTTACCCTATTGCTATT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TTTATACTCTAAATAGTGTCCCTTATATGACTAAGACTTTTTGTTATCTCAGAGATTGGAAGTGTTAATTGTCC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  ACCTTGTTAGAAGACATGGTAACTATAGGAATTTAGAAAGCATGATAGCCCAACTGTAATGAATATATTCTAGA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  ATGAGGTTGTCACAAAGAAACTGAAAACAAGAATTTCCTCTAACAACTGAGCTCAGGATTCTTTTCAGAGGAAA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ATTTAGCTTGCATAAATTCTTGCCATCTTGGCTCTAGTTGACTTCTTGCTCTCAACTTTTGCAAAGTGAGATCA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CCTTTACCTCTTCAACCTATGAGGCCAACATGTTACTTTCAATTTTTCAGGAAAATCTACGTCTTGTTTGGCTG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  AGGTTTGATTATTATTCCTTAACTAAAATATTTTAATGTAGCTGTGCTTTTTAATTTGAATATTGCTATTGATT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CAAACATTGGGTAGCATATCTTTCAAATGTGAAATTTTAAAACATGTATTAAAGACAAACATAAATTAGTTTTG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GTATAACTATTTTTTAAGATTAATCCAATGCTTTTTTGGCTTTAGATGATGTTTGGTAATTAGCTATATTCAAA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AGTCAACCTTTTTTTTTTTTCAAAAAATGAACTCCTATGTATATGAGTGTTATTTTTATCTACCCATGTCTTTT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TTGTCTACATATACAGTTTTAATCATTGTTTCGGGGGGAGGAATAAGAATGATTTTGAAATTTCACTAAGAAAG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ATATGCCCTCTTCCTAAAAATACATATATACAGATGTTTTGCTCACAGCTCAGGTATTCATGGATCTCTGGAAG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TTCATTTTTATAATCCCAAGGTAATCCAAAGAGCCTGCTAAAAAATTCTGCTGTAAATGCATGGTACATGATCT  2738

Query    1  ----------------------------------------------------------------------ATGG  4
                                                                                  ||||
Sbjct 2739  CATTCCCTGTTTTACAACGAAGTATTGAATGGCTTAAACTCCTACTTTTTTTTTTTTTTTTTTTTTTGAGATGG  2812

Query    5  AGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTC  78
            ||||||..|||||..|||||.||||||||.||||||..||||||.|||||||||||||||||||||..|.|.||
Sbjct 2813  AGTCTCCCTCTGTTACCCAGGCTGGAGTGCAGTGGCTCGATCTCTGCTCACTGCAACCTCTGCCTCCTGGGTTC  2886

Query   79  AAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAA------  146
            ||||||||||||||||||.||||.|.|||||.|||||||||||.|||||.||.|.||.|||.||||||      
Sbjct 2887  AAGCGATTCTCCTGCCTCAGCCTTCTGAGTAACTGGGATTACAAGCACATGCCATCAGGCCTGGCTAATTTTTA  2960

Query  147  --TTTTTTTTGTATTTTTAGTAGAGAT-GGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCA  217
              ||||||||||||||||||||.| || .||||||||.||||||||.|||||||||||||||||||||||||||
Sbjct 2961  TTTTTTTTTTGTATTTTTAGTACA-ATCAGGGTTTCAGCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCA  3033

Query  218  AG------------------------------------------------------------------------  219
            .|                                                                        
Sbjct 3034  TGATCCGCCTGCCTTGGCTTCCCAAAATGCTGGGATTACAGGCGTGAGCCAACGCGCCTGGCCAACTCCTACAT  3107

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3108  ATTTTAAAGCCACCCCATTAGTTTTCTATTTTTTTCCCCTTGGAGATCTTCCTTTAGGTCATTTTTACCATCTG  3181

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3182  ATATCTCAAAACTAAGCCAAGGCTGAATGTGCTGAAATAGGATTAGAGAGTACAGTAATAGGATAATTAGATTT  3255

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3256  GATTAGAAAATGACTGTGTGGGATTTTGTCAACAGTGAAGAAATGATCTAAGTATGTGGACTCCTAAGTGAATT  3329

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3330  GAGCATGATGACACTTTAGTGTAGTTAATGATCTAATGCTGGTCTGGTTGATGAGTCCCATTGAAAATGAGATG  3403

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3404  CTCTGTTTTCTGGTAAACTTTTCTGCAAAGAAAAATGTACTAAATGTTTCAGTTCAGAGTGTTCTATTTAAATG  3477

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3478  AAATTTCATTTAATTGCTTTTAGTTTTACTGCCCATAAGCCTTCAGTTGTTTCATTTAAAGTGTACTTTAAGCC  3551

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3552  CTCCACTATATTCACTGTTGAATCTAATGAGTATGAGAGGGTACCTTGGGCACAATCTCCACGAATGTATGAGC  3625

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3626  CATAACTACAGTATAGTATATAGAGATTAGCTTAAGTTATTTTGCTCTGCTAAAGATAGAGAAACAAGAGCAGT  3699

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3700  TTTCTAACATAATGTATGCTTCTGTAATAGGACTCAGTTAAAAAATAATTGGCAAATAGGAATGTCAATGAAAT  3773

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3774  GTGGAAATCAATTGTTTTATACATGATTTTCCCCAATACGTTAATGTTTTGACTACCAAGTAAAAGCAGTTGCA  3847

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3848  CTCTAAGTCCACTAACACAGCTGAAGGTAGTAAGCTGTGGAGGAAAGTAGTCCTATATATAACACCCATTCACT  3921

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3922  CCTCCTTTTTCCTCTTGGCTTAATTTCACCATACGATCTGTCTTGAAAATGCTTATTGCACAATTCTTCCTGAT  3995

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3996  CTTTGTGCATTTGTCCTTGTTTTTGTAACTCAACCTTTGGTTTATTTATTCCATCATTCTTTCCTAACTCAAAC  4069

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4070  AAATTTGTGAAGTTCTAAATGTATTGAAATATATGTCGTAACTTTTATTTTTAATTGTGCTAGCATTTTCTTAG  4143

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4144  CTTTGTAAATGTTTTTTGCAGTGCTATGGTTGTGATGTTATGTAAGTTTTACACTTTTTTCTCCAACATAATTT  4217

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4218  TTTCCCGAAATATTGCCAGTTATTTTTGTTATTGAATAGACTTAATTTTCTTAGAGCAGTTTCAGGATTACAGA  4291

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4292  AAAGTCAGAGAGTACAGAAAGTTCCCATATATCTCCCATCCCTTTTCTCACAGTTTCACTTGTTATTAACATCT  4365

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4366  TACATTAGTGTGGTACATTTGTTAACAATTGATAAAACAATTTTGTTACATTATTATTAAGTACACAGTTTACA  4439

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4440  CTAGAGTTTATTCTTTTTGTTGGTCAGTTCTATGAGTTTTGAATAGTGTATAATGTCATATATTCACCATTATA  4513

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4514  TTGTCATGCAGAATAGTTTCACATTTCTGAATATCCCCTATTTATCCCTTCCTCTTCCCCTCACAAACCCCTGG  4587

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4588  AATCCATTGATCTGAAACTGTCTTGCAGTTTTCTCTTTTCCAGAATGTATGTATAGAGTCATACAGACTCTGTT  4661

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4662  GCCCTTTCAAACTGGCTTCTTTCATTTAACAACACGCATGTAAGCATCCTTCATGACTTTTCATGGCTTGATAG  4735

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4736  CTCATTTATTTTTTATTGTTCAATAATATTTCATTGTATGGATATGCCACAGTTTATTTATCTATATATCTGTT  4809

Query  220  --------------------------------------------------------  219
                                                                    
Sbjct 4810  GAAAGATATCTCGGTTACTTCCAATTTTTGGCAATTATGAATAAAGATACTATAAA  4865

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