Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
XR_002959067.1
Aligned Length:
4290
Identities:
79
Gaps:
4203

Alignment

Query    1  ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATT  148
                                                                  ||.||||.|||.||||||  
Sbjct    1  ------------------------------------------------------GCCACCACGCCTGGCTAA--  18

Query  149  TTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG---  219
             ||||||||||||.|||||||||||||.||||.||||||||||||| |||||..|||||||||||||||||   
Sbjct   19  -TTTTTGTATTTTCAGTAGAGATGGGGCTTCATCATGTTGGCCAGG-TGGTCCTGAACTCCTGACCTCAAGTAA  90

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct   91  TCTGCCTGCCTTGGCCTTCCAAAATGCTTGGGATTACAGGCGTGAGCCACTGCGCCTGGTCCCTATTTTCTTTT  164

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  165  TACAACAGACCTTGGGAAATATTTTCTTCCCCCAAGAGGTTGAGGCCCATGGAATGCATTAGGGGCAGGTGGGG  238

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  239  TGGTGGTGCTCTGTAGCCTTTAGGACTTCTAGAATCAGGCTTCTGGGCCACCTTCTTAGCAGGTGTATACCTCT  312

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  313  TTGTTCCAGACTGACTTTCTGTCTCACAATATCTTCACTATTTCCACAGTTGCAGCCAAGACAGGAAACTGAAA  386

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  387  GCTGAGGCCAGAAGGGTGGTGTACTGGGGGGAGGGGAAAATTGAGTGTCACTTTGGAAAACTGGGGCCCCCATC  460

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  461  TAAGGATTGCTGCCTCTGTAGATTCAAAAGCAATAAAACAGCAGCTCATTAACTCTTATTTTGTATTTTATTTT  534

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  535  CTGTCTTTTTCATGTCTAAATAAAGATTTTTGCTTTGCTGTCCCCAAGTCCCCCTCCTTTAAAGGAGCTGCAGC  608

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  609  TCCTTCTCTCCTTGTTCCCAGCTTTCCTTACCCATCTTTGCTTCTAGGGTTGCAGATGGGAGGGACGGGGGATG  682

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  683  GACTGCTGAGCTGAAGAGAGGTTTCCAGCCCTCACCTGTGAAAGTCCTGAACATGAATCATTCATTTGGAGATC  756

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  757  TGGTGTCTGGGTTGGAGGGGTGGAGTCACATACGGGAATGGGCACTTATTGCCTATTGGTTGTGTATCTACGTG  830

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  831  ATGGGCAAGATTAACTGGTAAGATCTTTTTGTCCCACCCACATCCCCAAGACTTGCACACAAACTGTACTTGTG  904

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  905  TCTGCATCTTGGACACATTTCCATCTCTTTTTATACTTCTCCACTGCAGTCTTCACATGATGTCTGTGTCATGC  978

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  979  CCTCTAGAGAAAGATATGCAAAACCACTTTAACCAGTTTCCCTGCTTCCTCACCTAATTCTTGGGCCTCTGCTG  1052

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1053  ACAAAAATCCCCCCAGGTCTAATTTTCATTTTCTTCTGGAAGAGGCGGCAAGGAGGCTTGAACCACTTTCACAT  1126

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1127  TCCTACCCCTCTCCCCGCCCCAAACCCCTTTGAGAAGACAAAAGAACGGAGCTTTTAAGGGAAGTCATCACTGA  1200

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1201  GACACTCCAGACAGGTAGCCCAGATGATTCCAGCTTCATAATCAATAGAACTGCTCCCCTCAAACGGTCTCCAG  1274

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1275  TACTCATGAACAGGAAGAGAACAGGGTCTGGGATTGGGGTAAAGAAGGGAGTCGTTTTTCTCTCAGTCCCCATT  1348

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1349  TCTTCCCCACCCGTCCGTCTCAGACTCCACCGTTTCCTCTCCACTTTTCCAGAATTGTGTGTATTCTCCTTTAA  1422

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1423  GGGGTTGGGCATCTCTCCCGCCCTCTCCAGAGTCGACTGAAGTTTCCGAGGAGACTTCTCAGGCTGGGCTGGAC  1496

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1497  ACACCTTTCCAAGGACCCCCAAACTCTGCTCCGTGCACGTCAAATGCTCCTTTCCCTTGTGTCCAACCCCCTAC  1570

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1571  CCCTCTCCCTAACACCCCTCTTCTCAACAAGACTCAGCCTCTCCCCGAGGTGGGTGAGCATCCTTGAGGTTTCC  1644

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1645  CACCCTTAACTGCTGTGTCCCCGGATGGAGCCAGAGAAATGTGGTGGGGGGGCCGGGGCCAGAGTTTCAACATT  1718

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1719  GCCCCCCAGAAGGAGGAGCCAGAGATGGGGTCTGTCCAGGAAAATAGGATGCCGGAGCCCAGGAGTCGTCAGCC  1792

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1793  TAGCAGTTGCCTGGCCTCCAGATGCCTCCCAGGGTCACCTTCCAGCCCTGTGGATGGCAGTGGAATCAGGACAC  1866

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1867  TCCCTTGAACAGTGAATACGATTTTGCCCTGGTCAACATTGGACGATTAGAGGCTGTGAGCGGCTTGTCCCGAG  1940

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1941  TCCAGCTCCTCCGTCCAGGGTCCCTGCATAAATTTATCCCTGAGGAGATTCTGATTCATGGCCGAGACTTCCGG  2014

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2015  CTGCTCAGAGTTGGTTTTGAGGCTGGAGGCCTAGAGCCTCAGGCTTTTCAGGTGACCATGGCCATTGTCCAAGC  2088

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2089  CAGAGCTCAGAGCAATCAAGCCCAACAGTATTCGGGGATAACCCTGAGCAAGGCTGGCCAGGGTTCTGGCTCCA  2162

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2163  GAAAACCACCAATTCCTCTCATGGAGACAGCGGAAGACTGGGAGACTGAGCGGAAGAAGCAGGCAGCCAGAGGC  2236

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2237  TGGAGGGTCAGCACGGTCAACGAGAGGTTCGACGTAGCCACCAGCCTCCCCCGTTACTTCTGGGTCCCTAACCG  2310

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2311  AATTCTGGACAGTGAGGTCAGGAGAGCATTTGGCCACTTTCATCAGGGCCGTGGACCGCGCTTGTCCTGGCATC  2384

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2385  ACCCTGGGGGCAGTGATCTTCTCCGCTGTGGAGGCTTCTATACAGCCAGTGACCCTAACAAGGAGGATATCAGA  2458

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2459  GCAGTGGAGTTGATGCTCCAGGCTGGGCATTCAGATGTTGTCCTGGTAGACACTATGGATGAGCTGCCCAGCCT  2532

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2533  TGCAGATGTCCAACTTGCCCACCTGAGGCTGAGGGCCCTCTGCCTGCCTGATTCATCTGTAGCTGAGGATAAAT  2606

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2607  GGCTTTCAGCCCTGGAAGGAACACGATGGCTGGACTATGTCAGGGCTTGTCTTCGAAAGGCCAGTGACATTTCA  2680

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2681  GTATTAGTGACATCCAGGGTTCGTTCTGTAATACTTCAAGCTGCTTTCAGCCCCCGAAGCCCGAACACTGTTTG  2754

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2755  GCTTCCAATCACTAGTACAGCGAGAGTGGGTGGCAGCTGGACATCCCTTCCTGACTCGGCTTGGGGGAACTGGG  2828

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2829  GCCAGTGAAGAGGCTCCGGTGTTTCTCCTCTTCCTTGATTGTGTCTGGCAGCTCCTCCAGCAGTTTCCAGCTGA  2902

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2903  TTTTGAATTCTCTGAGTTTTTCCTTCTTGCTCTTCATGACAGTGTCAGGGTTCCTGACACCCTTACCTTCCTGA  2976

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2977  GAAATACCCCCTGGGAGCGCGGAAAGCAGAGCGGACAGTTAAACTCCTATACACAAGTCTACACCCCAGGATAC  3050

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3051  TCCCAGCCTCCAGCTGGGAACTCTTTTAACCTGCAGCTGTCTGTCTGGGACTGGGATTTACGTTATAGCAATGC  3124

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3125  ACAGATACTACAATTCCAGAATCCTGGCTATGACCCAGAACACTGTCCAGATTCCTGGCTCCCTAGACCACAGC  3198

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3199  CAAGCTTCATGGTTCCTGGACCCCCCAGTTCTGTGTGGCTCTTCTCTAGAGGAGCATTGACCCCCCTGAATCAG  3272

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3273  CTCTGTCCTTGGCGGGACAGTCCTTCCCTGCTGGCAGTCTCTTCTCGTTGGCTCCCTCGACCTGCTATCTCCTC  3346

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3347  TGAAAGCCTGGCTGACCAGGAATGGGGTCTCCCCTCACATTGGGGAGCTTGCCCTTTACCTCCAGGGCTGCTGC  3420

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3421  TGCCTGGGTATCTGGGACCCCAGATCAGGCTCTGGAGACGCTGCTACCTGAGGGGAAGGCCTGAGGTCCAGATG  3494

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3495  GGCCTCTCAGCTCCCACAATCTCTGGCCTCCAGGATGAGCTATCCCATCTTCAGGAGTTATTACGGAAATGGAC  3568

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3569  ACCAAGAATATCTCCTGAGGATCACTCCAAGAAAAGAGATCCACATACCATTCTCAATCCCACTGAAATTGCTG  3642

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3643  GCATTCTCAAAGGCAGGGCAGAGGGGGATCTGGGGTAGAGGAGGGTTCTGTCTAATCTTTTTTTTTTTTTTTTG  3716

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3717  TATCTGCACTTGCAGCCTCAGCTTTCACACTTCAGCCCTTAAGTTCACTAAGAAGGTCTGAGTTTCTGCTGCAG  3790

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3791  ATAGTGGTGTTAACTGCTCCAACTCTTGTCTTGCTTAGTTTCTACAAATATTTTTGCTTCTTGTCATTTGAAGG  3864

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3865  ATTAAGAAACAAAAACAATCCAGAAATTGATCGGTTTTTTTAGGCCAATCCCATCCCTTCTGGATAACCAGATG  3938

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3939  TTAAATCATGAGATCAGAGATGCTGTTCATCAGTCCCAACAAGATGGCCTAGAAATCGCATTCTCACCTCGCCT  4012

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4013  TGCTGCTGCTTTAATTCCAAGTTCTATTTCTTCCCTTATAGTTTTCTATGGGAATGAGGCGGATACAGGAAACA  4086

Query  220  ------------------------------------------------------------------------  219
                                                                                    
Sbjct 4087  CCCTATCTCCTCTGTATTTTTGTAGTGGAATTTCTATTTAAGGGGCTCATTAAAGCATAGTATTTATACACA  4158

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