Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12783
Subject:
XR_002959392.1
Aligned Length:
5571
Identities:
188
Gaps:
5352

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAAGAACCCACACAGATGTGGTGGAATCCAGCAGCCTTCCACATGCACACAGTGTCTGCAGATGATGCCTCTTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACCGTCTCTTAGATAATCTCATCACCCCCGAACAAAACCCATCCTTTCCACCCGGTAGTTAAGCCTCTGAAGAT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCGCAGACCCTTCAGATCCAGATCAAAATCAAGGTCGAGGTCCACCGAAGAGCCAGAGCCCCACGCCGGAGGAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGCAGGCCCCTCTCCAACCGTAAACGCTTCTGGAAGCGCGGTGGGCCAGGCCTGTCCTTCGGGACGTGACTGAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTGCAGCGGCCGTGCTCAACTTCTCTCGGGAGCCCCGGGCGCCGACCCATTTCCAAGGGGGAATCCCCGGTACG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCGGGGGCGGTGGCGGGGCGCGCGCCCCGGACACACTCACCCACGCGCACACCTGGCTGGCGGTTGCACGGCAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGAGGGGGCTGTCGGGCGTCCCTACCCGCCATCCTCCCCAAACTCCCTCCCCAGCCCAGAGCCCCGCAGCCCGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAGCCTCTCCAGCCCCTAACACCGGCCGCGCGCAGCCAGCGGCTGCTAACAGGTACCGGGCGCCTTCCCACGCG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCGGGCGCCGGCCGGGCCTGCGGCTGCTCAGCACCCCAGCACTGCTGGAGCAGGCGGCGGCGGAGTGCGGGACG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GCGGGGAGGGGCGCCTCGCGCGCGCCCTGCCACACTCACCACCACGGCATCGCTGTCGGCCACTGATCCCGCCA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TCTTCTTGCCCGGCGCGGCGGGGAGAAGGTATGACATAGCTCCACCTACATGCAAGGGGAGCCAGGAAGTGCAA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TCCCTGGCTGGGCTGCCACGTCTCAGAAACCATTAAGCCTATGGAAGGTCTCTGGATTTGATGGCAAATGGCAG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CAGAAATGTGGAAAAGATCAAAGTGATGTCAAGGTTGATCTCTGAGTTTGGCATGGCTGAACTCAAACATCATT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TGCCATGGACCCACAGTGTCTTCAGTAGCTGAGTGTGGTGTCATTCCCCTATGATATGTGCACTCAATTGCTGG  1036

Query    1  -----------------------ATGGAGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGC  51
                                   |..|||||||..|.||||.||.||.||||||||.|||||||.|||||||||
Sbjct 1037  CCAGTTTTTGTTTTTTGTTTTTGAGAGAGTCTCGCTTTGTCTCCTAGGCTGGAGTGCAGTGGCACGATCTCGGC  1110

Query   52  TCACTGCAACCTCTGCCTCTCGAGGTCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCA  125
            |||||||||||||.|||||.||.|.|||||.||||.|||||||||.||||||.|||||||||.|||||||||||
Sbjct 1111  TCACTGCAACCTCCGCCTCCCGGGTTCAAGTGATTTTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGGCA  1184

Query  126  CACGCAACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGT  199
            ...||.|.||.|||||||||||||||||||||.||||||||||||.|||||||..|||||||||||||||||||
Sbjct 1185  TGTGCCAGCAGGCCCGGCTAATTTTTTTTGTAATTTTAGTAGAGACGGGGTTTTGCCATGTTGGCCAGGCTGGT  1258

Query  200  CTCGAACTCCTGACCTCAAG------------------------------------------------------  219
            |||||.||||||.|||||||                                                      
Sbjct 1259  CTCGAGCTCCTGGCCTCAAGTGATCCACCTGCCTCCACCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTG  1332

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1333  TACCTGGCCCCAAAGTTTTAGAAATTGGATCATTTTAAATGTTGGAGGGGAGTTCATTGTTTAGGATGGCTGTG  1406

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1407  TGGCAAATCTTTTTTTAAAGTAAGTAATTCTCCTCTATTATAAGTCACCTCCTGATCTCTACATTTAAGGTTTG  1480

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1481  CTGTCCTGGATGTGTTCACCTATGAATGTAAGTGTGCTGAGATACACAGTGCAAGGCTGAAGTCAGAGTACACC  1554

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1555  ACTGATGAACCCCTGGGAACTGGTAACCCAGCCAGGGAATGAACATCTTTTATGAATCAGTTTATCCACCAAAC  1628

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1629  ACTTGCAGAGAGCCTATCCCATGCCACCCCTGAGGGCACGGTGATGGAGAAGATATGCTTCCTGCCTCCAAGAA  1702

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1703  CCCCATAGTCTAGTGGCAGAGACAAGCAGGTACATAGCTGCCTATAGTACAGCATCACAGGTGCCATAACATTG  1776

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1777  TGTAAACTGGGAATAATTCTATTCTCTGGATATAGAACATCTAACCAAGATATTGAGTATCTGGCTTCCCCTTC  1850

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1851  CCCACACTGGCCCTCACTGGGATCCATGTCTAATATTATGAAAGTCACACAATATCATTATAAACTAATCATAA  1924

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1925  ATGGCACTGTCAGTTTGCTACAAAAACTTATTCAGAAAATATTCAGATTCTCCCATCAACATATGCCGCTATGT  1998

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1999  TGGCAAAAGCTCTGATTTAAAATACTTATTTCGTTTTCCTCTCCGATTTTGTTCTAGTCTTCAAAATGATTTCA  2072

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2073  TACAACATAGCACTGAGTTCCTTAGTTCCTCTGACCCCTGCCAGATCTGAAGCTGTGATGTTCAAAAGTCAGGG  2146

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2147  CAGAGTCCATCTTATGATTGAGTTTCATAAGAGTCTAAGCCACTGATCAACATACTGTGGCAGAGTAAGCTTTC  2220

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2221  TGGGTTCCAGAATTTATTGTGAGTGGGCTGAGGGAGTTGAGAAATGGCATGGGAGGCCTAAAGAGAAAATAACT  2294

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2295  TTTGAATGAAAATTATAGGAAAGTGGATTTGAGATCAAAACAAAGGAAGGTTGATCATAGTTGGAATCATTTAA  2368

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2369  GATTGGTGGGGGTAGTGGGCTTCTGGTTCTTAACCCAGGCCAGGCAGAGGTGTGACAACAGTCAGGGGTTTCTA  2442

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2443  AACAGGGTGGGAGGTTAGATGAGAATAGCCTTCAACCCTTTGTGTTGAACTAAAATCCTAGCTCTGCTTTCAAC  2516

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2517  TCCTAGACTCTGCTTCATCATTGCTAAGTTGGAAAGAGCAAGCAATTGAGAGTCCCTGCTGGCCACAGCTGGGG  2590

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2591  TGCCCCAGACCACAGCACTGAGCCTCAAAGGCAAGTGAGCATAGTGTTGGGAGCTGGGCTTCTGGATCCATCAA  2664

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2665  CTCCATCTGATGACTCGGAAGTTCCTTCAGTTCCCAACACTGGAGTCCAGCAAGGCTGGTTTGTCTTGTTTTAA  2738

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2739  TTATTATTTAGATGACTGTTTGGCTCATACCTGAGCAAGGTTCAAATCAAGTCAGACCTGTTAATTTAATCAAA  2812

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2813  GTTATATAATCACATTTGGGCACTTAAATGTAAACCAATTATGTTGGAAGCCAAGTATCTTGTACTCAGGAGGG  2886

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2887  AGTTCTAATAAGTGCTGGGAATGTATGCTAATGCACAAAGCCTAACCCCCAGAGTGGAGGGTGGAGCACTCCAG  2960

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2961  GGCACTCCTGTTTCGGTGACGTTGTTTTAATAGCTAGTGCTCTGGGTGCAGTCTGGGAAGATATTGGAAACATC  3034

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3035  TCAAGCAAGTATGACATCCATTTTACCCAAGCCCATGGAACCCATTATGTTTGGAACATGTCTGTCTGTGGCAT  3108

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3109  TTGGCTTGGCTTATAAATGCACTATCAGAATCTATAGGAGGCCTTCGCAACAAGACGTGTCTTGGCCTTTCTGG  3182

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3183  TTATCAGCAATCCCTCCACCTCTCTCTTAACAAACATATGCCATAAGTCCTGATCAGGCATTTAGTTTTTTCAC  3256

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3257  TTGGACCTTTTCCTAGTTCCTAGTCTCAACCCCAATGCCTCCTAATCTTGTACTTCTTCAAATACTGGCCCCCC  3330

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3331  TCTACTATGAGAGAGAGAGGAAAGTAGGGAGGAGAAGGAGGAAAAGTTATTGAGTTGATATGAGGGTAGTCAAC  3404

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3405  CTAAAGCAACAATCAGGAGTAAGGTACTGGACTTGAGTTTGAAGTGTTTGTCACTAAACTCTCTCAAACTCTTC  3478

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3479  CAGGCTAACTAGCCTCAGAGGGCTTCTAGCCCATAGTCTCCTTGTATTTTCTGCCCTCCTCACTTGGAGTGGGA  3552

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3553  GGGAACCAGATGTCCAGTCTTTGTCCCGTGTTAAGAACTGGCCTGGCAGGCTTTGTTGAGACCATCCAGACTTG  3626

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3627  AAAGCCTCACAACCAGATGCCATCACAGGCACTTTCTGCTCTTAACCTTTGTCTGTGTCTCCTACATGAACTCA  3700

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3701  TCAGACTGCCTCTGAAGAGGGACATTCTAGGGACAGTTTCATCTTCATCACCATCCTGGATAGGGAACCCTTCC  3774

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3775  AGACTCAGAGTTGCAAAAGTCAGGGAGGGGCTGCTCACTGGAGGTGGAGTCCTTTGGCCAGGTTTCACTGTAAA  3848

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3849  CACATGGCTAAAATGTGTCGCACATGGACAGGCATGCTAGTGTGCTCTGGATACATGCTAGTGTGCCCCAGATA  3922

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3923  TATGCTAGTGTGCCCCGTATAGCTTCTGGCTAAAGGACACACCTCAGCAAGGCCAAATGAGGCATCAGGATGAA  3996

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3997  CTCTTCAAATAGACTTCATTAGACCCACAGAAGACTAACCTTTGCCTGACTTTGGATTACCCCTTTCTTGCCAG  4070

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4071  GAATTATGTTCAATGACTATATCTGGAACTAGAGGTCTTGATAGCCACACTTTGCTTGGTGTGGCTTCTCAGTC  4144

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4145  TTTTAAGGACATGGCTATCAAGGGCTCATGTTTATTCCAGGTCAGCCCTTTACCCCTTTCCTCCAGGGGCATCT  4218

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4219  ATGGCAACAAAAGACCATGACATCTGGCAGGGCTGGCAGGACTATTTAGTTTAGGCAGGAATGTGGGTGTTAGC  4292

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4293  ATGTCAGAGTACATCTGAGAAAACATTCCAAACCAACCTTTCCACACTGGGAACTCAACCCCCAGGAATCACCA  4366

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4367  AAGATAAGGGCAACAGTCTTATCTCTCGAGGGAAGTTCAGGGTAAAGTCCACTCCTGCTGTGGACCAGAGCTCA  4440

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4441  GGGAAGAAGAAAGCTCAGGCTGGCTCTGCCTGTCCACTTGATGAACTTCCACAAATGCCACTCTGGGAGCTGAG  4514

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4515  GCATATGAAGTGGGGAAGAAAATACCAGCCCTGCCCTGGAGCTCTGGGATGGTGGCTGTACACCCCTAAAGATG  4588

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4589  CCAGCAGATCTGAACTGTGGCCTATGTGTGTTTGGGAATTGAGAAATAAGGAGATAGAGGGACAGCAGGCAGGA  4662

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4663  AAAACTACAATTAGTCTCAGCTCACACAGATTTGGGAGTATGCAGATCTGAATTGTGGCCTCCATGTGTTTGGC  4736

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4737  TGAAGGATAATGATCTCAGGCCCAGACTTTTTTTTTTTTTTGTATCACTCGCTCAGGGGGCTCTGACCAGGAGC  4810

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4811  TTCTTTCAGATGACACAGATCCCGAGGAGCCACTTGCCTTCTACCCATGACACTTCTAAGAGTGACTCTTGCCA  4884

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4885  TGTGACCATAGAGATAAGTGAAGTTTTCTCCAATGACATCATTAAGAAGTCTAAACTTCCCCAAAGGGAGAGGC  4958

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4959  TGTGACTAGGAACACAAATGTCTCAGTGTATCACACTCATGCTCCCAGATCTGTGGGCAGAAAAAGAAATCATA  5032

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5033  GAATGGTGCATATCCTAAAAATAAAAAGGAAATTGCTTTTCAAGTTATGAAATTTGGCCCTTCTCATTGTGAGT  5106

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5107  TTAAAGTACATGTTACTGCTTCAGTTTCTAAAACAGGAGGTGGCCAAATTCAGAGTTTAAAATGTCTAAGTGGT  5180

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5181  TATTTGAAAACAGATATTTAGAGGCAACTGAGAGAAGAATACTGGGGCCATGGGTCTGCAGTCACTTTCCCAGC  5254

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5255  AGTGCTCTGAGGCCTTGGGTCTCATAAAAGGTAATCATAGTTACGCCTTTTAAAGAAAGCTGAGTCTAACTGTA  5328

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5329  GCTTTTCCTGCCTGTTGTCCCTCTATCTCCTTACTTCCCAATTCTATCTATCTTTCAAAACCCAGCTCAAATCC  5402

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5403  CACCTCCTTCCATAAGTCTTCCATTGTTTAATATAGTTGGAATTTACCTCTCCCTCCTCTAACTCCCATGGCAT  5476

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 5477  TTTATTTACACCTCTCTGATGGCCACTTTCTACTTTCTATAAGGTAAGTTATATACTTGTTTTATATCAATAAA  5550

Query  220  ---------------------  219
                                 
Sbjct 5551  TTTCAAAATATTGAAATCTTA  5571

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.